FvH4_7g26030
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
19783557 .. 19786006
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26030.t1

Sequence Viewer

Length: 1023 bp
ATGGCTACAACTTGGCTTGAAGCACTGCCGGCCCAGCACAAAAGGCTCATCATGAACGAACTAGTTCACGGCCGGAACAGGGCGAGGGAGCTTCAGTCTCTCCTCAACAACCGCGGCCATGGCTCGACGAGTTCGCGTTCGGAGGAGGAGCTTGTGATGGAGATCGTGAAGTCTTTCAGTGAGAGTCTTTCTGTTCTGAGTGAGTCGTCGGCTAAGTTTGGTGGTGATGATCAACAGTACTCCGGTACTACTGGATGTGGAGGGGGTGAGACTGTTAAAGCGGAGCAGTCCCATGTGGAACATTCGCATTGCGGTGACCGGAGTTTTGAAGATTCCGGCGAGAGCAAGAAGAGGCCGGGTGTGAAGGATCGGAGAGGTTGCTACAAGAGAAGAAAGAACTCAGAGTCATGGGCAACGGTCTCATCCACAGTTGAAGATGGTCAGGCTTGGAGGAAATATGGCCAGAAGGAAATCCTCAATGCACCATATCCAAGGGCTTACTTCAGATGTACTCGCAAGTATGATCAAGGTTGCCAAGCAACCAAACAAGTCCAACAAACCCAAGACACACCAAAACTGTACAAAACCACCTACATTGGAAACCACACGTGCAGAATGATTAGGGCCCCACAGACGATAATGGGCGCTTCCCATCCTCCTGCTTTGGATTCCCATGCTCCTCCTCGAGCTACTGTTAGCTCGGAATCCGGGTCGACTCCTATTTGCAATAAGAAAGAACATCACGGTGATCATGGTGGTCATCTCTCTAGCTCATTGTCGATGATTCCCTTCCTTCCGGTGAAGAAAGAAGAGCCCAAGGAGGGGACGACGACTTCGAGTGGTCTGACGGACAACCTTAACGATACAAGTGATATGTGGCCGGGGTTCCATTTTGGGTTCCCTGAGGCTGAGACTACTGTATTGTCTGATGAAAATGTGGTTTCGAACATGCAGTTCTTGGACATGCACTTGGTGAAGTCTATTGATGATTTCGAGAAGTTTGATTTTGATCAAGTCTATTGA

Protein Analysis

341

Amino Acids

37.93

Weight (kDa)

