Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

13931554 .. 13933042

Gene Structure 1489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG075800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCTCAGTCTCTGCTCAAAGATTCACTCTTTCCCTAAACGTTTGTTCGTGCACTTTTTTGCGTCCGCCGCCCGTAATAAGTGTTTGATAAATTGTCTCAAAATGGATATGTTGGGGGTGAGCAACCGGAGCCCGAAGCAGAGCAAGAGAAGCAAATCGTCAAAGGGAGTGAAGGTGGTGTACATATCGAGCCCCATGAAGGTTCAAACCAGTGCCTCTAAGTTCAGGGCGCTTGTGCAGGAGCTCACCGGCCGAGACTCCGACGCCGAGCGGTTCATGGAGACCAACGGTGGTGGTGGTCACCGTCATCAGAATATTCCTGAGTTTTCTCATGAGCAGCAACTCAAGGCCGCTGATGGTGACCATCATGTATTCCCTCACCATCAGATTCCTTTCTCGAATTCGATTTATGAGTTTCCGAATTGCTCCGACTCTTTGTTTGAACCGTTTACTGGGCATTTTGAGCTCGATGTGCTCAGAAGCTTTGATCAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009814 GO:0009816 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0080090 GO:0098542 GO:0104004 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

165

Amino Acids

18.7

Weight (kDa)

