Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

27185633 .. 27190044

Gene Structure 4412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0258200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2628 bp

ATGGAGTTTGCCAGCAACATTGCAGATAACGTCTTGGATAGGCTAGCTTCACATGCTTCCCAAGAGATCTGCTTGGCATGGAGCGCCCAACTTGAGCTCACCAAGCTCCACAACACCTTATCTATCATCAAACTAGTGCTCGAGGATGCAGAGAAGAAGCAAGTGAGAAATCCCCTAATCACTCATTGGTTGGGAAATCTCAAAGATGTTTGCCATGACGTTGATGATGTTTTGGACGAACTGGACTTCCAAAAGTTGCTGTTGAAAGTGGAGGTCGACAACTGTGGGAAGATCAAAGGAAAGGTACGCCAATTTTTTTCCCAATGGAATCCAGTAGTGTTTAACTTCAAAATGGGACATAAAGTGAAAGAGATTAGAGAAAGACTAGTTGAAATTGATAATGAAAAGAGACAGTTTGCTCTCCTTGAGTTTGCTAAGATAGCTGAAGATCCTCGTGCGCCCCAACAAGTGCACGATGACTGGAGGATGACTACCTCTAAAGTTGAGGCTTCAAATGTTATTGGAAGAGATGATGATAAAAAACACATTATCAAGCATCTCTTGAATGACACTGATTTCTCCAGTGAGGAGAATGTTTCTGTTGTTTCCATAATTGGGTTAGGAGGGTTGGGGAAAACAACACTTGCTAAATTGGTGTACAATGATAGCATGGTAGAAGAAAATTTTGAGACAAAGATGTGGATATGCGTTTCAGACAACTTTGATATTCAAACATTAATTCGAGGTATTACTAATGCTGCAAATGGACCAAAATGTGAGTATGAAAGTTTGGATCTTATGGAAAGAAAGTTGCAAGATATTCTTAGGGGTAAAATTTTTTTATTGGTGTTGGATGATATCTGGGATACAAAGTCTATTGGAGTAACAATTGAAAAATGGACTTATTTAAAAACTTTGTTAAATGTGGGAGCTAATGGAAGCAAAATCATCATAACAACACGAAATAAATCAGTTGCTTTACTTGTGAGTCCCTTATACATGCATTCTTTAGAAGGTCTTTCCCACAAAGATTGCATGTCCTTGTTCATCCAAAGGGCATTTAAAAGAGGAGGGGAGCAGTGCTATCAACATTTGATAGAAATTGGAGAGGATATTGTGAAGAAGTGTGGAGGAGTTCCTTTAGCAGTAGCTACTGTAGGGAGCATGCTTTATTTGAATACAGAGCGACACCACTGGTTGAGTGTCAGAGATGATGACATGTGGAGTATAGGGAATGACAATATTTTACCTGCACTCAAATTGAGCTATGATGCATTGCCACAACACTTGAAACCATGTTTTGCATTTTGTTCACTTTTCCCAAAGGATTTTGAATTCCGCAGTGGCTTCTTGGCTTCACTGTGGCTAGCACAAGGCTACCTCAAAACATGCAACAAAAATGAAGATTTTGAACAGATAGGTATAGACTATATAAGGCAATTTTGCTCTAGATCTTTGTTTCAAGTCGAGATGGATCTCAAAACATTCATGATTTTTAAAATACATGATCTAGTTCATGATTTGGCAATTTCAGTGGCACAAATAGAGTACTCAACGGTCAATTTTCGTCCCTCTAGTGCTTTGGAAATGGTTCGACATGTGTCAATATCCAAAAAAGACTTGCTTGGAGAAGAGGCACAAGTTCCCGATTTCATGCTTAAGTCAAAGAAATTGCGAACCATTCTAATTCCTGAAGATACCCAGATGAATCAATGTTTTGTGAAGACATACATCTCGAGATTCAAATATATGCGGGTGCTAGATCTCAGTAGGTTGCCTCTTGAAGAGCTACCAAGTTCCATTGGTAGTTTGTTTCATTTGAGGTATCTCAACTTATGTTATAATAATAAGATAAAAAGGCTTCCCAATTCCATCAGTAAGCTGCTGAATTTGGAGACCTTGTACCTTGCGGGTTGTAACGCACTTGAGGAGATACCCAAAGACATAGGGAACCTGATCAACCTCCGAAGCATGCTGATAACTACACAGCAGACGTATTTGCCGAAAGGAATTAGACGTCTCACCTTACTTCAATCTTTATATTTTGATGGATGTGTCAATCTTAAATCTTTGGGCGAAGAGATCCAATTCCTCAACAACCTTCGTAAATTGTGGATTAAAGGTTGTAATAATTTGGAATCCTTGCCACCAAATATGAAACACATGACCGCTTTAGATACTTTGGCTGTCAATGATTGCCAGGAGCTTCAGTTGATGATGAGATCAGGGGAAGGTCCTCAACGTCTTCGATCGTTAGTTATCGCGAAGTCAAGTTTGGAGGCTTTGCCCCCTTGGCTTGAAGATTCTGCAGACACTCTACAGAGCATATATCTTTATAGATGTCATAATCTCACGGCACTTCCGGAGTTGATAAACTTCAGATTCCTCGAGCAACTACGCATTGGCGAATGCTCCAAATTGACGGCTTTGCCTGAAGAACTGCACTGCCTTACTGAGTTGAGAGGATTGAGGATTTCAAGGTGTCCTGAATTGAGCAAAAGCTGCAAAAGGCAATTAAAAGGTGAGGAGTGGTCAAAGATGGCACGTCGGGTGAAGATTACACTCGACGCTGATGATGAAGAAGATGAAGCCGACAATCGCTTGGCCGACCCGCGACGACGCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

875

Amino Acids

100.4

Weight (kDa)

6.63

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	10 - 89	6.3e-18	Rx N-terminal domain
NB-ARC	PF00931	178 - 356	1.1e-30	NB-ARC domain
WHD_DRP	PF23559	439 - 509	3.6e-17	Disease resistance protein Winged helix domain
LRR_14	PF23598	576 - 770	2.2e-27	Leucine-rich repeat region
LRR_4	PF12799	606 - 646	3.5e-06	Leucine Rich repeats (2 copies)
LRR_RPS2	PF23247	696 - 828	2.1e-06	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_R13L1-DRL21	PF25019	746 - 804	7.4e-07	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1842
AatII	GACGTC	1 cut(s)	2020
Acc36I	ACCTGC	1 cut(s)	1258
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	2 cut(s)	2264, 2614
AccIII	TCCGGA	1 cut(s)	2362
AciI	CCGC	5 cut(s)	1339, 1753, 1910, 2169, 2612
AclWI	GGATC	4 cut(s)	443, 801, 1482, 2077
AcoI	YGGCCR	1 cut(s)	2604
AcsI	RAATTY	4 cut(s)	682, 834, 1334, 1888
AcuI	CTGAAG	5 cut(s)	465, 1713, 2192, 2362, 2454
AcyI	GRCGYC	2 cut(s)	2017, 2620
AfaI	GTAC	4 cut(s)	306, 659, 1550, 1904
AfiI	CCNNNNNNNGG	1 cut(s)	615
AflII	CTTAAG	1 cut(s)	1658
AflIII	ACRYGT	2 cut(s)	1218, 1597
AhlI	ACTAGT	2 cut(s)	133, 385
AjiI	CACGTC	1 cut(s)	2546
AjnI	CCWGG	1 cut(s)	2199
AjuI	GAANNNNNNNTTGG	2 cut(s)	2258, 2290
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
Alw21I	GWGCWC	3 cut(s)	99, 141, 474
Alw26I	GTCTC	4 cut(s)	403, 683, 1889, 2024
Alw44I	GTGCAC	1 cut(s)	470
AlwI	GGATC	4 cut(s)	443, 801, 1482, 2077
Ama87I	CYCGRG	3 cut(s)	140, 1735, 2387
Aor13HI	TCCGGA	1 cut(s)	2362
AoxI	GGCC	1 cut(s)	2604
ApaLI	GTGCAC	1 cut(s)	470
ApeKI	GCWGC	3 cut(s)	758, 1882, 2502
ApoI	RAATTY	4 cut(s)	682, 834, 1334, 1888
AseI	ATTAAT	1 cut(s)	737