6.43

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 145 - 204 3.5e-23 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 713
AccII CGCG 2 cut(s) 114, 136
AciI CCGC 4 cut(s) 112, 114, 281, 312
AclWI GGATC 1 cut(s) 375
AcoI YGGCCR 4 cut(s) 70, 115, 460, 878
AcuI CTGAAG 2 cut(s) 77, 487
AcvI CACGTG 1 cut(s) 609
AdeI CACNNNGTG 1 cut(s) 973
AfaI GTAC 4 cut(s) 239, 247, 511, 581
AfiI CCNNNNNNNGG 3 cut(s) 79, 821, 822
AflIII ACRYGT 1 cut(s) 606
AgsI TTSAA 3 cut(s) 20, 329, 434
AhlI ACTAGT 1 cut(s) 61
AluBI AGCT 5 cut(s) 91, 151, 689, 699, 771
AluI AGCT 5 cut(s) 91, 151, 689, 699, 771
Alw26I GTCTC 4 cut(s) 102, 263, 424, 905
AlwI GGATC 1 cut(s) 375
Ama87I CYCGRG 1 cut(s) 684
AoxI GGCC 7 cut(s) 30, 70, 115, 353, 460, 624, 878
ApaI GGGCCC 1 cut(s) 628
ArsI GACNNNNNNTTYG 4 cut(s) 308, 340, 817, 849
Asp700I GAANNNNTTC 2 cut(s) 63, 173
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 3 cut(s) 31, 624, 625
AsuC2I CCSGG 3 cut(s) 357, 709, 882
AsuHPI GGTGA 6 cut(s) 236, 278, 326, 758, 811, 985
AsuII TTCGAA 1 cut(s) 944
AvaI CYCGRG 1 cut(s) 684
AxyI CCTNAGG 1 cut(s) 903
BaeGI GKGCMC 1 cut(s) 628
BalI TGGCCA 1 cut(s) 462
BanII GRGCYC 2 cut(s) 628, 816
BbrPI CACGTG 1 cut(s) 609
BccI CCATC 3 cut(s) 151, 431, 660
BceAI ACGGC 1 cut(s) 85
BclI TGATCA 4 cut(s) 229, 523, 748, 1009
BcnI CCSGG 3 cut(s) 357, 709, 882
BcoDI GTCTC 4 cut(s) 102, 263, 424, 905
BcuI ACTAGT 1 cut(s) 61
BfaI CTAG 2 cut(s) 62, 768
BfoI RGCGCY 1 cut(s) 648
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
BmcAI AGTACT 1 cut(s) 239
Bme1390I CCNGG 3 cut(s) 357, 709, 882
BmeT110I CYCGRG 1 cut(s) 684
BmgT120I GGNCC 3 cut(s) 31, 624, 625
BmiI GGNNCC 4 cut(s) 626, 627, 887, 899
BmrFI CCNGG 3 cut(s) 357, 709, 882
Bpu14I TTCGAA 1 cut(s) 944
BpuMI CCSGG 3 cut(s) 357, 709, 882
BsaAI YACGTR 1 cut(s) 609
BsaBI GATNNNNATC 2 cut(s) 161, 1008
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 5 cut(s) 112, 118, 491, 816, 881
BsaWI WCCGGW 3 cut(s) 242, 318, 796
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 821, 822
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 256
Bse21I CCTNAGG 1 cut(s) 903
Bse3DI GCAATG 1 cut(s) 307
Bse8I GATNNNNATC 2 cut(s) 161, 1008
BseDI CCNNGG 5 cut(s) 112, 118, 491, 816, 881
BseGI GGATG 3 cut(s) 260, 422, 652
BseJI GATNNNNATC 2 cut(s) 161, 1008
BseLI CCNNNNNNNGG 3 cut(s) 79, 821, 822
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 4 cut(s) 188, 414, 894, 900
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 5 cut(s) 92, 158, 161, 669, 672
BseSI GKGCMC 1 cut(s) 628
BseX3I CGGCCG 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 631
Bsh1236I CGCG 2 cut(s) 114, 136
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 7 cut(s) 32, 72, 117, 355, 462, 626, 880
BsiEI CGRYCG 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 684
BsiSI CCGG 9 cut(s) 29, 73, 243, 319, 336, 356, 708, 797, 881
BslFI GGGAC 2 cut(s) 274, 838
BslI CCNNNNNNNGG 3 cut(s) 79, 821, 822
BsmAI GTCTC 4 cut(s) 102, 263, 424, 905
BsmFI GGGAC 2 cut(s) 274, 838
BsnI GGCC 7 cut(s) 32, 72, 117, 355, 462, 626, 880
Bso31I GGTCTC 1 cut(s) 424
BsoBI CYCGRG 1 cut(s) 684
Bsp119I TTCGAA 1 cut(s) 944
Bsp120I GGGCCC 1 cut(s) 624
Bsp1286I GDGCHC 2 cut(s) 628, 816
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 6 cut(s) 162, 229, 367, 523, 748, 1009
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 4 cut(s) 112, 114, 281, 312
BspANI GGCC 7 cut(s) 32, 72, 117, 355, 462, 626, 880
BspCNI CTCAG 4 cut(s) 189, 413, 895, 901
BspFNI CGCG 2 cut(s) 114, 136
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 4 cut(s) 626, 627, 887, 899
BspPI GGATC 1 cut(s) 375
BspQI GCTCTTC 1 cut(s) 804
BspT104I TTCGAA 1 cut(s) 944
BspTNI GGTCTC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 28
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 5 cut(s) 112, 118, 491, 816, 881
