Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

3885876 .. 3886274

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATGTGCTAGGGGTGAACAACCGGAGCCCGAAGCAGAGCAAGAGAAGCAGATCTTCAAAAGGGGTGAAGGTGGTGTACATATCGAGCCCCATGAAGGTTCAGACTAGCGCCTCTAAGTTCAGGGCACTTGTGCAGGAGCTCACAGGCCGAGACTCCGATGCCGAGCGGTTCATGGAGACTAACGGTGGTGATGGTCATCACCGTCATCACAAAGTTCCTGAGTTTTCTCATGAGAAGCAACTCAAGGAAGCCGATCGTGACCATCTTGTATTCCCTCACCATCAGATTCCTTTCTCGAATTCGATTTACGAGCTTCCGAATTTCTCCGACTTTTTGTTTGAACCGTTTACTGGGCATTATGAGCTCGATGCGCTGAGAAGTTTTGATCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009814 GO:0009816 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0080090 GO:0098542 GO:0104004 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

133

Amino Acids

15.2

Weight (kDa)

7.15

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	28 - 54	9.1e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	301, 322
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	97, 353
AgsI	TTSAA	2 cut(s)	60, 344
AluBI	AGCT	3 cut(s)	142, 316, 367
AluI	AGCT	3 cut(s)	142, 316, 367
Alw21I	GWGCWC	2 cut(s)	144, 369
Alw26I	GTCTC	2 cut(s)	147, 173
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	301, 322
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspLEI	GCGC	2 cut(s)	113, 376
AsuHPI	GGTGA	5 cut(s)	28, 79, 194, 203, 272
BaeGI	GKGCMC	1 cut(s)	130
BanII	GRGCYC	4 cut(s)	32, 92, 144, 369
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
Bbv12I	GWGCWC	2 cut(s)	144, 369
BccI	CCATC	3 cut(s)	188, 273, 291
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	147, 173
BfaI	CTAG	2 cut(s)	11, 108
BfoI	RGCGCY	1 cut(s)	114
BglII	AGATCT	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	151, 361
BmuI	ACTGGG	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 353
Bse1I	ACTGG	1 cut(s)	358
Bse8I	GATNNNNATC	1 cut(s)	198
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	97, 353
BseMII	CTCAG	2 cut(s)	213, 368
BseNI	ACTGG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	259
BsiHKAI	GWGCWC	2 cut(s)	144, 369
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	97, 353
BsmAI	GTCTC	2 cut(s)	147, 173
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	5 cut(s)	32, 92, 130, 144, 369
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	53, 256, 388
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	214, 369
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	358
BssMI	GATC	3 cut(s)	53, 256, 388
Bst4CI	ACNGT	3 cut(s)	188, 206, 348
BstAUI	TGTACA	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	117, 222, 377
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 376
BstKTI	GATC	3 cut(s)	56, 259, 391
BstMAI	GTCTC	2 cut(s)	147, 173
BstMBI	GATC	3 cut(s)	53, 256, 388
BstMCI	CGRYCG	1 cut(s)	259
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 364, 373
BstSLI	GKGCMC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	10
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	2 cut(s)	113, 376
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	3 cut(s)	94, 175, 233
CviJI	RGCY	7 cut(s)	30, 90, 142, 150, 254, 316, 367
CviKI_1	RGCY	7 cut(s)	30, 90, 142, 150, 254, 316, 367
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	3 cut(s)	117, 222, 377
DpnI	GATC	3 cut(s)	55, 258, 390
DpnII	GATC	3 cut(s)	53, 256, 388
Ecl136II	GAGCTC	2 cut(s)	142, 367
Eco24I	GRGCYC	4 cut(s)	32, 92, 144, 369
Eco53kI	GAGCTC	2 cut(s)	142, 367
EcoICRI	GAGCTC	2 cut(s)	142, 367
EcoRI	GAATTC	1 cut(s)	301
EcoT38I	GRGCYC	4 cut(s)	32, 92, 144, 369
FaeI	CATG	3 cut(s)	97, 178, 236
FaiI	YATR	5 cut(s)	83, 95, 176, 234, 363
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	3 cut(s)	93, 174, 232
FbaI	TGATCA	1 cut(s)	388
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	4 cut(s)	32, 92, 144, 369
FspBI	CTAG	2 cut(s)	11, 108
GlaI	GCGC	2 cut(s)	112, 375
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	2 cut(s)	113, 376
Hin1II	CATG	3 cut(s)	97, 178, 236
Hin6I	GCGC	2 cut(s)	111, 374
HinP1I	GCGC	2 cut(s)	111, 374
HinfI	GANTC	2 cut(s)	155, 289
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	5 cut(s)	28, 79, 194, 203, 272
Hpy166II	GTNNAC	3 cut(s)	19, 79, 351
Hpy188I	TCNGA	5 cut(s)	105, 160, 288, 321, 331
Hpy188III	TCNNGA	4 cut(s)	221, 233, 260, 298
Hpy8I	GTNNAC	3 cut(s)	19, 79, 351
HpyAV	CCTTC	2 cut(s)	64, 91
HpyCH4III	ACNGT	3 cut(s)	188, 206, 348
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 364, 373
HpyF3I	CTNAG	3 cut(s)	117, 222, 377
Hsp92II	CATG	3 cut(s)	97, 178, 236
HspAI	GCGC	2 cut(s)	111, 374
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	53, 256, 388
LmnI	GCTCC	2 cut(s)	27, 139
LpnPI	CCDG	6 cut(s)	38, 109, 122, 132, 234, 339
LweI	GCATC	2 cut(s)	151, 361
MaeI	CTAG	2 cut(s)	11, 108
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	55, 258, 390
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	3 cut(s)	53, 256, 388
MboII	GAAGA	1 cut(s)	48
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	5 cut(s)	32, 92, 130, 144, 369
MluCI	AATT	2 cut(s)	301, 322
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	2 cut(s)	124, 288
MseI	TTAA	1 cut(s)	397
MspI	CCGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	3 cut(s)	48, 364, 373
NdeII	GATC	3 cut(s)	53, 256, 388
NlaIII	CATG	3 cut(s)	97, 178, 236
NlaIV	GGNNCC	1 cut(s)	29
NmeAIII	GCCGAG	2 cut(s)	176, 190
NmuCI	GTSAC	1 cut(s)	260
PagI	TCATGA	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	289
Ple19I	CGATCG	1 cut(s)	259
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp124BI	GAGCTC	2 cut(s)	144, 369
PspN4I	GGNNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	53
PvuI	CGATCG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SacI	GAGCTC	2 cut(s)	144, 369
SaqAI	TTAA	1 cut(s)	397
Sau3AI	GATC	3 cut(s)	53, 256, 388
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	5 cut(s)	32, 92, 130, 144, 369
SetI	ASST	5 cut(s)	75, 102, 144, 318, 369
SfaNI	GCATC	2 cut(s)	151, 361
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	301, 322
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	2 cut(s)	11, 108
SstI	GAGCTC	2 cut(s)	144, 369
TaaI	ACNGT	3 cut(s)	188, 206, 348
TaqI	TCGA	4 cut(s)	86, 299, 305, 369
TasI	AATT	2 cut(s)	301, 322
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	397
Tru9I	TTAA	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	110, 163
XapI	RAATTY	2 cut(s)	301, 322
XspI	CTAG	2 cut(s)	11, 108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.