Asp700I	GAANNNNTTC	1 cut(s)	1590
AspLEI	GCGC	2 cut(s)	86, 460
AspS9I	GGNCC	2 cut(s)	767, 2234
AsuHPI	GGTGA	4 cut(s)	91, 2014, 2534, 2563
AsuNHI	GCTAGC	2 cut(s)	43, 1366
AvaI	CYCGRG	3 cut(s)	140, 1735, 2387
AvaII	GGWCC	2 cut(s)	767, 2234
BaeGI	GKGCMC	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	453
BbsI	GAAGAC	2 cut(s)	1730, 2237
Bbv12I	GWGCWC	3 cut(s)	99, 141, 474
BbvI	GCAGC	3 cut(s)	745, 1869, 2489
BccI	CCATC	4 cut(s)	1465, 1880, 2042, 2533
BceAI	ACGGC	3 cut(s)	2370, 2439, 2607
BciT130I	CCWGG	1 cut(s)	2201
BciVI	GTATCC	1 cut(s)	859
BclI	TGATCA	1 cut(s)	1956
BcoDI	GTCTC	4 cut(s)	403, 683, 1889, 2024
BcuI	ACTAGT	2 cut(s)	133, 385
BfaI	CTAG	8 cut(s)	44, 134, 386, 1367, 1449, 1511, 1575, 1760
BfmI	CTRYAG	3 cut(s)	1155, 2307, 2318
BfoI	RGCGCY	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	1658
BfuAI	ACCTGC	1 cut(s)	1258
BfuI	GTATCC	1 cut(s)	859
BglI	GCCNNNNNGGC	1 cut(s)	2293
BglII	AGATCT	3 cut(s)	66, 1451, 1762
BisI	GCNGC	3 cut(s)	759, 1883, 2503
BlsI	GCNGC	3 cut(s)	760, 1884, 2504
BmcAI	AGTACT	1 cut(s)	1550
Bme1390I	CCNGG	1 cut(s)	2201
Bme18I	GGWCC	2 cut(s)	767, 2234
BmeT110I	CYCGRG	3 cut(s)	140, 1735, 2387
BmgBI	CACGTC	1 cut(s)	2546
BmgT120I	GGNCC	2 cut(s)	767, 2234
BmiI	GGNNCC	1 cut(s)	1952
BmrFI	CCNGG	1 cut(s)	2201
BmsI	GCATC	3 cut(s)	136, 565, 1261
BmtI	GCTAGC	2 cut(s)	47, 1370
BoxI	GACNNNNGTC	1 cut(s)	1600
BpiI	GAAGAC	2 cut(s)	1730, 2237
BpmI	CTGGAG	2 cut(s)	502, 565
BpuEI	CTTGAG	3 cut(s)	113, 446, 1946
BsaHI	GRCGYC	2 cut(s)	2017, 2620
BsaI	GGTCTC	1 cut(s)	1889
BsaJI	CCNNGG	1 cut(s)	2291
BsaWI	WCCGGW	1 cut(s)	2362
BsaXI	ACNNNNNCTCC	4 cut(s)	1886, 1916, 2195, 2225
Bsc4I	CCNNNNNNNGG	1 cut(s)	615
Bse1I	ACTGG	5 cut(s)	246, 332, 485, 582, 1199
Bse3DI	GCAATG	2 cut(s)	18, 1274
BseAI	TCCGGA	1 cut(s)	2362
BseBI	CCWGG	1 cut(s)	2201
BseDI	CCNNGG	1 cut(s)	2291
BseGI	GGATG	5 cut(s)	151, 492, 859, 1047, 2057
BseLI	CCNNNNNNNGG	1 cut(s)	615
BseMI	GCAATG	2 cut(s)	18, 1274
BseMII	CTCAG	2 cut(s)	1780, 2445
BseNI	ACTGG	5 cut(s)	246, 332, 485, 582, 1199
BseRI	GAGGAG	5 cut(s)	602, 1083, 1146, 1943, 2540
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	745, 1869, 2489
BsgI	GTGCAG	2 cut(s)	1236, 2426
Bsh1236I	CGCG	2 cut(s)	2264, 2614
Bsh1285I	CGRYCG	1 cut(s)	2252
BshFI	GGCC	1 cut(s)	2606
BsiEI	CGRYCG	1 cut(s)	2252
BsiHKAI	GWGCWC	3 cut(s)	99, 141, 474