9.14

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	62 - 88	1.3e-11	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	271
AciI	CCGC	4 cut(s)	66, 69, 271, 351
AclI	AACGTT	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	199, 452
AgsI	TTSAA	2 cut(s)	206, 443
AluBI	AGCT	3 cut(s)	244, 466, 483
AluI	AGCT	3 cut(s)	244, 466, 483
Alw21I	GWGCWC	4 cut(s)	54, 246, 468, 477
Alw26I	GTCTC	4 cut(s)	14, 101, 249, 275
Alw44I	GTGCAC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	12
AoxI	GGCC	2 cut(s)	250, 348
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	400
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AspLEI	GCGC	1 cut(s)	232
AsuHPI	GGTGA	5 cut(s)	130, 238, 293, 371, 371
BaeGI	GKGCMC	1 cut(s)	54
BanII	GRGCYC	4 cut(s)	134, 194, 246, 468
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
Bbv12I	GWGCWC	4 cut(s)	54, 246, 468, 477
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	3 cut(s)	350, 372, 390
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	4 cut(s)	14, 101, 249, 275
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	3 cut(s)	69, 338, 351
BlsI	GCNGC	3 cut(s)	70, 339, 352
BmiI	GGNNCC	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 452
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	210, 457
BseLI	CCNNNNNNNGG	2 cut(s)	199, 452
BseMII	CTCAG	3 cut(s)	19, 312, 490
BseNI	ACTGG	2 cut(s)	210, 457
BseSI	GKGCMC	1 cut(s)	54
BseX3I	CGGCCG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	257
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	252, 350
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	4 cut(s)	54, 246, 468, 477
BsiSI	CCGG	2 cut(s)	127, 249
BslI	CCNNNNNNNGG	2 cut(s)	199, 452
BsmAI	GTCTC	4 cut(s)	14, 101, 249, 275
BsnI	GGCC	2 cut(s)	252, 350
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	6 cut(s)	54, 134, 194, 246, 468, 477
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	4 cut(s)	66, 69, 271, 351
BspANI	GGCC	2 cut(s)	252, 350
BspCNI	CTCAG	3 cut(s)	18, 313, 489
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	210, 457
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	1 cut(s)	487
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	290, 305, 447
BstACI	GRCGYC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	180
BstDEI	CTNAG	4 cut(s)	5, 219, 321, 476
BstEII	GGTNACC	2 cut(s)	299, 359
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	4 cut(s)	14, 101, 249, 275
BstMBI	GATC	1 cut(s)	487
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 129, 150, 463, 472
BstPI	GGTNACC	2 cut(s)	299, 359
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	349
BstZI	CGGCCG	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	252, 350
BtsIMutI	CAGTG	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	12
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	248
CseI	GACGC	2 cut(s)	51, 272
Csp6I	GTAC	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	4 cut(s)	196, 277, 332, 368
CviJI	RGCY	7 cut(s)	132, 192, 244, 252, 350, 466, 483
CviKI_1	RGCY	7 cut(s)	132, 192, 244, 252, 350, 466, 483
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	4 cut(s)	5, 219, 321, 476
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	250
EagI	CGGCCG	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	2 cut(s)	244, 466
EclXI	CGGCCG	1 cut(s)	250
Eco24I	GRGCYC	4 cut(s)	134, 194, 246, 468
Eco31I	GGTCTC	1 cut(s)	275
Eco52I	CGGCCG	1 cut(s)	250
Eco53kI	GAGCTC	2 cut(s)	244, 466
Eco91I	GGTNACC	2 cut(s)	299, 359
EcoICRI	GAGCTC	2 cut(s)	244, 466
EcoO65I	GGTNACC	2 cut(s)	299, 359
EcoRI	GAATTC	1 cut(s)	400
EcoT38I	GRGCYC	4 cut(s)	134, 194, 246, 468
FaeI	CATG	4 cut(s)	199, 280, 335, 371
FaiI	YATR	8 cut(s)	110, 185, 197, 278, 333, 369, 411, 496
FatI	CATG	4 cut(s)	195, 276, 331, 367
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	69, 338, 351
FriOI	GRGCYC	4 cut(s)	134, 194, 246, 468
Fsp4HI	GCNGC	3 cut(s)	69, 338, 351
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	3 cut(s)	69, 338, 351
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	252, 350
HapII	CCGG	2 cut(s)	127, 249
HgaI	GACGC	2 cut(s)	51, 272
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	4 cut(s)	199, 280, 335, 371
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	4 cut(s)	22, 257, 388, 431
HpaII	CCGG	2 cut(s)	127, 249
HphI	GGTGA	5 cut(s)	130, 238, 293, 371, 371
Hpy166II	GTNNAC	3 cut(s)	52, 181, 450
Hpy188I	TCNGA	6 cut(s)	262, 312, 387, 420, 430, 479
Hpy188III	TCNNGA	3 cut(s)	320, 332, 397
Hpy8I	GTNNAC	3 cut(s)	52, 181, 450
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	166, 193
HpyCH4III	ACNGT	3 cut(s)	290, 305, 447
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	52, 238
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 129, 150, 463, 472
HpyF3I	CTNAG	4 cut(s)	5, 219, 321, 476
HpySE526I	ACGT	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	4 cut(s)	199, 280, 335, 371
HspAI	GCGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	3 cut(s)	129, 241, 431
LpnPI	CCDG	7 cut(s)	140, 211, 223, 224, 262, 333, 438
Lsp1109I	GCAGC	1 cut(s)	349
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	2 cut(s)	299, 359
MalI	GATC	1 cut(s)	489
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	1 cut(s)	487
MhlI	GDGCHC	6 cut(s)	54, 134, 194, 246, 468, 477
MluCI	AATT	3 cut(s)	91, 400, 421
MlyI	GAGTC	2 cut(s)	251, 425
MmeI	TCCRAC	2 cut(s)	285, 453
MnlI	CCTC	2 cut(s)	226, 387
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	2 cut(s)	127, 249
MwoI	GCNNNNNNNGC	5 cut(s)	68, 129, 150, 463, 472
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	4 cut(s)	199, 280, 335, 371
NlaIV	GGNNCC	1 cut(s)	131
NmeAIII	GCCGAG	2 cut(s)	278, 292
NmuCI	GTSAC	2 cut(s)	299, 359
PagI	TCATGA	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	22, 388
PkrI	GCNGC	3 cut(s)	70, 339, 352
PleI	GAGTC	2 cut(s)	251, 425
PpsI	GAGTC	2 cut(s)	251, 425
Psp124BI	GAGCTC	2 cut(s)	246, 468
Psp1406I	AACGTT	1 cut(s)	40
PspEI	GGTNACC	2 cut(s)	299, 359
PspN4I	GGNNCC	1 cut(s)	131
PstNI	CAGNNNCTG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	2 cut(s)	246, 468
SatI	GCNGC	3 cut(s)	69, 338, 351
Sau3AI	GATC	1 cut(s)	487
SchI	GAGTC	2 cut(s)	251, 425
SduI	GDGCHC	6 cut(s)	54, 134, 194, 246, 468, 477
SetI	ASST	6 cut(s)	43, 177, 204, 246, 468, 485
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	91, 400, 421
SsiI	CCGC	4 cut(s)	66, 69, 271, 351
SspI	AATATT	1 cut(s)	316
SstI	GAGCTC	2 cut(s)	246, 468
TaaI	ACNGT	3 cut(s)	290, 305, 447
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	4 cut(s)	188, 398, 404, 468
TasI	AATT	3 cut(s)	91, 400, 421
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	2 cut(s)	71, 353
TfiI	GAWTC	2 cut(s)	22, 388
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	299, 359
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	2 cut(s)	299, 359
TspDTI	ATGAA	2 cut(s)	212, 265
TspRI	CASTG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.