Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007105

Physical Location & Seq

Genomic Coordinates Reverse (-)

23038658 .. 23040926

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGAACCAACCACAAGAGACTGATCGAGGAGCTACTTGAAGGCCGGAAGACGGCGGTGGAGCTTCAGAGTCTGCTCCACAAGCCGTTCGGAGATAGTGGATCGGCGGAGGAGCTTTTGATGAAGATCATGACAACATTCACAGAGAGTCTCTCTGTTCTGACTGCTTCTGACGGCCATGAGGATCACCAGTCTGCTGCTTCCGGTGAGGTTTATCAGGTCAAGCCTGAACCTTCCCATGTGGAGCACTCGCATTGTGGTGACCGGAGCTCTGAAGGTTCCGGTGAGAGTCCAAAGACTCAGGCTTTCATCGATCGGAGAGGTTGCTACAAGAGGAGAAAGACATCTCAATCATGGACGGTAATCTCTACCAAAATTGAAGATGGTCAGGCTTGGAGAAAATATGGCCAAAAGATAATCCTCAAAGCTTCATATCCAAGGGCTTACTTCAGATGCACAAGAAAGTATGATCAAGGTTGCATGGCGACCAAACAGGTCCAACAAATCCAAGACAACCCACGCACTTACCAAACCACCTACATTGGCGAGCACACGTGCAGAACCATGATCAAGGCTTCTCCAACGATCATCGGCCCTGATCCTAGGCGATCTCAGACTGTTAGCTCAGAATCTGGGTCCCCACATCGCCAAAACCCTAATTTCTTTGGCTCATCCTCGTCGTCCATTCCCATCGTCAAACAAGAAGATTCCAAAGTGGGGACACCGGACAACAATGTGTGGCTTGGTTTGAAGGATCACTTTGGTTTATCCGAGCCTGCCGGAATCTGCGTGTCTTCCAATGAGAATGTGGTTTCAAACATGCAGTGGGACGACATGGATTTGGTGAAGTCGATTAATTTTGAGTGTGATATTAATTTTGATGAAGCTGAGTTTCCTATAACTCCTTGTAATGATAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

308

Amino Acids

34.42

Weight (kDa)