BsiHKCI	CYCGRG	3 cut(s)	140, 1735, 2387
BsiSI	CCGG	1 cut(s)	2363
BslFI	GGGAC	3 cut(s)	369, 975, 1554
BslI	CCNNNNNNNGG	1 cut(s)	615
BsmAI	GTCTC	4 cut(s)	403, 683, 1889, 2024
BsmBI	CGTCTC	1 cut(s)	2024
BsmFI	GGGAC	3 cut(s)	369, 975, 1554
BsmI	GAATGC	2 cut(s)	1003, 2414
BsnI	GGCC	1 cut(s)	2606
Bso31I	GGTCTC	1 cut(s)	1889
BsoBI	CYCGRG	3 cut(s)	140, 1735, 2387
Bsp1286I	GDGCHC	3 cut(s)	99, 141, 474
Bsp13I	TCCGGA	1 cut(s)	2362
Bsp1407I	TGTACA	1 cut(s)	657
Bsp68I	TCGCGA	1 cut(s)	2264
BspACI	CCGC	5 cut(s)	1339, 1753, 1910, 2169, 2612
BspANI	GGCC	1 cut(s)	2606
BspCNI	CTCAG	2 cut(s)	1779, 2446
BspEI	TCCGGA	1 cut(s)	2362
BspFNI	CGCG	2 cut(s)	2264, 2614
BspHI	TCATGA	2 cut(s)	1488, 1516
BspLI	GGNNCC	1 cut(s)	1952
BspMAI	CTGCAG	1 cut(s)	2311
BspMI	ACCTGC	1 cut(s)	1258
BspOI	GCTAGC	2 cut(s)	47, 1370
BspPI	GGATC	4 cut(s)	443, 801, 1482, 2077
BspQI	GCTCTTC	1 cut(s)	1779
BspTI	CTTAAG	1 cut(s)	1658
BspTNI	GGTCTC	1 cut(s)	1889
BsrDI	GCAATG	2 cut(s)	18, 1274
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	5 cut(s)	246, 332, 485, 582, 1199
BssECI	CCNNGG	1 cut(s)	2291
BssNI	GRCGYC	2 cut(s)	2017, 2620
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	2291
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	2201
Bst4CI	ACNGT	5 cut(s)	284, 414, 1156, 1362, 1558
Bst6I	CTCTTC	4 cut(s)	520, 1626, 1779, 2073
BstACI	GRCGYC	2 cut(s)	2017, 2620
BstAFI	CTTAAG	1 cut(s)	1658
BstAPI	GCANNNNNTGC	1 cut(s)	2502
BstAUI	TGTACA	1 cut(s)	657
BstC8I	GCNNGC	5 cut(s)	13, 45, 1166, 1368, 1973
BstDEI	CTNAG	4 cut(s)	435, 824, 1766, 2454
BstF5I	GGATG	5 cut(s)	151, 492, 859, 1047, 2057
BstFNI	CGCG	2 cut(s)	2264, 2614
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 460
BstMAI	GTCTC	4 cut(s)	403, 683, 1889, 2024
BstMCI	CGRYCG	1 cut(s)	2252
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 83, 103, 440, 2293, 2502
BstNI	CCWGG	1 cut(s)	2201
BstNSI	RCATGY	8 cut(s)	56, 1003, 1039, 1168, 1222, 1392, 1601, 1975
BstPAI	GACNNNNGTC	1 cut(s)	1600
BstSCI	CCNGG	1 cut(s)	2199
BstSFI	CTRYAG	3 cut(s)	1155, 2307, 2318
BstSLI	GKGCMC	1 cut(s)	474
BstUI	CGCG	2 cut(s)	2264, 2614
BstV1I	GCAGC	3 cut(s)	745, 1869, 2489
BstV2I	GAAGAC	2 cut(s)	1730, 2237
BstX2I	RGATCY	7 cut(s)	66, 448, 793, 1451, 1474, 1762, 2082
BstYI	RGATCY	7 cut(s)	66, 448, 793, 1451, 1474, 1762, 2082
