Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

9045709 .. 9047113

Gene Structure 1405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0055300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAACAGGGCAGCTATGTTGGGGACTGATACAGAGGCTCAGGACATGGAGTGGTTCTTCTTCACCAGAAAGTATTACAAGTACAACAAAAGCTCTCGCTCGAATCGGAGCACGAAGAAGGGATACTGGAAAATCACAGGCAAAGAGCGTGGGAACAAGAGGACATTGACTTTTTACCAGGATCGTGTGCCGAAATCGAACAAGACCAGCTGGATCATTCATGAGTACTATCTTCCTGGAAATGGAGTTATTTCGTATCTGAAGCAGGCCCAGGGCGACTTTGTTATCTGTCACTTGATGATTAAATCAGATAAGAAGGATTCTTCGCTCAGTAACGAAGGAGAACCCGGTAGCGCGGGTGTGTCGAATTGTGAAAATCAAGCTGCTGATGAAATGAATCAAGAGGCACAGGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCAGGATGAACGCTGCTCTTCAGCACTGCGGTCACTGGCATCCCAAGAGCTGGAAGCTGTTCTACAAACCAATAGCACTAATGATGATTGTAGTGAGTTGCAGTCACCATTTGTAGATGGTGATTCTTGTCTTCTAGACGGGAATCAAGTTTCAACCTGTGATGAATATGAGACTCTGTATGATGTGTTTCCACAGCTATGTGATCCGCCAGAAGAAAATCTGGATTCACACTTACATCCACCTCAGCAACAAGATTACTGCCCCTCCATACTGCAGTCACCAATATACATAAAGCTGGGAAATGTTCCACATCCGCTTCAGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009814 GO:0009816 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0080090 GO:0098542 GO:0104004 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

257

Amino Acids

29.22

Weight (kDa)