BssMI GATC 6 cut(s) 162, 229, 367, 523, 748, 1009
BssT1I CCWWGG 3 cut(s) 118, 491, 816
Bst4CI ACNGT 8 cut(s) 237, 274, 418, 430, 579, 694, 746, 919
Bst6I CTCTTC 2 cut(s) 344, 804
BstAUI TGTACA 1 cut(s) 579
BstBAI YACGTR 1 cut(s) 609
BstBI TTCGAA 1 cut(s) 944
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 5 cut(s) 197, 213, 400, 903, 909
BstDSI CCRYGG 2 cut(s) 112, 118
BstEII GGTNACC 1 cut(s) 314
BstF5I GGATG 3 cut(s) 260, 422, 652
BstFNI CGCG 2 cut(s) 114, 136
BstH2I RGCGCY 1 cut(s) 648
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 6 cut(s) 165, 232, 370, 526, 751, 1012
BstMAI GTCTC 4 cut(s) 102, 263, 424, 905
BstMBI GATC 6 cut(s) 162, 229, 367, 523, 748, 1009
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 4 cut(s) 29, 34, 43, 120
BstNSI RCATGY 2 cut(s) 952, 967
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 3 cut(s) 355, 707, 880
BstSLI GKGCMC 1 cut(s) 628
BstUI CGCG 2 cut(s) 114, 136
BstZI CGGCCG 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 903
BsuRI GGCC 7 cut(s) 32, 72, 117, 355, 462, 626, 880
BtgI CCRYGG 2 cut(s) 112, 118
BtsCI GGATG 3 cut(s) 260, 422, 652
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 2 cut(s) 23, 184
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 1 cut(s) 51
CfoI GCGC 1 cut(s) 647
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 3 cut(s) 31, 624, 625
Cfr42I CCGCGG 1 cut(s) 115
Csp6I GTAC 4 cut(s) 238, 246, 510, 580
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 8 cut(s) 52, 119, 293, 408, 674, 752, 949, 964
CviQI GTAC 4 cut(s) 238, 246, 510, 580
DdeI CTNAG 5 cut(s) 197, 213, 400, 903, 909
DpnI GATC 6 cut(s) 164, 231, 369, 525, 750, 1011
DpnII GATC 6 cut(s) 162, 229, 367, 523, 748, 1009
DraIII CACNNNGTG 1 cut(s) 973
EaeI YGGCCR 4 cut(s) 70, 115, 460, 878
EagI CGGCCG 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 344, 804
EarI CTCTTC 2 cut(s) 344, 804
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 3 cut(s) 118, 491, 816
Eco24I GRGCYC 2 cut(s) 628, 816
Eco31I GGTCTC 1 cut(s) 424
Eco52I CGGCCG 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 77, 487
Eco72I CACGTG 1 cut(s) 609
Eco81I CCTNAGG 1 cut(s) 903
Eco88I CYCGRG 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 314
EcoO109I RGGNCCY 2 cut(s) 624, 625
EcoO65I GGTNACC 1 cut(s) 314
EcoT14I CCWWGG 3 cut(s) 118, 491, 816
EcoT38I GRGCYC 2 cut(s) 628, 816
ErhI CCWWGG 3 cut(s) 118, 491, 816
FaeI CATG 8 cut(s) 55, 122, 296, 411, 677, 755, 952, 967
FaqI GGGAC 2 cut(s) 274, 838
FatI CATG 8 cut(s) 51, 118, 292, 407, 673, 751, 948, 963
FbaI TGATCA 4 cut(s) 229, 523, 748, 1009
FblI GTMKAC 1 cut(s) 713
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 3 cut(s) 267, 409, 639
FriOI GRGCYC 2 cut(s) 628, 816
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 2 cut(s) 62, 768
GlaI GCGC 1 cut(s) 646
GluI GCNGC 1 cut(s) 115
GsaI CCCAGC 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 648
HaeIII GGCC 7 cut(s) 32, 72, 117, 355, 462, 626, 880
HapII CCGG 9 cut(s) 29, 73, 243, 319, 336, 356, 708, 797, 881
HhaI GCGC 1 cut(s) 647
Hin1II CATG 8 cut(s) 55, 122, 296, 411, 677, 755, 952, 967
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HinfI GANTC 8 cut(s) 184, 203, 332, 404, 668, 704, 715, 784
HpaII CCGG 9 cut(s) 29, 73, 243, 319, 336, 356, 708, 797, 881
HphI GGTGA 6 cut(s) 236, 278, 326, 758, 811, 985
Hpy166II GTNNAC 2 cut(s) 67, 714
Hpy188I TCNGA 8 cut(s) 142, 198, 372, 403, 506, 703, 846, 928
Hpy188III TCNNGA 3 cut(s) 52, 166, 994
Hpy8I GTNNAC 2 cut(s) 67, 714
Hpy99I CGWCG 3 cut(s) 130, 211, 832
HpyAV CCTTC 4 cut(s) 358, 460, 799, 803
HpyCH4III ACNGT 8 cut(s) 237, 274, 418, 430, 579, 694, 746, 919
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 5 cut(s) 482, 612, 726, 952, 967
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 34, 43, 120