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	1 cut(s)	2606
BtrI	CACGTC	1 cut(s)	2546
BtsCI	GGATG	5 cut(s)	151, 492, 859, 1047, 2057
BtsI	GCAGTG	3 cut(s)	1085, 1348, 2443
BtsIMutI	CAGTG	8 cut(s)	570, 589, 1085, 1192, 1348, 1358, 1539, 2443
BtuMI	TCGCGA	1 cut(s)	2264
BveI	ACCTGC	1 cut(s)	1258
Cac8I	GCNNGC	5 cut(s)	13, 45, 1166, 1368, 1973
CciI	TCATGA	2 cut(s)	1488, 1516
CfoI	GCGC	2 cut(s)	86, 460
Cfr13I	GGNCC	2 cut(s)	767, 2234
CseI	GACGC	1 cut(s)	2576
Csp6I	GTAC	4 cut(s)	305, 658, 1549, 1903
CspCI	CAANNNNNGTGG	6 cut(s)	1013, 1048, 1269, 1304, 1515, 1550
CviQI	GTAC	4 cut(s)	305, 658, 1549, 1903
DdeI	CTNAG	4 cut(s)	435, 824, 1766, 2454
DraI	TTTAAA	3 cut(s)	909, 1063, 1498
EaeI	YGGCCR	1 cut(s)	2604
Eam1104I	CTCTTC	4 cut(s)	520, 1626, 1779, 2073
EarI	CTCTTC	4 cut(s)	520, 1626, 1779, 2073
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	2291
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	1889
Eco32I	GATATC	1 cut(s)	859
Eco47I	GGWCC	2 cut(s)	767, 2234
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	5 cut(s)	465, 1713, 2192, 2362, 2454
Eco88I	CYCGRG	3 cut(s)	140, 1735, 2387
EcoICRI	GAGCTC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	2234
EcoRI	GAATTC	1 cut(s)	1334
EcoRII	CCWGG	1 cut(s)	2199
EcoRV	GATATC	1 cut(s)	859
EcoT14I	CCWWGG	1 cut(s)	2291
EcoT22I	ATGCAT	2 cut(s)	1005, 1276
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	2291
Esp3I	CGTCTC	1 cut(s)	2024
FalI	AAGNNNNNCTT	6 cut(s)	545, 577, 807, 839, 1608, 1640
FaqI	GGGAC	3 cut(s)	369, 975, 1554
FauI	CCCGC	3 cut(s)	1746, 1903, 2619
FbaI	TGATCA	1 cut(s)	1956
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	759, 1883, 2503
FokI	GGATG	5 cut(s)	158, 499, 866, 1034, 2064
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	759, 1883, 2503
FspBI	CTAG	8 cut(s)	44, 134, 386, 1367, 1449, 1511, 1575, 1760
GlaI	GCGC	2 cut(s)	85, 459
GluI	GCNGC	3 cut(s)	759, 1883, 2503
GsuI	CTGGAG	2 cut(s)	502, 565
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	2606
HapII	CCGG	1 cut(s)	2363
HgaI	GACGC	1 cut(s)	2576
HhaI	GCGC	2 cut(s)	86, 460
Hin1I	GRCGYC	2 cut(s)	2017, 2620
Hin6I	GCGC	2 cut(s)	84, 458
HinP1I	GCGC	2 cut(s)	84, 458
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	7 cut(s)	328, 988, 1708, 1740, 2138, 2303, 2382
HpaII	CCGG	1 cut(s)	2363
