Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

4528127 .. 4529124

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGATGTGCTTTGTGAGAACCACATGAAGAGCCCCCCCAAGCAGAGCAAGAGAAGAAAATCAAAGGGTGTGAAGGTTGTGTACATATCAAGCCCTATGAAGGTGAAGACAAGTGCCTCTAAGTTTAGGGCTCTTGTCCAGGAGCTTACTGGTAGAGACTCTGATGCTGAGCGTTTCATGGAGACCAAAGGTGCTCATTATCAAAATGTTCATGAGCTTACTCATGAGCAACAATTGAAGGGTGTGGATCATGATCATGATCATGATCATGGGTTGTTGCCTCAGCTTCCTTTCTCGAATTCGTTTTTTGAGTTTCCGAATTGCTCCGATGCTTTGTTCGAACCGTTTTCTGGGCATTTCGAGTTGGATGTGCTCAGAAACGTTGATCAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009814 GO:0009816 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0080090 GO:0098542 GO:0104004 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

132

Amino Acids

15.05

Weight (kDa)

6.49

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	381
AclWI	GGATC	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	298, 390
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	100, 350
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	3 cut(s)	145, 217, 286
AluI	AGCT	3 cut(s)	145, 217, 286
Alw21I	GWGCWC	2 cut(s)	196, 375
Alw26I	GTCTC	2 cut(s)	150, 176
AlwI	GGATC	1 cut(s)	255
ApoI	RAATTY	2 cut(s)	298, 390
AsuHPI	GGTGA	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	339
BanII	GRGCYC	2 cut(s)	35, 133
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	2 cut(s)	196, 375
BbvCI	CCTCAGC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	4 cut(s)	253, 259, 265, 385
BcoDI	GTCTC	2 cut(s)	150, 176
BlpI	GCTNAGC	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	154, 319
BpiI	GAAGAC	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	339
BsaBI	GATNNNNATC	3 cut(s)	252, 258, 264
BsaI	GGTCTC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 350
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	3 cut(s)	252, 258, 264
BseBI	CCWGG	1 cut(s)	140
BseGI	GGATG	2 cut(s)	10, 373
BseJI	GATNNNNATC	3 cut(s)	252, 258, 264
BseLI	CCNNNNNNNGG	2 cut(s)	100, 350
BseMII	CTCAG	3 cut(s)	159, 296, 388
BseNI	ACTGG	1 cut(s)	154
BsiHKAI	GWGCWC	2 cut(s)	196, 375
BslI	CCNNNNNNNGG	2 cut(s)	100, 350
BsmAI	GTCTC	2 cut(s)	150, 176
Bso31I	GGTCTC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	339
Bsp1286I	GDGCHC	4 cut(s)	35, 133, 196, 375
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	5 cut(s)	247, 253, 259, 265, 385
Bsp1720I	GCTNAGC	1 cut(s)	168
BspCNI	CTCAG	3 cut(s)	160, 295, 387
BspHI	TCATGA	5 cut(s)	211, 223, 250, 256, 262
BspPI	GGATC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	23
BspT104I	TTCGAA	1 cut(s)	339
BspTNI	GGTCTC	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	154
BssMI	GATC	5 cut(s)	247, 253, 259, 265, 385
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	339
BstDEI	CTNAG	4 cut(s)	120, 168, 282, 374
BstF5I	GGATG	2 cut(s)	10, 373
BstKTI	GATC	5 cut(s)	250, 256, 262, 268, 388
BstMAI	GTCTC	2 cut(s)	150, 176
BstMBI	GATC	5 cut(s)	247, 253, 259, 265, 385
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	10, 373
CciI	TCATGA	5 cut(s)	211, 223, 250, 256, 262
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	8 cut(s)	25, 178, 212, 224, 251, 257, 263, 269
CviJI	RGCY	6 cut(s)	33, 93, 131, 145, 217, 286
CviKI_1	RGCY	6 cut(s)	33, 93, 131, 145, 217, 286
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	4 cut(s)	120, 168, 282, 374
DpnI	GATC	5 cut(s)	249, 255, 261, 267, 387
DpnII	GATC	5 cut(s)	247, 253, 259, 265, 385
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco24I	GRGCYC	2 cut(s)	35, 133
Eco31I	GGTCTC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	35, 133
FaeI	CATG	8 cut(s)	28, 181, 215, 227, 254, 260, 266, 272
FatI	CATG	8 cut(s)	24, 177, 211, 223, 250, 256, 262, 268
FbaI	TGATCA	4 cut(s)	253, 259, 265, 385
FokI	GGATG	2 cut(s)	17, 380
FriOI	GRGCYC	2 cut(s)	35, 133
Hin1II	CATG	8 cut(s)	28, 181, 215, 227, 254, 260, 266, 272
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	4 cut(s)	163, 318, 328, 377
Hpy188III	TCNNGA	6 cut(s)	212, 224, 251, 257, 263, 295
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	3 cut(s)	67, 94, 232
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	1 cut(s)	381
HpyF3I	CTNAG	4 cut(s)	120, 168, 282, 374
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	8 cut(s)	28, 181, 215, 227, 254, 260, 266, 272
Ksp22I	TGATCA	4 cut(s)	253, 259, 265, 385
Kzo9I	GATC	5 cut(s)	247, 253, 259, 265, 385
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	142, 329
LpnPI	CCDG	4 cut(s)	125, 135, 152, 336
LweI	GCATC	2 cut(s)	154, 319
MaeII	ACGT	1 cut(s)	381
MalI	GATC	5 cut(s)	249, 255, 261, 267, 387
MboI	GATC	5 cut(s)	247, 253, 259, 265, 385
MboII	GAAGA	3 cut(s)	40, 66, 118
MfeI	CAATTG	1 cut(s)	233
MhlI	GDGCHC	4 cut(s)	35, 133, 196, 375
MluCI	AATT	4 cut(s)	233, 298, 319, 390
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	2 cut(s)	127, 291
MslI	CAYNNNNRTG	3 cut(s)	255, 261, 267
MspR9I	CCNGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	140
NdeII	GATC	5 cut(s)	247, 253, 259, 265, 385
NlaIII	CATG	8 cut(s)	28, 181, 215, 227, 254, 260, 266, 272
NspV	TTCGAA	1 cut(s)	339
PagI	TCATGA	5 cut(s)	211, 223, 250, 256, 262
PciSI	GCTCTTC	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	138
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp1406I	AACGTT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	3 cut(s)	255, 261, 267
SapI	GCTCTTC	1 cut(s)	23
Sau3AI	GATC	5 cut(s)	247, 253, 259, 265, 385
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	4 cut(s)	35, 133, 196, 375
SetI	ASST	7 cut(s)	78, 105, 147, 193, 219, 288, 384
SfaNI	GCATC	2 cut(s)	154, 319
SfuI	TTCGAA	1 cut(s)	339
SmiMI	CAYNNNNRTG	3 cut(s)	255, 261, 267
Sse9I	AATT	4 cut(s)	233, 298, 319, 390
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	3 cut(s)	296, 339, 360
TasI	AATT	4 cut(s)	233, 298, 319, 390
TatI	WGTACW	1 cut(s)	81
TspDTI	ATGAA	4 cut(s)	41, 113, 166, 200
XapI	RAATTY	2 cut(s)	298, 390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.