Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

8657136 .. 8657531

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG058600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGATATGTTGGGGGTGAGCAACCGGAGCCCGAAGCAGAGCAAGAGAAGCAAATCGTCAAAGGGGGTGAAGGTGGTGTACATATCGAGCCCTATGAAGGTTCAAACCAGTGCCTCTAAGTTCAGGGCGCTTGTGCAGGAGCTCACCGGCCGAGACTCCGACGCCGAGCGGTTCATGGAGACCAACGGCGGTGGTGGTCACCGTCATCAGAATATTCCTGAGTTTTCTCATGAGCAGCAACTCAAGGCCGCTGATGGTGACCATCATGTATTCCCTCACCATCAGATTCCTTTCTCGAATTCGATTTATGAGTTTCCGAATTGCTCCGACTCTTTCTTTGAACCGTTTACTGGGCATTTTGAGCTCGATGTGCTCAGAAGCTTTGATCAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009814 GO:0009816 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0080090 GO:0098542 GO:0104004 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

131

Amino Acids

14.83

Weight (kDa)

6.7

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	28 - 54	9e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	3 cut(s)	169, 189, 249
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	97, 350
AgsI	TTSAA	2 cut(s)	104, 341
AluBI	AGCT	3 cut(s)	142, 364, 381
AluI	AGCT	3 cut(s)	142, 364, 381
Alw21I	GWGCWC	3 cut(s)	144, 366, 375
Alw26I	GTCTC	2 cut(s)	147, 173
AoxI	GGCC	2 cut(s)	148, 246
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	298
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspLEI	GCGC	1 cut(s)	130
AsuHPI	GGTGA	6 cut(s)	28, 79, 136, 191, 269, 269
BanII	GRGCYC	4 cut(s)	32, 92, 144, 366
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
Bbv12I	GWGCWC	3 cut(s)	144, 366, 375
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	3 cut(s)	248, 270, 288
BceAI	ACGGC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	147, 173
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	2 cut(s)	236, 249
BlsI	GCNGC	2 cut(s)	237, 250
BmiI	GGNNCC	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 350
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	108, 355
BseLI	CCNNNNNNNGG	2 cut(s)	97, 350
BseMII	CTCAG	2 cut(s)	210, 388
BseNI	ACTGG	2 cut(s)	108, 355
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	150, 248
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	3 cut(s)	144, 366, 375
BsiSI	CCGG	2 cut(s)	25, 147
BslI	CCNNNNNNNGG	2 cut(s)	97, 350
BsmAI	GTCTC	2 cut(s)	147, 173
BsnI	GGCC	2 cut(s)	150, 248
Bso31I	GGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	5 cut(s)	32, 92, 144, 366, 375
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	3 cut(s)	169, 189, 249
BspANI	GGCC	2 cut(s)	150, 248
BspCNI	CTCAG	2 cut(s)	211, 387
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	108, 355
BssAI	RCCGGY	1 cut(s)	146
BssMI	GATC	1 cut(s)	385
BssNI	GRCGYC	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	203, 345
BstACI	GRCGYC	1 cut(s)	162
BstAUI	TGTACA	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	117, 219, 374
BstEII	GGTNACC	2 cut(s)	197, 257
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	2 cut(s)	147, 173
BstMBI	GATC	1 cut(s)	385
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 48, 361, 370
BstPI	GGTNACC	2 cut(s)	197, 257
BstV1I	GCAGC	1 cut(s)	247
BstZI	CGGCCG	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	150, 248
BtsIMutI	CAGTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	146
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	3 cut(s)	175, 230, 266
CviJI	RGCY	7 cut(s)	30, 90, 142, 150, 248, 364, 381
