Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

11082164 .. 11082682

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1088500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAATAACCCTAACCCTAACCCTAACCAACAAAGTAGTAAAACTAACAAAGCCAAAAATAGAAAGACTACGAAAAGTAGTAACAGTAGCAAGAAAAAGCAAGGCGGCATCAAAGTTGTGTACATCTCCAACCCAATGAAGGTGATTACGAGTGCCTCACAATTCAGGGCTTTGGTTCAGGAGCTCACCGGCCAAGACTCCGCGCTCCCGGCCGACCCCGCTAGGTTTTCGGCCGTGTACTCATCGTCTCCGAACAGCAGTTTCATCGGTGAGGCGCTTCCGGATTCGACAGTGCAGAATCATCATCATCATCATGAACATCTTCATGATTATGCATTAGATCGAGAGGTGGCTTCCAGTCCTACTAGTTACCAAGAGCAGGCAGCTGGGAGTTCAAACTCAAATGATAGCAAAAATCAGCACGAGATTGAGCTGTATGATGATCTTTTTGTGCCTGAAATGGTTGACAACTTTGGGGGTTTGTTGCCTTCCACTGTCATGTATGGATCTTCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

173

Amino Acids

18.76

Weight (kDa)

6.43

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	42 - 68	3.8e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	3 cut(s)	105, 201, 219
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	3 cut(s)	190, 210, 231
AfaI	GTAC	2 cut(s)	122, 239
AfiI	CCNNNNNNNGG	2 cut(s)	139, 379
AgsI	TTSAA	1 cut(s)	396
AhlI	ACTAGT	1 cut(s)	365
AluBI	AGCT	3 cut(s)	184, 386, 433
AluI	AGCT	3 cut(s)	184, 386, 433
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	514
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	3 cut(s)	190, 210, 231
ApeKI	GCWGC	1 cut(s)	383
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	2 cut(s)	205, 277
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	154, 178, 281
BanII	GRGCYC	1 cut(s)	186
BauI	CACGAG	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	2 cut(s)	222, 366
BfoI	RGCGCY	1 cut(s)	278
BisI	GCNGC	2 cut(s)	106, 384
BlsI	GCNGC	2 cut(s)	107, 385
Bme1390I	CCNGG	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 379
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	280
BseLI	CCNNNNNNNGG	2 cut(s)	139, 379
BseNI	ACTGG	1 cut(s)	357
BseX3I	CGGCCG	2 cut(s)	210, 231
BseXI	GCAGC	1 cut(s)	395
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	203
Bsh1285I	CGRYCG	2 cut(s)	213, 234
BshFI	GGCC	3 cut(s)	192, 212, 233
BsiEI	CGRYCG	2 cut(s)	213, 234
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	3 cut(s)	189, 209, 281
BslI	CCNNNNNNNGG	2 cut(s)	139, 379
BsmAI	GTCTC	1 cut(s)	252
BsmBI	CGTCTC	1 cut(s)	252
BsnI	GGCC	3 cut(s)	192, 212, 233
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	340, 442, 506
BspACI	CCGC	3 cut(s)	105, 201, 219
BspANI	GGCC	3 cut(s)	192, 212, 233
BspEI	TCCGGA	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	203
BspHI	TCATGA	2 cut(s)	313, 325
BspPI	GGATC	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	3 cut(s)	340, 442, 506
BssSI	CACGAG	1 cut(s)	422
Bst2BI	CACGAG	1 cut(s)	422
Bst4CI	ACNGT	3 cut(s)	86, 292, 496
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	381
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	205, 277
BstKTI	GATC	3 cut(s)	343, 445, 509
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	3 cut(s)	340, 442, 506
BstMCI	CGRYCG	2 cut(s)	213, 234
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 218
BstSCI	CCNGG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BstZI	CGGCCG	2 cut(s)	210, 231
BsuRI	GGCC	3 cut(s)	192, 212, 233
BtsIMutI	CAGTG	2 cut(s)	297, 492
Cac8I	GCNNGC	1 cut(s)	381
CciI	TCATGA	2 cut(s)	313, 325
CfoI	GCGC	2 cut(s)	205, 277
Cfr10I	RCCGGY	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	121, 238
CviAII	CATG	3 cut(s)	314, 326, 499
CviJI	RGCY	9 cut(s)	53, 170, 184, 192, 212, 233, 353, 386, 433
CviKI_1	RGCY	9 cut(s)	53, 170, 184, 192, 212, 233, 353, 386, 433
