Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007105

Physical Location & Seq

Genomic Coordinates Reverse (-)

30816225 .. 30818950

Gene Structure 2726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1234700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGAACCAACCACAAGAGACTGATCGAGGAGCTACTAGAAGGCCGGAAGACGGCGGTGGAGCTTCAGAGTCTGCTCCACAAGCCGTTCGGAGATCGTGAATCGGCGGAGGAGCTTTTGATGAAGATCATGACAACATTCACAGAGAGTCTCTCTGTTCTGACTGCTTCTAACGGCCATGAGGATCACCAGTCTGCTGCTTCCGGTGAGGTTTATCAGGTCAAGCCTGAACCTTCCCATGTGGAGCACTCGCATTGCGGTGACCGGAGCTCTGAAGGTTCCGGTGAGAGTCCAAAGACTCAGGCTTTCAAGGATCGGAGAGGTAGCTACAAGAGGAGAAAGACATCTCAATCATGGAAAGTAATCTCTACCAAAATTGAAGATGGTCAGGCTTGGAGAAAATACGGCCAAAAGATAATCCTCAAAGCTTCATATCCAAGGGCTTACTTCAGATGCACAAGAAAGTATGATCAAGGTTGCAAGGCAACCAAGCAGGTCCAACAAATCCAAGACAACCCACGCACGTACCAAATCACCTACATTGGCGAGCACACGTGCAGAACCATGATCAAGGCTTCTCCAATGATCATCGGCCCTGATCTTTGGCCATCTCAGACTGTTAGCTCAGAATCTGGGTCCCCACATCGCCAAAACCCTAATTTCTTTGGCTCATCCTCGTCGTCCATTCCCATCGTCAAACAAGAAGATTCCAAAGTGGGGACACCAAGTGATGTAACGGACAACAATGTGTGGCTTGGTTTGAAGGATCACTTGGATTTTTCCGAGCCTACCGGAATCTGCGTGTCTTCCAATGAGAACGTGGTTTCAAACATGCAGTGGGACGACATGGTTAAGTCTATTAATTTTGAGTGTGATATTAATTTTGATGAAGGTTTTGATGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

303

Amino Acids

33.97

Weight (kDa)