4.96

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 78	1.6e-13	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	496
AccII	CGCG	1 cut(s)	356
AciI	CCGC	4 cut(s)	356, 475, 653, 761
AclWI	GGATC	3 cut(s)	189, 221, 644
AcuI	CTGAAG	3 cut(s)	281, 450, 749
AfaI	GTAC	2 cut(s)	83, 227
AfiI	CCNNNNNNNGG	2 cut(s)	242, 496
AgsI	TTSAA	1 cut(s)	600
AjnI	CCWGG	3 cut(s)	177, 235, 270
AluBI	AGCT	8 cut(s)	14, 93, 210, 383, 496, 503, 643, 742
AluI	AGCT	8 cut(s)	14, 93, 210, 383, 496, 503, 643, 742
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	3 cut(s)	189, 221, 644
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	11, 383, 459
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	4 cut(s)	55, 543, 578, 717
AxyI	CCTNAGG	1 cut(s)	447
BarI	GAAGNNNNNNTAC	4 cut(s)	107, 139, 492, 524
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	113
BbvCI	CCTCAGC	2 cut(s)	441, 690
BbvI	GCAGC	3 cut(s)	23, 370, 446
BccI	CCATC	2 cut(s)	441, 557
BceAI	ACGGC	1 cut(s)	754
BciT130I	CCWGG	3 cut(s)	179, 237, 272
BciVI	GTATCC	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	611
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	719
BfuI	GTATCC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	12, 384, 460
BlsI	GCNGC	3 cut(s)	13, 385, 461
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	4 cut(s)	179, 237, 272, 348
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	4 cut(s)	179, 237, 272, 348
BmsI	GCATC	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	569
Bpu10I	CCTNAGC	3 cut(s)	39, 441, 690
BpuMI	CCSGG	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	270, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 496
Bse1I	ACTGG	2 cut(s)	131, 486
Bse21I	CCTNAGG	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	179, 237, 272
BseDI	CCNNGG	2 cut(s)	270, 271
BseGI	GGATG	4 cut(s)	457, 485, 682, 757
BseLI	CCNNNNNNNGG	2 cut(s)	242, 496
BseMII	CTCAG	5 cut(s)	53, 343, 455, 461, 704
BseNI	ACTGG	2 cut(s)	131, 486
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	23, 370, 446
BseYI	CCCAGC	1 cut(s)	742
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	242, 496
BsmAI	GTCTC	1 cut(s)	611
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	181, 213, 649
BspACI	CCGC	4 cut(s)	356, 475, 653, 761
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	5 cut(s)	52, 342, 454, 460, 703
BspFNI	CGCG	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	723
BspPI	GGATC	3 cut(s)	189, 221, 644
BspQI	GCTCTTC	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	131, 486
BssECI	CCNNGG	2 cut(s)	270, 271
BssMI	GATC	3 cut(s)	181, 213, 649
Bst2UI	CCWGG	3 cut(s)	179, 237, 272
Bst6I	CTCTTC	2 cut(s)	409, 469
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	5 cut(s)	39, 329, 441, 447, 690
BstF5I	GGATG	4 cut(s)	457, 485, 682, 757
BstFNI	CGCG	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	3 cut(s)	184, 216, 652
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	3 cut(s)	181, 213, 649
BstNI	CCWGG	3 cut(s)	179, 237, 272
BstSCI	CCNGG	4 cut(s)	177, 235, 270, 346
BstSFI	CTRYAG	1 cut(s)	719
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	23, 370, 446
BstV2I	GAAGAC	1 cut(s)	569
Bsu36I	CCTNAGG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	4 cut(s)	457, 485, 682, 757
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	2 cut(s)	470, 479
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	82, 226
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	2 cut(s)	46, 221
CviQI	GTAC	2 cut(s)	82, 226
DdeI	CTNAG	5 cut(s)	39, 329, 441, 447, 690
DpnI	GATC	3 cut(s)	183, 215, 651
DpnII	GATC	3 cut(s)	181, 213, 649
Eam1104I	CTCTTC	2 cut(s)	409, 469
EarI	CTCTTC	2 cut(s)	409, 469
EciI	GGCGGA	1 cut(s)	642
Eco57I	CTGAAG	3 cut(s)	281, 450, 749
Eco81I	CCTNAGG	1 cut(s)	447
EcoRII	CCWGG	3 cut(s)	177, 235, 270
FaeI	CATG	2 cut(s)	49, 224
FaiI	YATR	9 cut(s)	17, 47, 222, 615, 627, 646, 716, 733, 737
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	2 cut(s)	45, 220
FauI	CCCGC	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	12, 384, 460
FokI	GGATG	4 cut(s)	464, 472, 669, 744
Fsp4HI	GCNGC	3 cut(s)	12, 384, 460
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	3 cut(s)	12, 384, 460
GsaI	CCCAGC	1 cut(s)	746
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	1 cut(s)	348
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	49, 224
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HinfI	GANTC	7 cut(s)	103, 320, 397, 569, 589, 619, 671
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	4 cut(s)	55, 543, 578, 717
Hpy188I	TCNGA	3 cut(s)	108, 261, 310
Hpy188III	TCNNGA	6 cut(s)	41, 221, 401, 449, 581, 668
HpyAV	CCTTC	3 cut(s)	112, 310, 332
HpyCH4V	TGCA	2 cut(s)	547, 721
HpyF3I	CTNAG	5 cut(s)	39, 329, 441, 447, 690
Hsp92II	CATG	2 cut(s)	49, 224
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	181, 213, 649
LguI	GCTCTTC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	3 cut(s)	23, 370, 446
LweI	GCATC	1 cut(s)	494
MaeI	CTAG	1 cut(s)	581
MaeIII	GTNAC	5 cut(s)	290, 332, 477, 549, 723
MalI	GATC	3 cut(s)	183, 215, 651
MboI	GATC	3 cut(s)	181, 213, 649
MboII	GAAGA	9 cut(s)	49, 52, 127, 224, 315, 426, 456, 569, 671
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	613
MnlI	CCTC	8 cut(s)	28, 153, 397, 412, 450, 456, 699, 721
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	643
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	4 cut(s)	179, 237, 272, 348
MvaI	CCWGG	3 cut(s)	179, 237, 272
MvnI	CGCG	1 cut(s)	356
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	3 cut(s)	181, 213, 649
NlaIII	CATG	2 cut(s)	49, 224
NmuCI	GTSAC	4 cut(s)	290, 477, 549, 723
PagI	TCATGA	1 cut(s)	220
PasI	CCCWGGG	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	6 cut(s)	103, 320, 397, 569, 589, 671
PflMI	CCANNNNNTGG	1 cut(s)	496
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	13, 385, 461
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
Psp6I	CCWGG	3 cut(s)	177, 235, 270
PspFI	CCCAGC	1 cut(s)	742
PspGI	CCWGG	3 cut(s)	177, 235, 270
PspPI	GGNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	723
PvuII	CAGCTG	1 cut(s)	210
RsaI	GTAC	2 cut(s)	83, 227
RsaNI	GTAC	2 cut(s)	82, 226
RseI	CAYNNNNRTG	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	12, 384, 460
Sau3AI	GATC	3 cut(s)	181, 213, 649
Sau96I	GGNCC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	613
ScrFI	CCNGG	4 cut(s)	179, 237, 272, 348
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	1 cut(s)	494
SfcI	CTRYAG	1 cut(s)	719
SmiMI	CAYNNNNRTG	1 cut(s)	643
Sse9I	AATT	1 cut(s)	367
SsiI	CCGC	4 cut(s)	356, 475, 653, 761
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	4 cut(s)	177, 235, 270, 346
TaqI	TCGA	3 cut(s)	101, 197, 365
TasI	AATT	1 cut(s)	367
TatI	WGTACW	2 cut(s)	81, 225
TfiI	GAWTC	6 cut(s)	103, 320, 397, 569, 589, 671
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	477, 486
TseFI	GTSAC	4 cut(s)	290, 477, 549, 723
TseI	GCWGC	3 cut(s)	11, 383, 459
Tsp45I	GTSAC	4 cut(s)	290, 477, 549, 723
TspDTI	ATGAA	6 cut(s)	17, 209, 405, 410, 468, 624
TspRI	CASTG	2 cut(s)	477, 486
Van91I	CCANNNNNTGG	1 cut(s)	496
XbaI	TCTAGA	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	1 cut(s)	581
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.