CviQI	GTAC	2 cut(s)	121, 238
DpnI	GATC	3 cut(s)	342, 444, 508
DpnII	GATC	3 cut(s)	340, 442, 506
EaeI	YGGCCR	3 cut(s)	190, 210, 231
EagI	CGGCCG	2 cut(s)	210, 231
Ecl136II	GAGCTC	1 cut(s)	184
EclXI	CGGCCG	2 cut(s)	210, 231
Eco24I	GRGCYC	1 cut(s)	186
Eco52I	CGGCCG	2 cut(s)	210, 231
Eco53kI	GAGCTC	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	3 cut(s)	317, 329, 502
FaiI	YATR	6 cut(s)	315, 327, 333, 438, 500, 504
FatI	CATG	3 cut(s)	313, 325, 498
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	106, 384
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	106, 384
FspBI	CTAG	2 cut(s)	222, 366
GlaI	GCGC	2 cut(s)	204, 276
GluI	GCNGC	2 cut(s)	106, 384
GsaI	CCCAGC	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	192, 212, 233
HapII	CCGG	3 cut(s)	189, 209, 281
HhaI	GCGC	2 cut(s)	205, 277
Hin1II	CATG	3 cut(s)	317, 329, 502
Hin6I	GCGC	2 cut(s)	203, 275
HinP1I	GCGC	2 cut(s)	203, 275
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	3 cut(s)	197, 284, 298
HpaII	CCGG	3 cut(s)	189, 209, 281
HphI	GGTGA	3 cut(s)	154, 178, 281
Hpy166II	GTNNAC	3 cut(s)	121, 238, 466
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	5 cut(s)	179, 281, 314, 326, 344
Hpy8I	GTNNAC	3 cut(s)	121, 238, 466
HpyAV	CCTTC	2 cut(s)	133, 498
HpyCH4III	ACNGT	3 cut(s)	86, 292, 496
HpyCH4V	TGCA	2 cut(s)	295, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 218
Hsp92II	CATG	3 cut(s)	317, 329, 502
HspAI	GCGC	2 cut(s)	203, 275
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	340, 442, 506
LmnI	GCTCC	2 cut(s)	181, 210
LpnPI	CCDG	9 cut(s)	151, 164, 202, 222, 294, 365, 370, 372, 468
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	2 cut(s)	222, 366
MaeIII	GTNAC	2 cut(s)	80, 368
MalI	GATC	3 cut(s)	342, 444, 508
MboI	GATC	3 cut(s)	340, 442, 506
MboII	GAAGA	2 cut(s)	314, 501
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	3 cut(s)	166, 265, 340
Mph1103I	ATGCAT	1 cut(s)	337
MroI	TCCGGA	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	1 cut(s)	517
MslI	CAYNNNNRTG	4 cut(s)	312, 324, 330, 497
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	3 cut(s)	189, 209, 281
MspR9I	CCNGG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	209, 218
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	3 cut(s)	340, 442, 506
NlaIII	CATG	3 cut(s)	317, 329, 502
NsiI	ATGCAT	1 cut(s)	337
PagI	TCATGA	2 cut(s)	313, 325
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	284, 298
PkrI	GCNGC	2 cut(s)	107, 385
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	122, 239
RsaNI	GTAC	2 cut(s)	121, 238
RseI	CAYNNNNRTG	4 cut(s)	312, 324, 330, 497
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	517
SatI	GCNGC	2 cut(s)	106, 384
Sau3AI	GATC	3 cut(s)	340, 442, 506
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	6 cut(s)	144, 186, 227, 351, 388, 435
SfaNI	GCATC	1 cut(s)	117
SmiMI	CAYNNNNRTG	4 cut(s)	312, 324, 330, 497
SpeI	ACTAGT	1 cut(s)	365
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	105, 201, 219
SspMI	CTAG	2 cut(s)	222, 366
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	86, 292, 496
TaqI	TCGA	2 cut(s)	287, 343
TasI	AATT	1 cut(s)	161
TatI	WGTACW	2 cut(s)	120, 237
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	284, 298
Tru1I	TTAA	1 cut(s)	517
Tru9I	TTAA	1 cut(s)	517
TscAI	CASTG	2 cut(s)	297, 499
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	5 cut(s)	17, 152, 253, 314, 330
TspRI	CASTG	2 cut(s)	297, 499
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	2 cut(s)	222, 366
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.