6.22

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	127 - 186	1.5e-22	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40750 AT3G56400
fragaria_vesca	FvH4_7g26030
malus_domestica	MD01G1168600.v1.1 MD07G1234700.v1.1
prunus_persica	Prupe.2G265000_v2.0.a1
pyrus_communis	pycom01g18160 pycom07g21230
rosa_chinensis	RchiOBHm_Chr1g0372441 RchiOBHm_Chr1g0372521
rosa_laevigata	RLG00000026893 RLG00000026898
rosa_multiflora	Rmu_co8027390.1_g000001 Rmu_co8028224.1_g000001 Rmu_sc0001755.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284920
rosa_rugosa	Rorug01G0371900
rosa_samantha	Rh1AG380400 Rh1AG381100 Rh1BG344000 Rh1BG344500 Rh1CG357400 Rh1DG375200 Rh1DG375700
rosa_wichuraiana	Rw1G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	56, 107
AclWI	GGATC	4 cut(s)	109, 192, 593, 762
AcoI	YGGCCR	2 cut(s)	175, 406
AcuI	CTGAAG	3 cut(s)	50, 294, 433
AcvI	CACGTG	1 cut(s)	555
AfiI	CCNNNNNNNGG	2 cut(s)	52, 717
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	4 cut(s)	41, 380, 751, 816
AluBI	AGCT	7 cut(s)	34, 64, 115, 270, 428, 624, 887
AluI	AGCT	7 cut(s)	34, 64, 115, 270, 428, 624, 887
Alw21I	GWGCWC	3 cut(s)	249, 272, 552
Alw26I	GTCTC	2 cut(s)	13, 155
AlwI	GGATC	4 cut(s)	109, 192, 593, 762
AlwNI	CAGNNNCTG	2 cut(s)	73, 632
AoxI	GGCC	4 cut(s)	43, 175, 406, 592
ApeKI	GCWGC	1 cut(s)	197
AseI	ATTAAT	2 cut(s)	855, 873
AspA2I	CCTAGG	1 cut(s)	602
AspS9I	GGNCC	3 cut(s)	496, 593, 636
AsuHPI	GGTGA	5 cut(s)	179, 218, 272, 296, 856
AvaII	GGWCC	2 cut(s)	496, 636
AvrII	CCTAGG	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	272
BbrPI	CACGTG	1 cut(s)	555
BbsI	GAAGAC	2 cut(s)	56, 786
Bbv12I	GWGCWC	3 cut(s)	249, 272, 552
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	2 cut(s)	377, 698
BceAI	ACGGC	3 cut(s)	69, 70, 190
BclI	TGATCA	2 cut(s)	469, 567
BcoDI	GTCTC	2 cut(s)	13, 155
BfaI	CTAG	1 cut(s)	603
BisI	GCNGC	1 cut(s)	198
BlnI	CCTAGG	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	2 cut(s)	496, 636
BmgT120I	GGNCC	3 cut(s)	496, 593, 636
BmiI	GGNNCC	4 cut(s)	7, 280, 637, 638
BmsI	GCATC	1 cut(s)	443
BpiI	GAAGAC	2 cut(s)	56, 786
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bsa29I	ATCGAT	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	437, 602
BsaWI	WCCGGW	4 cut(s)	203, 264, 281, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 717
Bse1I	ACTGG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	125
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	437, 602
BseGI	GGATG	1 cut(s)	671
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	2 cut(s)	52, 717
BseMII	CTCAG	4 cut(s)	314, 626, 639, 879
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	3 cut(s)	44, 125, 349
BseXI	GCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	577
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	4 cut(s)	45, 177, 408, 594
BshVI	ATCGAT	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	3 cut(s)	249, 272, 552
BsiSI	CCGG	6 cut(s)	46, 204, 265, 282, 725, 780
BslFI	GGGAC	3 cut(s)	622, 733, 842
BslI	CCNNNNNNNGG	2 cut(s)	52, 717
BsmAI	GTCTC	2 cut(s)	13, 155
BsmFI	GGGAC	3 cut(s)	622, 733, 842
BsnI	GGCC	4 cut(s)	45, 177, 408, 594
Bsp1286I	GDGCHC	3 cut(s)	249, 272, 552
BspACI	CCGC	2 cut(s)	56, 107
BspANI	GGCC	4 cut(s)	45, 177, 408, 594
BspCNI	CTCAG	4 cut(s)	313, 625, 638, 880
BspDI	ATCGAT	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	4 cut(s)	7, 280, 637, 638
BspPI	GGATC	4 cut(s)	109, 192, 593, 762
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	437, 602
BssT1I	CCWWGG	2 cut(s)	437, 602
Bst4CI	ACNGT	2 cut(s)	361, 619
BstBAI	YACGTR	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	548, 777
BstDEI	CTNAG	4 cut(s)	300, 612, 625, 888
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	671
BstMAI	GTCTC	2 cut(s)	13, 155
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	823
BstPI	GGTNACC	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	2 cut(s)	56, 786
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	4 cut(s)	45, 177, 408, 594
BsuTUI	ATCGAT	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	629
BtsCI	GGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	1 cut(s)	830
Cac8I	GCNNGC	2 cut(s)	548, 777
CaiI	CAGNNNCTG	2 cut(s)	73, 632
CciI	TCATGA	1 cut(s)	129
Cfr13I	GGNCC	3 cut(s)	496, 593, 636
ClaI	ATCGAT	1 cut(s)	312