HphI	GGTGA	4 cut(s)	91, 2014, 2534, 2563
Hpy166II	GTNNAC	4 cut(s)	277, 472, 658, 1313
Hpy188I	TCNGA	4 cut(s)	715, 1208, 1967, 2381
Hpy8I	GTNNAC	4 cut(s)	277, 472, 658, 1313
Hpy99I	CGWCG	4 cut(s)	2550, 2570, 2619, 2622
HpyAV	CCTTC	3 cut(s)	1007, 2111, 2225
HpyCH4III	ACNGT	5 cut(s)	284, 414, 1156, 1362, 1558
HpyCH4IV	ACGT	6 cut(s)	30, 219, 1994, 2017, 2242, 2545
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 83, 103, 440, 2293, 2502
HpyF3I	CTNAG	4 cut(s)	435, 824, 1766, 2454
HpySE526I	ACGT	6 cut(s)	30, 219, 1994, 2017, 2242, 2545
Hsp92I	GRCGYC	2 cut(s)	2017, 2620
HspAI	GCGC	2 cut(s)	84, 458
Kpn2I	TCCGGA	1 cut(s)	2362
Ksp22I	TGATCA	1 cut(s)	1956
LguI	GCTCTTC	1 cut(s)	1779
LmnI	GCTCC	7 cut(s)	81, 111, 929, 1075, 1161, 2203, 2417
Lsp1109I	GCAGC	3 cut(s)	745, 1869, 2489
LweI	GCATC	3 cut(s)	136, 565, 1261
MaeI	CTAG	8 cut(s)	44, 134, 386, 1367, 1449, 1511, 1575, 1760
MaeII	ACGT	6 cut(s)	30, 219, 1994, 2017, 2242, 2545
MaeIII	GTNAC	2 cut(s)	883, 1916
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	7 cut(s)	66, 448, 793, 1451, 1474, 1762, 2082
MhlI	GDGCHC	3 cut(s)	99, 141, 474
MlyI	GAGTC	1 cut(s)	997
MmeI	TCCRAC	1 cut(s)	831
Mph1103I	ATGCAT	2 cut(s)	1005, 1276
MroI	TCCGGA	1 cut(s)	2362
MroXI	GAANNNNTTC	1 cut(s)	1590
MspCI	CTTAAG	1 cut(s)	1658
MspI	CCGG	1 cut(s)	2363
MspR9I	CCNGG	1 cut(s)	2201
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	2 cut(s)	1003, 2414
MvaI	CCWGG	1 cut(s)	2201
MvnI	CGCG	2 cut(s)	2264, 2614
MwoI	GCNNNNNNNGC	6 cut(s)	53, 83, 103, 440, 2293, 2502
NheI	GCTAGC	2 cut(s)	43, 1366
NlaIV	GGNNCC	1 cut(s)	1952
NruI	TCGCGA	1 cut(s)	2264
NsiI	ATGCAT	2 cut(s)	1005, 1276
NspI	RCATGY	8 cut(s)	56, 1003, 1039, 1168, 1222, 1392, 1601, 1975
PaeI	GCATGC	2 cut(s)	1168, 1975
PaeR7I	CTCGAG	3 cut(s)	140, 1735, 2387
PagI	TCATGA	2 cut(s)	1488, 1516
PciI	ACATGT	2 cut(s)	1218, 1597
PciSI	GCTCTTC	1 cut(s)	1779
PcsI	WCGNNNNNNNCGW	1 cut(s)	2000
PctI	GAATGC	2 cut(s)	1003, 2414
PdmI	GAANNNNTTC	1 cut(s)	1590
PfeI	GAWTC	6 cut(s)	328, 1708, 1740, 2138, 2303, 2382
PkrI	GCNGC	3 cut(s)	760, 1884, 2504
Ple19I	CGATCG	1 cut(s)	2252
PleI	GAGTC	1 cut(s)	996
PpsI	GAGTC	1 cut(s)	996
PpuMI	RGGWCCY	1 cut(s)	2234
PscI	ACATGT	2 cut(s)	1218, 1597
PshAI	GACNNNNGTC	1 cut(s)	1600
PshBI	ATTAAT	1 cut(s)	737
PsiI	TTATAA	1 cut(s)	1842