6.38

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	127 - 186	7.4e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40750 AT3G56400
fragaria_vesca	FvH4_7g26030
malus_domestica	MD01G1168600.v1.1 MD07G1234700.v1.1
prunus_persica	Prupe.2G265000_v2.0.a1
pyrus_communis	pycom01g18160 pycom07g21230
rosa_chinensis	RchiOBHm_Chr1g0372441 RchiOBHm_Chr1g0372521
rosa_laevigata	RLG00000026893 RLG00000026898
rosa_multiflora	Rmu_co8027390.1_g000001 Rmu_co8028224.1_g000001 Rmu_sc0001755.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284920
rosa_rugosa	Rorug01G0371900
rosa_samantha	Rh1AG380400 Rh1AG381100 Rh1BG344000 Rh1BG344500 Rh1CG357400 Rh1DG375200 Rh1DG375700
rosa_wichuraiana	Rw1G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AciI	CCGC	3 cut(s)	56, 107, 258
AclWI	GGATC	3 cut(s)	192, 321, 774
AcoI	YGGCCR	3 cut(s)	175, 406, 605
AcuI	CTGAAG	3 cut(s)	50, 294, 433
AcvI	CACGTG	1 cut(s)	555
AdeI	CACNNNGTG	1 cut(s)	728
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	52, 717
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	4 cut(s)	310, 380, 763, 828
AjuI	GAANNNNNNNTTGG	2 cut(s)	755, 787
AluBI	AGCT	7 cut(s)	34, 64, 115, 270, 327, 428, 624
AluI	AGCT	7 cut(s)	34, 64, 115, 270, 327, 428, 624
Alw21I	GWGCWC	3 cut(s)	249, 272, 552
Alw26I	GTCTC	2 cut(s)	13, 155
AlwI	GGATC	3 cut(s)	192, 321, 774
AlwNI	CAGNNNCTG	2 cut(s)	73, 632
AoxI	GGCC	5 cut(s)	43, 175, 406, 592, 605
ApeKI	GCWGC	1 cut(s)	197
AseI	ATTAAT	2 cut(s)	861, 879
AspS9I	GGNCC	3 cut(s)	496, 593, 636
AsuHPI	GGTGA	5 cut(s)	179, 218, 272, 296, 526
AvaII	GGWCC	2 cut(s)	496, 636
BaeI	ACNNNNGTAYC	2 cut(s)	509, 542
BalI	TGGCCA	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	272
BbrPI	CACGTG	1 cut(s)	555
BbsI	GAAGAC	2 cut(s)	56, 798
Bbv12I	GWGCWC	3 cut(s)	249, 272, 552
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	3 cut(s)	377, 616, 698
BceAI	ACGGC	4 cut(s)	69, 70, 190, 421
BclI	TGATCA	3 cut(s)	469, 567, 585
BcoDI	GTCTC	2 cut(s)	13, 155
BfaI	CTAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	2 cut(s)	496, 636
BmgT120I	GGNCC	3 cut(s)	496, 593, 636
BmiI	GGNNCC	4 cut(s)	7, 280, 637, 638
BmsI	GCATC	2 cut(s)	443, 889
BpiI	GAAGAC	2 cut(s)	56, 798
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BsaAI	YACGTR	2 cut(s)	525, 555
BsaBI	GATNNNNATC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	437
BsaWI	WCCGGW	4 cut(s)	203, 264, 281, 791
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 717
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	1 cut(s)	671
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	2 cut(s)	52, 717
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	3 cut(s)	314, 626, 639
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	3 cut(s)	44, 125, 349
BseXI	GCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	577
BshFI	GGCC	5 cut(s)	45, 177, 408, 594, 607
BsiHKAI	GWGCWC	3 cut(s)	249, 272, 552
BsiSI	CCGG	5 cut(s)	46, 204, 265, 282, 792
BslFI	GGGAC	3 cut(s)	622, 733, 854
BslI	CCNNNNNNNGG	2 cut(s)	52, 717
BsmAI	GTCTC	2 cut(s)	13, 155
BsmFI	GGGAC	3 cut(s)	622, 733, 854
BsnI	GGCC	5 cut(s)	45, 177, 408, 594, 607
Bsp1286I	GDGCHC	3 cut(s)	249, 272, 552
BspACI	CCGC	3 cut(s)	56, 107, 258
BspANI	GGCC	5 cut(s)	45, 177, 408, 594, 607
BspCNI	CTCAG	3 cut(s)	313, 625, 638
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	4 cut(s)	7, 280, 637, 638
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	3 cut(s)	192, 321, 774
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	619
BstBAI	YACGTR	2 cut(s)	525, 555
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	3 cut(s)	300, 612, 625
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	671
BstMAI	GTCTC	2 cut(s)	13, 155
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	835
BstPI	GGTNACC	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	2 cut(s)	56, 798
BsuRI	GGCC	5 cut(s)	45, 177, 408, 594, 607
BtgZI	GCGATG	1 cut(s)	629
BtsCI	GGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	1 cut(s)	842
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	548
CaiI	CAGNNNCTG	2 cut(s)	73, 632
CciI	TCATGA	1 cut(s)	129
Cfr13I	GGNCC	3 cut(s)	496, 593, 636
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	7 cut(s)	130, 179, 239, 354, 565, 832, 847
