Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007105

Physical Location & Seq

Genomic Coordinates Reverse (-)

20908711 .. 20910623

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGATACTAATAAAGCAAAAAAGCTTAAAGTTATGAACCAACTCGTTGAAGGCCATGACTTAACAACTCAGCTTCAGCAACTCCTCTCTCAACCCGGGTCCGGTCTAGAGGATCTAGTGGCTAAAATCTTAGTGTGTTTCAATAACACCATCTCCGTTCTTGATACCTTCGAACCCATCTCCTCCTCCTCATCCCTCGCCGCCGTTGAGGGATCTCAAAATGCTTCATGTGATAACGACGGCAAGTTTGAAGATTCCGGCGATAGTCGGAAAAGATTGGGACCCGTTAAGGGTAAAAGAGGATGCTACAAAAGAAAAAAGAGATCGGAGACGTGTACTATAGAGTCGACTATACTTGAGGACGCATTTTCTTGGAGGAAATATGGACAAAAGGAGATTCTTAATGCCAAATTCCCAAGAAGTTACTTTAGATGCACACACAAGTATACCCAAGGGTGCAAGGCAACAAAGCAAGTCCAGAAGGTTGAGCTCGAACCCAAGATGTTCAGTATCACATACATAGGAAACCACACGTGTAACACCAACGCAGAAACTCCCAAGAGCAAGACTTGTGACCATCATGATGAGATCTTCATGGATTCCGAAGATCACAAGAGTCCTAGTTTATCTACCTCAATGAAGGAAGAAGACAATCCTCATCGTCATCATGGTTCGTCCACGGAGAATGACTTGTCATTGGTGTGGCCAGAAATGGTTTTCGAAGAAGATTATCATCATCAGGCCAGTTACGTCAATGGGAAAACGAGTACATCTATCGATGTTTTGGGTTCTCAGGATCTCATGGTGTTTGGAGGTGGCGGCGATTTCGAGTTTAGCGAAAATGAGCACTTCTCTATCTTCAGTTCATGTTCGAATCTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

294

Amino Acids

32.94

Weight (kDa)

