Rh2CG306700

Sigma factor binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005038
Physical Location & Seq
Reverse (-)
36645822 .. 36647297
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG306700.1

Sequence Viewer

Length: 375 bp
ATGAAGCATCAAACTCAAAGTCAAGCAAAGACGAGAAGCTCCAGCTGCAAATCCAAGAAGAAGCCGATCAAAGTGGTTTACATATCAAACCCGATGAAGATTACAACGAGCGCCTCCGAATTCAGGGCTTTGGTTCAGCAGCTCACCGGCCAAGATGCTGACGACCTGCCAGATCTCCATCGTACTAGCAACAACCACCTCATCACACCAATGGTCAGCAGCAGGCGGCAGCCAGAAAGTTCAAACTCAAATACCACCACCCAATATTATGATGATCATGATGAGCATCACCAGCACTTGTATGACGACGTCGATGGTCTTTTTGTGCCTGAAATGCTTGATAGCTTTGTGCCTGCCGTCAAGGGTTTTCTTTGA

Protein Analysis

124

Amino Acids

14.08

Weight (kDa)

6.64

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 28 - 54 8.2e-13 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
Acc36I ACCTGC 1 cut(s) 174
AciI CCGC 1 cut(s) 226
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 1 cut(s) 243
AluBI AGCT 4 cut(s) 39, 45, 142, 345
AluI AGCT 4 cut(s) 39, 45, 142, 345
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 4 cut(s) 45, 139, 219, 229
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspLEI GCGC 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 136, 281
BbvI GCAGC 4 cut(s) 32, 151, 231, 241
BccI CCATC 2 cut(s) 186, 308
BceAI ACGGC 1 cut(s) 341
BclI TGATCA 1 cut(s) 274
BfaI CTAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 174
BglII AGATCT 1 cut(s) 172
BisI GCNGC 5 cut(s) 46, 140, 220, 227, 230
BlsI GCNGC 5 cut(s) 47, 141, 221, 228, 231
BmsI GCATC 3 cut(s) 16, 145, 295
BpmI CTGGAG 1 cut(s) 25
BsaBI GATNNNNATC 2 cut(s) 177, 285
BsaHI GRCGYC 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 146
Bse8I GATNNNNATC 2 cut(s) 177, 285
BseJI GATNNNNATC 2 cut(s) 177, 285
BseLI CCNNNNNNNGG 1 cut(s) 123
BseXI GCAGC 4 cut(s) 32, 151, 231, 241
BshFI GGCC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 1 cut(s) 150
Bsp143I GATC 3 cut(s) 66, 172, 274
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 150
BspHI TCATGA 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssMI GATC 3 cut(s) 66, 172, 274
BssNI GRCGYC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 224, 354
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 3 cut(s) 69, 175, 277
BstMBI GATC 3 cut(s) 66, 172, 274
BstMWI GCNNNNNNNGC 3 cut(s) 45, 292, 334
BstV1I GCAGC 4 cut(s) 32, 151, 231, 241
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 150
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 224, 354
CciI TCATGA 1 cut(s) 277
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 146
Csp6I GTAC 1 cut(s) 183
CviAII CATG 1 cut(s) 278
CviJI RGCY 8 cut(s) 39, 45, 64, 128, 142, 150, 232, 345
CviKI_1 RGCY 8 cut(s) 39, 45, 64, 128, 142, 150, 232, 345
CviQI GTAC 1 cut(s) 183
DpnI GATC 3 cut(s) 68, 174, 276
DpnII GATC 3 cut(s) 66, 172, 274
EaeI YGGCCR 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 119
FaeI CATG 1 cut(s) 281
FaiI YATR 4 cut(s) 83, 270, 279, 303
FatI CATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 5 cut(s) 46, 140, 220, 227, 230
Fsp4HI GCNGC 5 cut(s) 46, 140, 220, 227, 230
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 112
GluI GCNGC 5 cut(s) 46, 140, 220, 227, 230
GsuI CTGGAG 1 cut(s) 25
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 281
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HpaII CCGG 1 cut(s) 147
HphI GGTGA 2 cut(s) 136, 281
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 311, 314
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 48
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 292, 334
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 281
HspAI GCGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 3 cut(s) 66, 172, 274
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 4 cut(s) 32, 151, 231, 241
LweI GCATC 3 cut(s) 16, 145, 295
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 309
MalI GATC 3 cut(s) 68, 174, 276
MboI GATC 3 cut(s) 66, 172, 274
MboII GAAGA 2 cut(s) 70, 109
MflI RGATCY 1 cut(s) 172
MluCI AATT 1 cut(s) 119
MnlI CCTC 2 cut(s) 124, 209
MslI CAYNNNNRTG 2 cut(s) 209, 300
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 45, 292, 334
NdeII GATC 3 cut(s) 66, 172, 274
NlaIII CATG 1 cut(s) 281
PagI TCATGA 1 cut(s) 277
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 5 cut(s) 47, 141, 221, 228, 231
PsuI RGATCY 1 cut(s) 172
PsyI GACNNNGTC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 2 cut(s) 209, 300
SatI GCNGC 5 cut(s) 46, 140, 220, 227, 230
Sau3AI GATC 3 cut(s) 66, 172, 274
SetI ASST 7 cut(s) 41, 47, 144, 168, 201, 312, 347
SfaNI GCATC 3 cut(s) 16, 145, 295
SmiMI CAYNNNNRTG 2 cut(s) 209, 300
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 266
SspMI CTAG 1 cut(s) 186
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 312
TasI AATT 1 cut(s) 119
TauI GCSGC 1 cut(s) 229
TseI GCWGC 4 cut(s) 45, 139, 219, 229
TspDTI ATGAA 2 cut(s) 17, 110
Tth111I GACNNNGTC 1 cut(s) 308
XapI RAATTY 1 cut(s) 119
XspI CTAG 1 cut(s) 186
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.