AT2G41180

Sigma factor binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005038
Physical Location & Seq
Forward (+)
17165191 .. 17166110
920 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41180.1

Sequence Viewer

Length: 426 bp
ATGGATCAGTCATCATCAACGTTGCTCATAAACCAGAGAAAGTCATCATCGTCTCCGACTAGGATCCCACCTAAGCAGAAGAGGAAGTCAACGACTACGCACAAACCCATCAAAGTCCGTTACATATCAAATCCGATGAGAGTCGAGACTTGTCCTTCTAAGTTCAGAGAGCTTGTTCAAGAACTCACCGGTCAAGACGCCGCTGATCTACCACCGTCGCCCACCACTTTTACCGCCGTAGATCTCCACCGTCCGTGTGAGTCGGAGATGAACTTAGAGCCGTTGGATGGAGAGGTCCGTGGAGAGTATTATTCACCGTTGGATGAGGAAGTGTTTAATGCTCCTCAGATGTCGGCAGGTCTTTCTGGTTTTTTCTCGTCTGGATTTTACAATGTTAACGCTTTAGGAAGCATTGGTTCTCTCTGA

Protein Analysis

141

Amino Acids

15.57

Weight (kDa)

6.11

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 42 - 68 3.3e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 347
AciI CCGC 2 cut(s) 201, 234
AclI AACGTT 1 cut(s) 20
AclWI GGATC 3 cut(s) 12, 58, 71
AcyI GRCGYC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 287
AgeI ACCGGT 1 cut(s) 188
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 2 cut(s) 57, 140
AlwI GGATC 3 cut(s) 12, 58, 71
AsiGI ACCGGT 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 178, 306
AvaII GGWCC 1 cut(s) 295
BamHI GGATCC 1 cut(s) 63
BccI CCATC 2 cut(s) 116, 281
BceAI ACGGC 2 cut(s) 221, 265
BcoDI GTCTC 2 cut(s) 57, 140
BfaI CTAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 347
BglII AGATCT 1 cut(s) 241
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 298
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse118I RCCGGY 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 292, 328
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 333
BshTI ACCGGT 1 cut(s) 188
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 2 cut(s) 57, 140
BsmBI CGTCTC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 4, 63, 205, 241
BspACI CCGC 2 cut(s) 201, 234
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 347
BspPI GGATC 3 cut(s) 12, 58, 71
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 4 cut(s) 4, 63, 205, 241
BssNI GRCGYC 1 cut(s) 198
Bst4CI ACNGT 3 cut(s) 216, 251, 318
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 198
BstDEI CTNAG 4 cut(s) 72, 159, 274, 345
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 2 cut(s) 292, 328
BstKTI GATC 4 cut(s) 7, 66, 208, 244
BstMAI GTCTC 2 cut(s) 57, 140
BstMBI GATC 4 cut(s) 4, 63, 205, 241
BstX2I RGATCY 2 cut(s) 63, 241
BstYI RGATCY 2 cut(s) 63, 241
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 2 cut(s) 292, 328
BveI ACCTGC 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 1 cut(s) 206
CspAI ACCGGT 1 cut(s) 188
CviJI RGCY 2 cut(s) 172, 280
CviKI_1 RGCY 2 cut(s) 172, 280
DdeI CTNAG 4 cut(s) 72, 159, 274, 345
DpnI GATC 4 cut(s) 6, 65, 207, 243
DpnII GATC 4 cut(s) 4, 63, 205, 241
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 57
FaiI YATR 2 cut(s) 29, 125
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 2 cut(s) 299, 335
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 201
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 198
HincII GTYRAC 2 cut(s) 90, 397
HindII GTYRAC 2 cut(s) 90, 397
HinfI GANTC 2 cut(s) 141, 260
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 1 cut(s) 189
HphI GGTGA 2 cut(s) 178, 306
Hpy166II GTNNAC 2 cut(s) 90, 397
Hpy188I TCNGA 6 cut(s) 57, 135, 167, 265, 348, 425
Hpy188III TCNNGA 4 cut(s) 145, 179, 194, 381
Hpy8I GTNNAC 2 cut(s) 90, 397
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 3 cut(s) 216, 251, 318
HpyCH4IV ACGT 1 cut(s) 20
HpyF3I CTNAG 4 cut(s) 72, 159, 274, 345
HpySE526I ACGT 1 cut(s) 20
Hsp92I GRCGYC 1 cut(s) 198
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 4 cut(s) 4, 63, 205, 241
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 5 cut(s) 47, 202, 342, 351, 366
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 119
MalI GATC 4 cut(s) 6, 65, 207, 243
MboI GATC 4 cut(s) 4, 63, 205, 241
MboII GAAGA 1 cut(s) 91
MflI RGATCY 2 cut(s) 63, 241
MlyI GAGTC 2 cut(s) 150, 269
MmeI TCCRAC 4 cut(s) 80, 243, 264, 300
MnlI CCTC 4 cut(s) 75, 286, 319, 354
MseI TTAA 2 cut(s) 336, 396
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 189
NdeII GATC 4 cut(s) 4, 63, 205, 241
NlaIV GGNNCC 1 cut(s) 65
PinAI ACCGGT 1 cut(s) 188
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 2 cut(s) 149, 268
PpsI GAGTC 2 cut(s) 149, 268
Psp1406I AACGTT 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 295
PsuI RGATCY 2 cut(s) 63, 241
SaqAI TTAA 2 cut(s) 336, 396
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 4 cut(s) 4, 63, 205, 241
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 2 cut(s) 150, 269
SetI ASST 5 cut(s) 23, 73, 174, 297, 361
SinI GGWCC 1 cut(s) 295
SsiI CCGC 2 cut(s) 201, 234
SspMI CTAG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 216, 251, 318
TaiI ACGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 144
TauI GCSGC 1 cut(s) 203
Tru1I TTAA 2 cut(s) 336, 396
Tru9I TTAA 2 cut(s) 336, 396
TspDTI ATGAA 1 cut(s) 284
TspGWI ACGGA 3 cut(s) 107, 243, 287
VpaK11BI GGWCC 1 cut(s) 295
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.