Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007105

Physical Location & Seq

Genomic Coordinates Forward (+)

47742361 .. 47743204

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG344500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGATTACATGGAAGAGCAAATTCTAACCATCAGCGAAACCAAATCTCATCATGACAGCTGTGACATCTTTTCGGTTAGTAGGAAAGGAAAAGAGGGGGTTGGGGTGCGGTTGGAGGAGTCTCCAGCGGACCGTAGCTCTGCTGGTGAGAGCAAGAAGAGGCCGGGTTCAGAGGATCAGAGGGGTTCCTACAAGCAAAGAAAGAGTCCAGAGTCATGGACAGTGGTTTCAACCACATTTGATGATGGTCAGTCTTGGAGGAAATATGGGCAGAAGGATATCCTCGGTGCTTCATATCCAAGGTGTTACTACAGATGTACCCACAGGAACACTCAAAATTGCTGGGCAACCAAACAAGTCCAACGAGTCGATGACAAGCCAAATGAGTTCGCAATTACATACAGAGGAAACCACACGTGCATAAACATGATCAGGGGTCCACAGATGATTATGGGAGCCTCCGATCCTCCTACTTGGCCGGCCCCAATTTGCAGTAAGAAAGAACATCATGGCGATCATGGTGATCATCTCTCTAGCTCACCGTCCATGATTCCTTTTGTTCCGGAGAAGAGTGCAAGGAGGGGACGACGGCGAGTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

200

Amino Acids

22.75

Weight (kDa)