HpyF3I CTNAG 5 cut(s) 197, 213, 400, 903, 909
HpySE526I ACGT 1 cut(s) 608
Hsp92II CATG 8 cut(s) 55, 122, 296, 411, 677, 755, 952, 967
HspAI GCGC 1 cut(s) 645
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Ksp22I TGATCA 4 cut(s) 229, 523, 748, 1009
KspI CCGCGG 1 cut(s) 115
Kzo9I GATC 6 cut(s) 162, 229, 367, 523, 748, 1009
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 4 cut(s) 88, 148, 283, 682
MaeI CTAG 2 cut(s) 62, 768
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 1 cut(s) 314
MalI GATC 6 cut(s) 164, 231, 369, 525, 750, 1011
MboI GATC 6 cut(s) 162, 229, 367, 523, 748, 1009
MboII GAAGA 6 cut(s) 341, 361, 402, 446, 814, 821
MhlI GDGCHC 2 cut(s) 628, 816
MlsI TGGCCA 1 cut(s) 462
MluNI TGGCCA 1 cut(s) 462
MlyI GAGTC 4 cut(s) 193, 212, 413, 709
MmeI TCCRAC 1 cut(s) 577
Mox20I TGGCCA 1 cut(s) 462
MroNI GCCGGC 1 cut(s) 28
MroXI GAANNNNTTC 2 cut(s) 63, 173
MscI TGGCCA 1 cut(s) 462
MseI TTAA 2 cut(s) 276, 858
MslI CAYNNNNRTG 2 cut(s) 312, 744
Msp20I TGGCCA 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 9 cut(s) 29, 73, 243, 319, 336, 356, 708, 797, 881
MspR9I CCNGG 3 cut(s) 357, 709, 882
MvnI CGCG 2 cut(s) 114, 136
MwoI GCNNNNNNNGC 4 cut(s) 29, 34, 43, 120
NaeI GCCGGC 1 cut(s) 30
NciI CCSGG 3 cut(s) 357, 709, 882
NcoI CCATGG 1 cut(s) 118
NdeII GATC 6 cut(s) 162, 229, 367, 523, 748, 1009
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 8 cut(s) 55, 122, 296, 411, 677, 755, 952, 967
NlaIV GGNNCC 4 cut(s) 626, 627, 887, 899
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 2 cut(s) 952, 967
NspV TTCGAA 1 cut(s) 944
PaeR7I CTCGAG 1 cut(s) 684
PagI TCATGA 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 804
PcsI WCGNNNNNNNCGW 1 cut(s) 833
PdiI GCCGGC 1 cut(s) 30
PdmI GAANNNNTTC 2 cut(s) 63, 173
PfeI GAWTC 4 cut(s) 332, 668, 704, 784
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 4 cut(s) 192, 211, 412, 709
PmaCI CACGTG 1 cut(s) 609
PmlI CACGTG 1 cut(s) 609
PpsI GAGTC 4 cut(s) 192, 211, 412, 709
Ppu21I YACGTR 1 cut(s) 609
PspCI CACGTG 1 cut(s) 609
PspEI GGTNACC 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 33
PspN4I GGNNCC 4 cut(s) 626, 627, 887, 899
PspOMI GGGCCC 1 cut(s) 624
PspPI GGNCC 3 cut(s) 31, 624, 625
PspXI VCTCGAGB 1 cut(s) 684
RsaI GTAC 4 cut(s) 239, 247, 511, 581
RsaNI GTAC 4 cut(s) 238, 246, 510, 580
RseI CAYNNNNRTG 2 cut(s) 312, 744
SacII CCGCGG 1 cut(s) 115
SalI GTCGAC 1 cut(s) 712
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 2 cut(s) 276, 858
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 6 cut(s) 162, 229, 367, 523, 748, 1009
Sau96I GGNCC 3 cut(s) 31, 624, 625
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 4 cut(s) 193, 212, 413, 709
ScrFI CCNGG 3 cut(s) 357, 709, 882
SduI GDGCHC 2 cut(s) 628, 816
Sfr274I CTCGAG 1 cut(s) 684
Sfr303I CCGCGG 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 944
SgrBI CCGCGG 1 cut(s) 115
SlaI CTCGAG 1 cut(s) 684
SmiMI CAYNNNNRTG 2 cut(s) 312, 744
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
SpeI ACTAGT 1 cut(s) 61
SsiI CCGC 4 cut(s) 112, 114, 281, 312
SspMI CTAG 2 cut(s) 62, 768
StyD4I CCNGG 3 cut(s) 355, 707, 880
StyI CCWWGG 3 cut(s) 118, 491, 816
TaaI ACNGT 8 cut(s) 237, 274, 418, 430, 579, 694, 746, 919
TaiI ACGT 1 cut(s) 611
TaqI TCGA 7 cut(s) 125, 685, 713, 779, 836, 944, 993
TatI WGTACW 3 cut(s) 237, 509, 579
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 4 cut(s) 332, 668, 704, 784
Tru1I TTAA 2 cut(s) 276, 858
Tru9I TTAA 2 cut(s) 276, 858
TscAI CASTG 2 cut(s) 30, 184
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 68, 945
TspGWI ACGGA 1 cut(s) 863
TspRI CASTG 2 cut(s) 30, 184
XceI RCATGY 2 cut(s) 952, 967
XhoI CTCGAG 1 cut(s) 684
XmiI GTMKAC 1 cut(s) 713
XmnI GAANNNNTTC 2 cut(s) 63, 173
XspI CTAG 2 cut(s) 62, 768
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.