CviKI_1	RGCY	7 cut(s)	30, 90, 142, 150, 248, 364, 381
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	3 cut(s)	117, 219, 374
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
EaeI	YGGCCR	1 cut(s)	148
EagI	CGGCCG	1 cut(s)	148
Ecl136II	GAGCTC	2 cut(s)	142, 364
EclXI	CGGCCG	1 cut(s)	148
Eco24I	GRGCYC	4 cut(s)	32, 92, 144, 366
Eco31I	GGTCTC	1 cut(s)	173
Eco52I	CGGCCG	1 cut(s)	148
Eco53kI	GAGCTC	2 cut(s)	142, 364
Eco91I	GGTNACC	2 cut(s)	197, 257
EcoICRI	GAGCTC	2 cut(s)	142, 364
EcoO65I	GGTNACC	2 cut(s)	197, 257
EcoRI	GAATTC	1 cut(s)	298
EcoT38I	GRGCYC	4 cut(s)	32, 92, 144, 366
FaeI	CATG	3 cut(s)	178, 233, 269
FaiI	YATR	8 cut(s)	8, 83, 95, 176, 231, 267, 309, 394
FatI	CATG	3 cut(s)	174, 229, 265
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	236, 249
FriOI	GRGCYC	4 cut(s)	32, 92, 144, 366
Fsp4HI	GCNGC	2 cut(s)	236, 249
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	236, 249
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	150, 248
HapII	CCGG	2 cut(s)	25, 147
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	178, 233, 269
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	3 cut(s)	155, 286, 329
HpaII	CCGG	2 cut(s)	25, 147
HphI	GGTGA	6 cut(s)	28, 79, 136, 191, 269, 269
Hpy166II	GTNNAC	2 cut(s)	79, 348
Hpy188I	TCNGA	6 cut(s)	160, 210, 285, 318, 328, 377
Hpy188III	TCNNGA	3 cut(s)	218, 230, 295
Hpy8I	GTNNAC	2 cut(s)	79, 348
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	64, 91
HpyCH4III	ACNGT	2 cut(s)	203, 345
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 48, 361, 370
HpyF3I	CTNAG	3 cut(s)	117, 219, 374
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	178, 233, 269
HspAI	GCGC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	385
LmnI	GCTCC	3 cut(s)	27, 139, 329
LpnPI	CCDG	7 cut(s)	38, 109, 121, 122, 160, 231, 336
Lsp1109I	GCAGC	1 cut(s)	247
MaeIII	GTNAC	2 cut(s)	197, 257
MalI	GATC	1 cut(s)	387
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	1 cut(s)	385
MhlI	GDGCHC	5 cut(s)	32, 92, 144, 366, 375
MluCI	AATT	2 cut(s)	298, 319
MlyI	GAGTC	2 cut(s)	149, 323
MmeI	TCCRAC	2 cut(s)	183, 351
MnlI	CCTC	2 cut(s)	124, 285
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	2 cut(s)	25, 147
MwoI	GCNNNNNNNGC	4 cut(s)	27, 48, 361, 370
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	3 cut(s)	178, 233, 269
NlaIV	GGNNCC	1 cut(s)	29
NmeAIII	GCCGAG	2 cut(s)	176, 190
NmuCI	GTSAC	2 cut(s)	197, 257
PagI	TCATGA	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	237, 250
PleI	GAGTC	2 cut(s)	149, 323
PpsI	GAGTC	2 cut(s)	149, 323
Psp124BI	GAGCTC	2 cut(s)	144, 366
PspEI	GGTNACC	2 cut(s)	197, 257
PspN4I	GGNNCC	1 cut(s)	29
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SacI	GAGCTC	2 cut(s)	144, 366
SatI	GCNGC	2 cut(s)	236, 249
Sau3AI	GATC	1 cut(s)	385
SchI	GAGTC	2 cut(s)	149, 323
SduI	GDGCHC	5 cut(s)	32, 92, 144, 366, 375
SetI	ASST	5 cut(s)	75, 102, 144, 366, 383
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	298, 319
SsiI	CCGC	3 cut(s)	169, 189, 249
SspI	AATATT	1 cut(s)	214
SstI	GAGCTC	2 cut(s)	144, 366
TaaI	ACNGT	2 cut(s)	203, 345
TaqI	TCGA	4 cut(s)	86, 296, 302, 366
TasI	AATT	2 cut(s)	298, 319
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	197, 257
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	2 cut(s)	197, 257
TspDTI	ATGAA	2 cut(s)	110, 163
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.