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	2234
Psp6I	CCWGG	1 cut(s)	2199
PspGI	CCWGG	1 cut(s)	2199
PspN4I	GGNNCC	1 cut(s)	1952
PspPI	GGNCC	2 cut(s)	767, 2234
PspPPI	RGGWCCY	1 cut(s)	2234
PspXI	VCTCGAGB	2 cut(s)	140, 2387
PstI	CTGCAG	1 cut(s)	2311
PsuI	RGATCY	7 cut(s)	66, 448, 793, 1451, 1474, 1762, 2082
PvuI	CGATCG	1 cut(s)	2252
RruI	TCGCGA	1 cut(s)	2264
RsaI	GTAC	4 cut(s)	306, 659, 1550, 1904
RsaNI	GTAC	4 cut(s)	305, 658, 1549, 1903
SacI	GAGCTC	1 cut(s)	99
SalI	GTCGAC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	1779
SatI	GCNGC	3 cut(s)	759, 1883, 2503
Sau96I	GGNCC	2 cut(s)	767, 2234
ScaI	AGTACT	1 cut(s)	1550
SchI	GAGTC	1 cut(s)	997
ScrFI	CCNGG	1 cut(s)	2201
SduI	GDGCHC	3 cut(s)	99, 141, 474
SfaNI	GCATC	3 cut(s)	136, 565, 1261
SfcI	CTRYAG	3 cut(s)	1155, 2307, 2318
Sfr274I	CTCGAG	3 cut(s)	140, 1735, 2387
SinI	GGWCC	2 cut(s)	767, 2234
SlaI	CTCGAG	3 cut(s)	140, 1735, 2387
SmlI	CTYRAG	7 cut(s)	92, 140, 425, 1658, 1735, 1925, 2387
SmoI	CTYRAG	7 cut(s)	92, 140, 425, 1658, 1735, 1925, 2387
SpeI	ACTAGT	2 cut(s)	133, 385
SphI	GCATGC	2 cut(s)	1168, 1975
SsiI	CCGC	5 cut(s)	1339, 1753, 1910, 2169, 2612
SspI	AATATT	1 cut(s)	1243
SspMI	CTAG	8 cut(s)	44, 134, 386, 1367, 1449, 1511, 1575, 1760
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	2199
StyI	CCWWGG	1 cut(s)	2291
TaaI	ACNGT	5 cut(s)	284, 414, 1156, 1362, 1558
TaiI	ACGT	6 cut(s)	33, 222, 1997, 2020, 2245, 2548
TaqI	TCGA	9 cut(s)	141, 276, 742, 1467, 1594, 1736, 2248, 2388, 2565
TatI	WGTACW	2 cut(s)	657, 1548
TfiI	GAWTC	6 cut(s)	328, 1708, 1740, 2138, 2303, 2382
TscAI	CASTG	8 cut(s)	577, 589, 1085, 1199, 1348, 1365, 1539, 2450
TseI	GCWGC	3 cut(s)	758, 1882, 2502
TspRI	CASTG	8 cut(s)	577, 589, 1085, 1199, 1348, 1365, 1539, 2450
Vha464I	CTTAAG	1 cut(s)	1658
VneI	GTGCAC	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	767, 2234
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	4 cut(s)	682, 834, 1334, 1888
XbaI	TCTAGA	1 cut(s)	1448
XceI	RCATGY	8 cut(s)	56, 1003, 1039, 1168, 1222, 1392, 1601, 1975
XhoI	CTCGAG	3 cut(s)	140, 1735, 2387
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	1590
XspI	CTAG	8 cut(s)	44, 134, 386, 1367, 1449, 1511, 1575, 1760
ZraI	GACGTC	1 cut(s)	2018
ZrmI	AGTACT	1 cut(s)	1550
Zsp2I	ATGCAT	2 cut(s)	1005, 1276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.