Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Forward (+)

2817870 .. 2818259

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGACGTGCCCGGTGTGAACGTGAAGAGCCCGAAGCAAAGCAAGCGAAGCAGATCAAAGGGTGGTGTCAAAGTTGTCTACATATCAAGCCCTATGAAAGTTAAGACCAGTGCCTCTGAGTTTAGGGCACTTGTCCAGGAGCTCACCGGAAGACACTCCGATGCGGAGCGTTTTATGGAAACAAATAACAGTGGCCAGCATCATCAACAAAATGTTCATAAGGATTCTCATGAGCAGCAGTTGAAGGTTGTGGATGATTACGTGCTGCTGCCTCAGCTTCCTTTCCCGAATTCCTTTTACGAGTTTCCGAATTGGGCTTCGGATTCTTTGTTTGAACCATTTTCTGGGCAGTTTGAGCTGGAAGTGCTCAGAAGCTATGATCAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009814 GO:0009816 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0080090 GO:0098542 GO:0104004 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

6.51

Isoelectric Point (pI)

60.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	28 - 54	4.1e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	289, 384
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	244, 335
AjiI	CACGTC	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	142, 277, 358, 375
AluI	AGCT	4 cut(s)	142, 277, 358, 375
Alw21I	GWGCWC	2 cut(s)	144, 369
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	3 cut(s)	235, 265, 268
ApoI	RAATTY	2 cut(s)	289, 384
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	136
BaeGI	GKGCMC	2 cut(s)	12, 130
BalI	TGGCCA	1 cut(s)	195
BanII	GRGCYC	2 cut(s)	32, 144
BbsI	GAAGAC	1 cut(s)	157
Bbv12I	GWGCWC	2 cut(s)	144, 369
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	247, 252, 255
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	12
BisI	GCNGC	3 cut(s)	236, 266, 269
BlsI	GCNGC	3 cut(s)	237, 267, 270
Bme1390I	CCNGG	2 cut(s)	12, 137
BmgBI	CACGTC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	12, 137
BmsI	GCATC	2 cut(s)	151, 208
BpiI	GAAGAC	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	3 cut(s)	108, 287, 382
BseNI	ACTGG	1 cut(s)	108
BseSI	GKGCMC	2 cut(s)	12, 130
BseXI	GCAGC	3 cut(s)	247, 252, 255
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	144, 369
BsiSI	CCGG	2 cut(s)	12, 147
BslI	CCNNNNNNNGG	1 cut(s)	344
BsnI	GGCC	1 cut(s)	195
Bsp1286I	GDGCHC	5 cut(s)	12, 32, 130, 144, 369
Bsp143I	GATC	2 cut(s)	53, 379
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	3 cut(s)	109, 286, 381
BspHI	TCATGA	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	53, 379
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	2 cut(s)	44, 197
BstDEI	CTNAG	3 cut(s)	117, 273, 368
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	56, 382
BstMBI	GATC	2 cut(s)	53, 379
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 48, 274, 355, 364
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	10, 135
BstSLI	GKGCMC	2 cut(s)	12, 130
BstV1I	GCAGC	3 cut(s)	247, 252, 255
BstV2I	GAAGAC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	115, 196
Cac8I	GCNNGC	2 cut(s)	44, 197
CciI	TCATGA	1 cut(s)	229
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	8 cut(s)	30, 90, 142, 195, 277, 317, 358, 375
CviKI_1	RGCY	8 cut(s)	30, 90, 142, 195, 277, 317, 358, 375
DdeI	CTNAG	3 cut(s)	117, 273, 368
DpnI	GATC	2 cut(s)	55, 381
DpnII	GATC	2 cut(s)	53, 379
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	32, 144
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	32, 144
FaeI	CATG	1 cut(s)	233
FaiI	YATR	6 cut(s)	83, 95, 176, 219, 231, 378
FatI	CATG	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	236, 266, 269
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	2 cut(s)	32, 144
Fsp4HI	GCNGC	3 cut(s)	236, 266, 269
GluI	GCNGC	3 cut(s)	236, 266, 269
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	2 cut(s)	12, 147
Hin1II	CATG	1 cut(s)	233
HinfI	GANTC	2 cut(s)	224, 323
HpaII	CCGG	2 cut(s)	12, 147
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	19, 79
Hpy188I	TCNGA	5 cut(s)	118, 160, 309, 322, 371
Hpy188III	TCNNGA	2 cut(s)	230, 286
Hpy8I	GTNNAC	2 cut(s)	19, 79
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	3 cut(s)	6, 21, 261
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 48, 274, 355, 364
HpyF3I	CTNAG	3 cut(s)	117, 273, 368
HpySE526I	ACGT	3 cut(s)	6, 21, 261
Hsp92II	CATG	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	53, 379
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	139, 166
LpnPI	CCDG	8 cut(s)	25, 121, 122, 149, 160, 209, 330, 344
Lsp1109I	GCAGC	3 cut(s)	247, 252, 255
LweI	GCATC	2 cut(s)	151, 208
MaeII	ACGT	3 cut(s)	6, 21, 261
MalI	GATC	2 cut(s)	55, 381
MboI	GATC	2 cut(s)	53, 379
MboII	GAAGA	2 cut(s)	37, 162
MhlI	GDGCHC	5 cut(s)	12, 32, 130, 144, 369
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	3 cut(s)	289, 310, 384
MluNI	TGGCCA	1 cut(s)	195
MnlI	CCTC	2 cut(s)	124, 282
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	102, 388
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	2 cut(s)	12, 147
MspR9I	CCNGG	2 cut(s)	12, 137
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	5 cut(s)	43, 48, 274, 355, 364
NciI	CCSGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	53, 379
NlaIII	CATG	1 cut(s)	233
PagI	TCATGA	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	224, 323
PflMI	CCANNNNNTGG	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	237, 267, 270
Ppu21I	YACGTR	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	102, 388
SatI	GCNGC	3 cut(s)	236, 266, 269
Sau3AI	GATC	2 cut(s)	53, 379
ScrFI	CCNGG	2 cut(s)	12, 137
SduI	GDGCHC	5 cut(s)	12, 32, 130, 144, 369
SetI	ASST	8 cut(s)	9, 24, 144, 249, 264, 279, 360, 377
SfaNI	GCATC	2 cut(s)	151, 208
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	3 cut(s)	289, 310, 384
SsiI	CCGC	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	10, 135
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	3 cut(s)	9, 24, 264
TasI	AATT	3 cut(s)	289, 310, 384
TfiI	GAWTC	2 cut(s)	224, 323
Tru1I	TTAA	2 cut(s)	102, 388
Tru9I	TTAA	2 cut(s)	102, 388
TscAI	CASTG	2 cut(s)	115, 196
TseI	GCWGC	3 cut(s)	235, 265, 268
TspDTI	ATGAA	2 cut(s)	110, 206
TspRI	CASTG	2 cut(s)	115, 196
Van91I	CCANNNNNTGG	1 cut(s)	344
XapI	RAATTY	2 cut(s)	289, 384
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.