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	3 cut(s)	300, 612, 625
DraIII	CACNNNGTG	1 cut(s)	728
EaeI	YGGCCR	3 cut(s)	175, 406, 605
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	496, 636
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	3 cut(s)	50, 294, 433
Eco72I	CACGTG	1 cut(s)	555
Eco91I	GGTNACC	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	636
EcoO65I	GGTNACC	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	7 cut(s)	133, 182, 242, 357, 568, 835, 850
FaiI	YATR	9 cut(s)	131, 180, 240, 355, 433, 468, 566, 833, 848
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	3 cut(s)	622, 733, 854
FatI	CATG	7 cut(s)	129, 178, 238, 353, 564, 831, 846
FbaI	TGATCA	3 cut(s)	469, 567, 585
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	658
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	5 cut(s)	45, 177, 408, 594, 607
HapII	CCGG	5 cut(s)	46, 204, 265, 282, 792
Hin1II	CATG	7 cut(s)	133, 182, 242, 357, 568, 835, 850
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	8 cut(s)	70, 101, 148, 289, 298, 629, 707, 795
HpaII	CCGG	5 cut(s)	46, 204, 265, 282, 792
HphI	GGTGA	5 cut(s)	179, 218, 272, 296, 526
Hpy188I	TCNGA	9 cut(s)	69, 92, 162, 274, 318, 452, 615, 628, 784
Hpy188III	TCNNGA	2 cut(s)	98, 130
Hpy99I	CGWCG	1 cut(s)	682
HpyAV	CCTTC	5 cut(s)	35, 243, 269, 757, 884
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	3 cut(s)	524, 554, 819
HpyCH4V	TGCA	4 cut(s)	456, 480, 558, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	3 cut(s)	300, 612, 625
HpySE526I	ACGT	3 cut(s)	524, 554, 819
Hsp92II	CATG	7 cut(s)	133, 182, 242, 357, 568, 835, 850
KflI	GGGWCCC	1 cut(s)	636
Ksp22I	TGATCA	3 cut(s)	469, 567, 585
LmnI	GCTCC	6 cut(s)	31, 61, 81, 112, 244, 267
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	443, 889
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	3 cut(s)	524, 554, 819
MaeIII	GTNAC	2 cut(s)	260, 733
MboII	GAAGA	5 cut(s)	61, 136, 392, 716, 798
MhlI	GDGCHC	3 cut(s)	249, 272, 552
MlsI	TGGCCA	1 cut(s)	607
MluCI	AATT	4 cut(s)	375, 658, 862, 880
MluNI	TGGCCA	1 cut(s)	607
MlyI	GAGTC	4 cut(s)	79, 157, 292, 298
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	8 cut(s)	22, 103, 175, 202, 314, 327, 431, 685
Mox20I	TGGCCA	1 cut(s)	607
MscI	TGGCCA	1 cut(s)	607
MseI	TTAA	4 cut(s)	852, 861, 879, 907
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	607
MspI	CCGG	5 cut(s)	46, 204, 265, 282, 792
MwoI	GCNNNNNNNGC	1 cut(s)	82
NlaIII	CATG	7 cut(s)	133, 182, 242, 357, 568, 835, 850
NlaIV	GGNNCC	4 cut(s)	7, 280, 637, 638
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	835
PagI	TCATGA	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	101, 629, 707, 795
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	4 cut(s)	78, 156, 292, 297
PmaCI	CACGTG	1 cut(s)	555
PmlI	CACGTG	1 cut(s)	555
PpsI	GAGTC	4 cut(s)	78, 156, 292, 297
Ppu21I	YACGTR	2 cut(s)	525, 555
PpuMI	RGGWCCY	1 cut(s)	636
PshBI	ATTAAT	2 cut(s)	861, 879
Psp124BI	GAGCTC	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	636
PspCI	CACGTG	1 cut(s)	555
PspEI	GGTNACC	1 cut(s)	260
PspN4I	GGNNCC	4 cut(s)	7, 280, 637, 638
PspPI	GGNCC	3 cut(s)	496, 593, 636
PspPPI	RGGWCCY	1 cut(s)	636
PstNI	CAGNNNCTG	2 cut(s)	73, 632
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	4 cut(s)	852, 861, 879, 907
SatI	GCNGC	1 cut(s)	198
Sau96I	GGNCC	3 cut(s)	496, 593, 636
SchI	GAGTC	4 cut(s)	79, 157, 292, 298
SduI	GDGCHC	3 cut(s)	249, 272, 552
SfaNI	GCATC	2 cut(s)	443, 889
SinI	GGWCC	2 cut(s)	496, 636
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	4 cut(s)	375, 658, 862, 880
SsiI	CCGC	3 cut(s)	56, 107, 258
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	3 cut(s)	527, 557, 822
TaqI	TCGA	1 cut(s)	27
TasI	AATT	4 cut(s)	375, 658, 862, 880
TfiI	GAWTC	4 cut(s)	101, 629, 707, 795
Tru1I	TTAA	4 cut(s)	852, 861, 879, 907
Tru9I	TTAA	4 cut(s)	852, 861, 879, 907
TscAI	CASTG	1 cut(s)	842
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	137, 420, 903
TspGWI	ACGGA	1 cut(s)	752
TspRI	CASTG	1 cut(s)	842
VpaK11BI	GGWCC	2 cut(s)	496, 636
VspI	ATTAAT	2 cut(s)	861, 879
XceI	RCATGY	1 cut(s)	835
XcmI	CCANNNNNNNNNTGG	1 cut(s)	817
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.