5.85

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	120 - 180	3.1e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40750 AT3G56400
fragaria_vesca	FvH4_7g26030
malus_domestica	MD01G1168600.v1.1 MD07G1234700.v1.1
prunus_persica	Prupe.2G265000_v2.0.a1
pyrus_communis	pycom01g18160 pycom07g21230
rosa_chinensis	RchiOBHm_Chr1g0372441 RchiOBHm_Chr1g0372521
rosa_laevigata	RLG00000026893 RLG00000026898
rosa_multiflora	Rmu_co8027390.1_g000001 Rmu_co8028224.1_g000001 Rmu_sc0001755.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284920
rosa_rugosa	Rorug01G0371900
rosa_samantha	Rh1AG380400 Rh1AG381100 Rh1BG344000 Rh1BG344500 Rh1CG357400 Rh1DG375200 Rh1DG375700
rosa_wichuraiana	Rw1G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	347, 446
AciI	CCGC	2 cut(s)	201, 819
AclWI	GGATC	3 cut(s)	120, 220, 804
AcoI	YGGCCR	1 cut(s)	704
AcsI	RAATTY	1 cut(s)	410
AcuI	CTGAAG	2 cut(s)	59, 844
AcvI	CACGTG	1 cut(s)	534
AfaI	GTAC	2 cut(s)	337, 769
AfiI	CCNNNNNNNGG	2 cut(s)	101, 290
AflIII	ACRYGT	3 cut(s)	332, 531, 533
AgsI	TTSAA	3 cut(s)	50, 142, 251
AjiI	CACGTC	1 cut(s)	333
AluBI	AGCT	3 cut(s)	25, 73, 490
AluI	AGCT	3 cut(s)	25, 73, 490
Alw21I	GWGCWC	2 cut(s)	492, 849
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	3 cut(s)	120, 220, 804
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	3 cut(s)	52, 704, 741
ApoI	RAATTY	1 cut(s)	410
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspS9I	GGNCC	2 cut(s)	99, 281
AsuC2I	CCSGG	2 cut(s)	96, 97
AsuII	TTCGAA	3 cut(s)	171, 720, 872
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	99, 281
BalI	TGGCCA	1 cut(s)	706
BanII	GRGCYC	1 cut(s)	492
BbrPI	CACGTG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	2 cut(s)	492, 849
BccI	CCATC	3 cut(s)	158, 185, 585
BceAI	ACGGC	2 cut(s)	188, 256
BcnI	CCSGG	2 cut(s)	96, 97
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	3 cut(s)	107, 116, 621
BfmI	CTRYAG	1 cut(s)	339
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	2 cut(s)	201, 820
BlsI	GCNGC	2 cut(s)	202, 821
Bme1390I	CCNGG	2 cut(s)	96, 97
Bme18I	GGWCC	2 cut(s)	99, 281
BmeT110I	CYCGRG	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	333
BmgT120I	GGNCC	2 cut(s)	99, 281
BmiI	GGNNCC	3 cut(s)	100, 282, 283
BmrFI	CCNGG	2 cut(s)	96, 97
BmsI	GCATC	2 cut(s)	293, 422
BpiI	GAAGAC	1 cut(s)	654
BplI	GAGNNNNNCTC	2 cut(s)	836, 868
Bpu14I	TTCGAA	3 cut(s)	171, 720, 872
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	96, 97
Bsa29I	ATCGAT	1 cut(s)	777
BsaAI	YACGTR	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	732
BsaJI	CCNNGG	3 cut(s)	95, 451, 678
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 290
Bse1I	ACTGG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	732
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	3 cut(s)	95, 451, 678
BseGI	GGATG	2 cut(s)	191, 308
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	2 cut(s)	101, 290
BseMII	CTCAG	2 cut(s)	83, 806
BseNI	ACTGG	1 cut(s)	744
BseRI	GAGGAG	4 cut(s)	74, 172, 175, 178
BshFI	GGCC	3 cut(s)	54, 706, 743
BshVI	ATCGAT	1 cut(s)	777
BsiHKAI	GWGCWC	2 cut(s)	492, 849
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	3 cut(s)	96, 102, 258