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	8 cut(s)	130, 179, 239, 354, 481, 565, 820, 835
DdeI	CTNAG	4 cut(s)	300, 612, 625, 888
EaeI	YGGCCR	2 cut(s)	175, 406
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	437, 602
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	496, 636
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	3 cut(s)	50, 294, 433
Eco72I	CACGTG	1 cut(s)	555
Eco91I	GGTNACC	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	636
EcoO65I	GGTNACC	1 cut(s)	260
EcoT14I	CCWWGG	2 cut(s)	437, 602
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	2 cut(s)	437, 602
FaeI	CATG	8 cut(s)	133, 182, 242, 357, 484, 568, 823, 838
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FaqI	GGGAC	3 cut(s)	622, 733, 842
FatI	CATG	8 cut(s)	129, 178, 238, 353, 480, 564, 819, 834
FbaI	TGATCA	2 cut(s)	469, 567
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	658
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	603
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	45, 177, 408, 594
HapII	CCGG	6 cut(s)	46, 204, 265, 282, 725, 780
Hin1II	CATG	8 cut(s)	133, 182, 242, 357, 484, 568, 823, 838
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	7 cut(s)	70, 148, 289, 298, 629, 707, 783
HpaII	CCGG	6 cut(s)	46, 204, 265, 282, 725, 780
HphI	GGTGA	5 cut(s)	179, 218, 272, 296, 856
Hpy188III	TCNNGA	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	682
HpyAV	CCTTC	4 cut(s)	35, 243, 269, 745
HpyCH4III	ACNGT	2 cut(s)	361, 619
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	4 cut(s)	456, 480, 558, 823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	4 cut(s)	300, 612, 625, 888
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	8 cut(s)	133, 182, 242, 357, 484, 568, 823, 838
KflI	GGGWCCC	1 cut(s)	636
Ksp22I	TGATCA	2 cut(s)	469, 567
LmnI	GCTCC	6 cut(s)	31, 61, 81, 112, 244, 267
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	260
MboII	GAAGA	5 cut(s)	61, 136, 392, 716, 786
MhlI	GDGCHC	3 cut(s)	249, 272, 552
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	4 cut(s)	375, 658, 856, 874
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	4 cut(s)	79, 157, 292, 298
MmeI	TCCRAC	2 cut(s)	523, 605
MnlI	CCTC	8 cut(s)	22, 103, 175, 202, 314, 327, 431, 685
Mox20I	TGGCCA	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	2 cut(s)	855, 873
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	408
MspI	CCGG	6 cut(s)	46, 204, 265, 282, 725, 780
MwoI	GCNNNNNNNGC	1 cut(s)	82
NlaIII	CATG	8 cut(s)	133, 182, 242, 357, 484, 568, 823, 838
NlaIV	GGNNCC	4 cut(s)	7, 280, 637, 638
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	823
PagI	TCATGA	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	629, 707, 783
PkrI	GCNGC	1 cut(s)	199
Ple19I	CGATCG	1 cut(s)	316
PleI	GAGTC	4 cut(s)	78, 156, 292, 297
PmaCI	CACGTG	1 cut(s)	555
PmlI	CACGTG	1 cut(s)	555
PpsI	GAGTC	4 cut(s)	78, 156, 292, 297
Ppu21I	YACGTR	1 cut(s)	555
PpuMI	RGGWCCY	1 cut(s)	636
PshBI	ATTAAT	2 cut(s)	855, 873
Psp124BI	GAGCTC	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	636
PspCI	CACGTG	1 cut(s)	555
PspEI	GGTNACC	1 cut(s)	260
PspN4I	GGNNCC	4 cut(s)	7, 280, 637, 638
PspPI	GGNCC	3 cut(s)	496, 593, 636
PspPPI	RGGWCCY	1 cut(s)	636
PstNI	CAGNNNCTG	2 cut(s)	73, 632
PvuI	CGATCG	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	855, 873
SatI	GCNGC	1 cut(s)	198
Sau96I	GGNCC	3 cut(s)	496, 593, 636
SchI	GAGTC	4 cut(s)	79, 157, 292, 298
SduI	GDGCHC	3 cut(s)	249, 272, 552
SfaNI	GCATC	1 cut(s)	443
SinI	GGWCC	2 cut(s)	496, 636
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	4 cut(s)	375, 658, 856, 874
SsiI	CCGC	2 cut(s)	56, 107
SspMI	CTAG	1 cut(s)	603
SstI	GAGCTC	1 cut(s)	272
StyI	CCWWGG	2 cut(s)	437, 602
TaaI	ACNGT	2 cut(s)	361, 619
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	3 cut(s)	27, 312, 851
TasI	AATT	4 cut(s)	375, 658, 856, 874
TfiI	GAWTC	3 cut(s)	629, 707, 783
Tru1I	TTAA	2 cut(s)	855, 873
Tru9I	TTAA	2 cut(s)	855, 873
TscAI	CASTG	1 cut(s)	830
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	4 cut(s)	137, 298, 420, 897
TspRI	CASTG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	496, 636
VspI	ATTAAT	2 cut(s)	855, 873
XceI	RCATGY	1 cut(s)	823
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmaJI	CCTAGG	1 cut(s)	602
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.