9.14

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	81 - 140	1.1e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40750 AT3G56400
fragaria_vesca	FvH4_7g26030
malus_domestica	MD01G1168600.v1.1 MD07G1234700.v1.1
prunus_persica	Prupe.2G265000_v2.0.a1
pyrus_communis	pycom01g18160 pycom07g21230
rosa_chinensis	RchiOBHm_Chr1g0372441 RchiOBHm_Chr1g0372521
rosa_laevigata	RLG00000026893 RLG00000026898
rosa_multiflora	Rmu_co8027390.1_g000001 Rmu_co8028224.1_g000001 Rmu_sc0001755.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284920
rosa_rugosa	Rorug01G0371900
rosa_samantha	Rh1AG380400 Rh1AG381100 Rh1BG344000 Rh1BG344500 Rh1CG357400 Rh1DG375200 Rh1DG375700
rosa_wichuraiana	Rw1G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	2 cut(s)	109, 128
AclWI	GGATC	2 cut(s)	183, 458
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	21
AcvI	CACGTG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	319
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	231
AluBI	AGCT	3 cut(s)	60, 138, 537
AluI	AGCT	3 cut(s)	60, 138, 537
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	183, 458
Aor13HI	TCCGGA	1 cut(s)	562
AoxI	GGCC	3 cut(s)	161, 476, 480
ApoI	RAATTY	1 cut(s)	21
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AspS9I	GGNCC	3 cut(s)	130, 437, 481
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	158, 531, 533
AvaII	GGWCC	2 cut(s)	130, 437
BaeI	ACNNNNGTAYC	2 cut(s)	301, 334
BbrPI	CACGTG	1 cut(s)	417
BccI	CCATC	2 cut(s)	38, 239
BclI	TGATCA	2 cut(s)	429, 523
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	2 cut(s)	130, 437
BmgT120I	GGNCC	3 cut(s)	130, 437, 481
BmiI	GGNNCC	4 cut(s)	187, 438, 457, 483
BmrFI	CCNGG	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	283, 299
BsaWI	WCCGGW	1 cut(s)	562
Bse118I	RCCGGY	1 cut(s)	478
BseAI	TCCGGA	1 cut(s)	562
BseDI	CCNNGG	2 cut(s)	283, 299
BseRI	GAGGAG	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	342
BshFI	GGCC	3 cut(s)	163, 478, 482
BsiSI	CCGG	3 cut(s)	164, 479, 563
BslFI	GGGAC	1 cut(s)	597
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	597
BsnI	GGCC	3 cut(s)	163, 478, 482
Bsp13I	TCCGGA	1 cut(s)	562
Bsp143I	GATC	5 cut(s)	175, 429, 463, 514, 523
BspACI	CCGC	2 cut(s)	109, 128
BspANI	GGCC	3 cut(s)	163, 478, 482
BspEI	TCCGGA	1 cut(s)	562
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	4 cut(s)	187, 438, 457, 483
BspPI	GGATC	2 cut(s)	183, 458
BspQI	GCTCTTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	2 cut(s)	283, 299
BssMI	GATC	5 cut(s)	175, 429, 463, 514, 523
BssT1I	CCWWGG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	134, 223, 543
Bst6I	CTCTTC	3 cut(s)	9, 152, 563
BstBAI	YACGTR	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	480
BstKTI	GATC	5 cut(s)	178, 432, 466, 517, 526
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	5 cut(s)	175, 429, 463, 514, 523
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	163, 478, 482
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	480
CciI	TCATGA	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	478
Cfr13I	GGNCC	3 cut(s)	130, 437, 481
CpoI	CGGWCCG	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	318
CspI	CGGWCCG	1 cut(s)	130
CviAII	CATG	7 cut(s)	10, 53, 216, 427, 509, 518, 547
CviJI	RGCY	8 cut(s)	60, 138, 163, 379, 458, 478, 482, 537
CviKI_1	RGCY	8 cut(s)	60, 138, 163, 379, 458, 478, 482, 537
CviQI	GTAC	1 cut(s)	318
DpnI	GATC	5 cut(s)	177, 431, 465, 516, 525
DpnII	GATC	5 cut(s)	175, 429, 463, 514, 523
EaeI	YGGCCR	1 cut(s)	476
Eam1104I	CTCTTC	3 cut(s)	9, 152, 563
EarI	CTCTTC	3 cut(s)	9, 152, 563
Eco130I	CCWWGG	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	130, 437
Eco72I	CACGTG	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	7 cut(s)	13, 56, 219, 430, 512, 521, 550
FaqI	GGGAC	1 cut(s)	597
FatI	CATG	7 cut(s)	9, 52, 215, 426, 508, 517, 546
FbaI	TGATCA	2 cut(s)	429, 523
FseI	GGCCGGCC	1 cut(s)	482
FspBI	CTAG	1 cut(s)	534
GsaI	CCCAGC	1 cut(s)	346
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	163, 478, 482
HapII	CCGG	3 cut(s)	164, 479, 563
Hin1II	CATG	7 cut(s)	13, 56, 219, 430, 512, 521, 550
HinfI	GANTC	5 cut(s)	119, 205, 212, 366, 550
HpaII	CCGG	3 cut(s)	164, 479, 563
HphI	GGTGA	3 cut(s)	158, 531, 533
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	4 cut(s)	172, 180, 463, 602
Hpy188III	TCNNGA	3 cut(s)	53, 209, 563
Hpy8I	GTNNAC	1 cut(s)	440
Hpy99I	CGWCG	1 cut(s)	591
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	3 cut(s)	134, 223, 543
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	3 cut(s)	420, 492, 575
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	7 cut(s)	13, 56, 219, 430, 512, 521, 550
Kpn2I	TCCGGA	1 cut(s)	562
KroI	GCCGGC	1 cut(s)	478
KroNI	GCCGGC	1 cut(s)	480
Ksp22I	TGATCA	2 cut(s)	429, 523
Kzo9I	GATC	5 cut(s)	175, 429, 463, 514, 523
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	455
LpnPI	CCDG	9 cut(s)	129, 138, 177, 222, 310, 328, 418, 492, 576
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	2 cut(s)	62, 305
MalI	GATC	5 cut(s)	177, 431, 465, 516, 525
MboI	GATC	5 cut(s)	175, 429, 463, 514, 523
MboII	GAAGA	3 cut(s)	26, 169, 580
MluCI	AATT	4 cut(s)	21, 337, 393, 486
MlyI	GAGTC	4 cut(s)	128, 214, 221, 375
MmeI	TCCRAC	2 cut(s)	93, 385
MroI	TCCGGA	1 cut(s)	562
MroNI	GCCGGC	1 cut(s)	478
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	2 cut(s)	60, 128
MspI	CCGG	3 cut(s)	164, 479, 563
MspR9I	CCNGG	1 cut(s)	165
NaeI	GCCGGC	1 cut(s)	480
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	5 cut(s)	175, 429, 463, 514, 523
NgoMIV	GCCGGC	1 cut(s)	478
NlaIII	CATG	7 cut(s)	13, 56, 219, 430, 512, 521, 550
NlaIV	GGNNCC	4 cut(s)	187, 438, 457, 483
NmuCI	GTSAC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	9
PdiI	GCCGGC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	550
PleI	GAGTC	4 cut(s)	127, 213, 220, 374
PmaCI	CACGTG	1 cut(s)	417
PmlI	CACGTG	1 cut(s)	417
PpsI	GAGTC	4 cut(s)	127, 213, 220, 374
Ppu21I	YACGTR	1 cut(s)	417
PspCI	CACGTG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	342
PspN4I	GGNNCC	4 cut(s)	187, 438, 457, 483
PspPI	GGNCC	3 cut(s)	130, 437, 481
PvuII	CAGCTG	1 cut(s)	60
RigI	GGCCGGCC	1 cut(s)	482
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	425
Rsr2I	CGGWCCG	1 cut(s)	130
RsrII	CGGWCCG	1 cut(s)	130
SapI	GCTCTTC	1 cut(s)	9
Sau3AI	GATC	5 cut(s)	175, 429, 463, 514, 523
Sau96I	GGNCC	3 cut(s)	130, 437, 481
SchI	GAGTC	4 cut(s)	128, 214, 221, 375
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	5 cut(s)	62, 140, 305, 419, 539
SfcI	CTRYAG	1 cut(s)	310
SinI	GGWCC	2 cut(s)	130, 437
SmiMI	CAYNNNNRTG	1 cut(s)	425
Sse9I	AATT	4 cut(s)	21, 337, 393, 486
SsiI	CCGC	2 cut(s)	109, 128
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	3 cut(s)	134, 223, 543
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	1 cut(s)	369
TasI	AATT	4 cut(s)	21, 337, 393, 486
TfiI	GAWTC	1 cut(s)	550
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	130, 437
XapI	RAATTY	1 cut(s)	21
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.