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	2 cut(s)	101, 290
BsmAI	GTCTC	1 cut(s)	323
BsmBI	CGTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	3 cut(s)	54, 706, 743
BsoBI	CYCGRG	1 cut(s)	95
Bsp119I	TTCGAA	3 cut(s)	171, 720, 872
Bsp1286I	GDGCHC	2 cut(s)	492, 849
Bsp143I	GATC	6 cut(s)	112, 212, 323, 588, 607, 796
BspACI	CCGC	2 cut(s)	201, 819
BspANI	GGCC	3 cut(s)	54, 706, 743
BspCNI	CTCAG	2 cut(s)	82, 805
BspDI	ATCGAT	1 cut(s)	777
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	3 cut(s)	100, 282, 283
BspPI	GGATC	3 cut(s)	120, 220, 804
BspT104I	TTCGAA	3 cut(s)	171, 720, 872
BsrI	ACTGG	1 cut(s)	744
BssECI	CCNNGG	3 cut(s)	95, 451, 678
BssMI	GATC	6 cut(s)	112, 212, 323, 588, 607, 796
BssNAI	GTATAC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	451
Bst1107I	GTATAC	1 cut(s)	447
BstBAI	YACGTR	1 cut(s)	534
BstBI	TTCGAA	3 cut(s)	171, 720, 872
BstDEI	CTNAG	3 cut(s)	69, 130, 792
BstDSI	CCRYGG	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	191, 308
BstKTI	GATC	6 cut(s)	115, 215, 326, 591, 610, 799
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	6 cut(s)	112, 212, 323, 588, 607, 796
BstSCI	CCNGG	2 cut(s)	94, 95
BstSFI	CTRYAG	1 cut(s)	339
BstV2I	GAAGAC	1 cut(s)	654
BstX2I	RGATCY	4 cut(s)	112, 212, 588, 796
BstYI	RGATCY	4 cut(s)	112, 212, 588, 796
BstZ17I	GTATAC	1 cut(s)	447
Bsu15I	ATCGAT	1 cut(s)	777
BsuRI	GGCC	3 cut(s)	54, 706, 743
BsuTUI	ATCGAT	1 cut(s)	777
BtgI	CCRYGG	1 cut(s)	678
BtrI	CACGTC	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	191, 308
CciI	TCATGA	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	99, 281
Cfr9I	CCCGGG	1 cut(s)	95
ClaI	ATCGAT	1 cut(s)	777
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	336, 768
CviAII	CATG	7 cut(s)	56, 228, 581, 595, 668, 802, 867
CviJI	RGCY	7 cut(s)	25, 54, 73, 122, 490, 706, 743
CviKI_1	RGCY	7 cut(s)	25, 54, 73, 122, 490, 706, 743
CviQI	GTAC	2 cut(s)	336, 768
DdeI	CTNAG	3 cut(s)	69, 130, 792
DpnI	GATC	6 cut(s)	114, 214, 325, 590, 609, 798
DpnII	GATC	6 cut(s)	112, 212, 323, 588, 607, 796
EaeI	YGGCCR	1 cut(s)	704
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	492
Eco47I	GGWCC	2 cut(s)	99, 281
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	59, 844
Eco72I	CACGTG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	7 cut(s)	59, 231, 584, 598, 671, 805, 870
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	7 cut(s)	55, 227, 580, 594, 667, 801, 866
FblI	GTMKAC	2 cut(s)	347, 446
Fnu4HI	GCNGC	2 cut(s)	201, 820
FokI	GGATG	2 cut(s)	178, 315
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	2 cut(s)	201, 820
FspBI	CTAG	3 cut(s)	107, 116, 621
GluI	GCNGC	2 cut(s)	201, 820
HaeIII	GGCC	3 cut(s)	54, 706, 743
HapII	CCGG	3 cut(s)	96, 102, 258
HgaI	GACGC	1 cut(s)	371
Hin1II	CATG	7 cut(s)	59, 231, 584, 598, 671, 805, 870
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	6 cut(s)	254, 344, 397, 599, 616, 874
HpaII	CCGG	3 cut(s)	96, 102, 258
Hpy166II	GTNNAC	4 cut(s)	336, 348, 447, 678
Hpy188I	TCNGA	3 cut(s)	270, 328, 604
Hpy188III	TCNNGA	6 cut(s)	107, 161, 478, 581, 794, 882
Hpy8I	GTNNAC	4 cut(s)	336, 348, 447, 678
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	44, 178, 475, 634
HpyCH4IV	ACGT	3 cut(s)	332, 533, 750
HpyCH4V	TGCA	2 cut(s)	435, 459
HpyF3I	CTNAG	3 cut(s)	69, 130, 792
HpySE526I	ACGT	3 cut(s)	332, 533, 750
Hsp92II	CATG	7 cut(s)	59, 231, 584, 598, 671, 805, 870
KflI	GGGWCCC	1 cut(s)	281
Kzo9I	GATC	6 cut(s)	112, 212, 323, 588, 607, 796
LpnPI	CCDG	8 cut(s)	109, 115, 271, 491, 720, 725, 757, 779
LweI	GCATC	2 cut(s)	293, 422
MaeI	CTAG	3 cut(s)	107, 116, 621
MaeII	ACGT	3 cut(s)	332, 533, 750
MaeIII	GTNAC	4 cut(s)	422, 536, 572, 746
MalI	GATC	6 cut(s)	114, 214, 325, 590, 609, 798
MboI	GATC	6 cut(s)	112, 212, 323, 588, 607, 796
MboII	GAAGA	8 cut(s)	263, 583, 617, 656, 659, 734, 737, 850
MflI	RGATCY	4 cut(s)	112, 212, 588, 796
MhlI	GDGCHC	2 cut(s)	492, 849
MlsI	TGGCCA	1 cut(s)	706
MluCI	AATT	1 cut(s)	410
MluNI	TGGCCA	1 cut(s)	706
MlyI	GAGTC	2 cut(s)	353, 625
MmeI	TCCRAC	1 cut(s)	248
Mox20I	TGGCCA	1 cut(s)	706
MscI	TGGCCA	1 cut(s)	706
MseI	TTAA	4 cut(s)	27, 62, 288, 402
MslI	CAYNNNNRTG	2 cut(s)	582, 700
Msp20I	TGGCCA	1 cut(s)	706
MspI	CCGG	3 cut(s)	96, 102, 258
MspR9I	CCNGG	2 cut(s)	96, 97
NciI	CCSGG	2 cut(s)	96, 97
NdeII	GATC	6 cut(s)	112, 212, 323, 588, 607, 796
NlaIII	CATG	7 cut(s)	59, 231, 584, 598, 671, 805, 870
NlaIV	GGNNCC	3 cut(s)	100, 282, 283
NmuCI	GTSAC	1 cut(s)	572
NspV	TTCGAA	3 cut(s)	171, 720, 872
PagI	TCATGA	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	834
PfeI	GAWTC	4 cut(s)	254, 397, 599, 874
PkrI	GCNGC	2 cut(s)	202, 821
PleI	GAGTC	2 cut(s)	352, 624
PmaCI	CACGTG	1 cut(s)	534
PmlI	CACGTG	1 cut(s)	534
PpsI	GAGTC	2 cut(s)	352, 624
Ppu21I	YACGTR	1 cut(s)	534
PpuMI	RGGWCCY	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	534
PspN4I	GGNNCC	3 cut(s)	100, 282, 283
PspPI	GGNCC	2 cut(s)	99, 281
PspPPI	RGGWCCY	1 cut(s)	281
PsuI	RGATCY	4 cut(s)	112, 212, 588, 796
RsaI	GTAC	2 cut(s)	337, 769
RsaNI	GTAC	2 cut(s)	336, 768
RseI	CAYNNNNRTG	2 cut(s)	582, 700
SacI	GAGCTC	1 cut(s)	492
SalI	GTCGAC	1 cut(s)	346
SaqAI	TTAA	4 cut(s)	27, 62, 288, 402
SatI	GCNGC	2 cut(s)	201, 820
Sau3AI	GATC	6 cut(s)	112, 212, 323, 588, 607, 796
Sau96I	GGNCC	2 cut(s)	99, 281
SchI	GAGTC	2 cut(s)	353, 625
ScrFI	CCNGG	2 cut(s)	96, 97
SduI	GDGCHC	2 cut(s)	492, 849
SfaNI	GCATC	2 cut(s)	293, 422
SfcI	CTRYAG	1 cut(s)	339
SfuI	TTCGAA	3 cut(s)	171, 720, 872
SinI	GGWCC	2 cut(s)	99, 281
SmaI	CCCGGG	1 cut(s)	97
SmiMI	CAYNNNNRTG	2 cut(s)	582, 700
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	2 cut(s)	201, 819
SspMI	CTAG	3 cut(s)	107, 116, 621
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	94, 95
StyI	CCWWGG	1 cut(s)	451
TaiI	ACGT	3 cut(s)	335, 536, 753
TaqI	TCGA	7 cut(s)	171, 347, 492, 720, 777, 828, 872
TasI	AATT	1 cut(s)	410
TatI	WGTACW	2 cut(s)	335, 767
TauI	GCSGC	2 cut(s)	203, 822
TfiI	GAWTC	4 cut(s)	254, 397, 599, 874
Tru1I	TTAA	4 cut(s)	27, 62, 288, 402
Tru9I	TTAA	4 cut(s)	27, 62, 288, 402
TseFI	GTSAC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	5 cut(s)	50, 216, 583, 653, 855
TspGWI	ACGGA	2 cut(s)	145, 695
TspMI	CCCGGG	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	99, 281
XapI	RAATTY	1 cut(s)	410
XbaI	TCTAGA	1 cut(s)	106
XmaI	CCCGGG	1 cut(s)	95
XmiI	GTMKAC	2 cut(s)	347, 446
XspI	CTAG	3 cut(s)	107, 116, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.