Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Forward (+)

7097581 .. 7098362

Gene Structure 782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G038200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAACAACAATTCCACCCAACTAAGCAATGGCCATGGCCGCCAAATTTCCAAGCCCAACAAAAAAAGCAAAACCAAGAAGCAGGGGATCAAAGTGGTTTACATCTCCAACCCAATGAAGGTGAGGACGAGTGCCTCAGAATTCAGGGCTCTGGTTCAAGAGCTCACTGGCCAAGACTCTGAGCTCCCGGACCCAGCTAGGTTTTTGGAGCACTCATCTGCAGAAGACAACAATTCGACGGCCCAGGTTGGTGGACATCATCATCATGATGCATTGGATCTAGTGGTGGCTGATGCTGCTTCTCCTCCTGCTCAAGAGCAGCCTGCTGAGAGTTCGAGCTCAAATGTGAACACCCAATATCCTGATGATGAGCTTTATGATGATCTTTTTGTGCCTGAAATGATGGATAGCTTTGGGGGGTTTTTGCCCTCCAGTGTCTTGTATGGATCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

152

Amino Acids

16.4

Weight (kDa)

5.08

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	4 cut(s)	95, 285, 441, 454
AcoI	YGGCCR	3 cut(s)	31, 37, 169
AcsI	RAATTY	2 cut(s)	45, 140
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	243
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	6 cut(s)	163, 184, 197, 339, 373, 411
AluI	AGCT	6 cut(s)	163, 184, 197, 339, 373, 411
Alw21I	GWGCWC	4 cut(s)	165, 186, 213, 341
AlwI	GGATC	4 cut(s)	95, 285, 441, 454
AoxI	GGCC	4 cut(s)	31, 37, 169, 240
ApeKI	GCWGC	2 cut(s)	296, 319
ApoI	RAATTY	2 cut(s)	45, 140
AspS9I	GGNCC	2 cut(s)	190, 241
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	2 cut(s)	33, 171
BamHI	GGATCC	1 cut(s)	446
BanII	GRGCYC	4 cut(s)	151, 165, 186, 341
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	4 cut(s)	165, 186, 213, 341
BbvI	GCAGC	2 cut(s)	283, 331
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	188
BfaI	CTAG	2 cut(s)	198, 281
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	3 cut(s)	40, 297, 320
BlsI	GCNGC	3 cut(s)	41, 298, 321
Bme1390I	CCNGG	2 cut(s)	188, 245
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	190, 241
BmiI	GGNNCC	2 cut(s)	192, 448
BmrFI	CCNGG	2 cut(s)	188, 245
BmsI	GCATC	2 cut(s)	259, 283
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	34, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	172, 432
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	34, 243
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	3 cut(s)	150, 171, 318
BseNI	ACTGG	2 cut(s)	172, 432
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	283, 331
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	4 cut(s)	33, 39, 171, 242
BsiHKAI	GWGCWC	4 cut(s)	165, 186, 213, 341
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	118
BsnI	GGCC	4 cut(s)	33, 39, 171, 242
Bsp1286I	GDGCHC	5 cut(s)	151, 165, 186, 213, 341
Bsp143I	GATC	4 cut(s)	87, 277, 382, 446
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	4 cut(s)	33, 39, 171, 242
BspCNI	CTCAG	3 cut(s)	149, 172, 319
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	192, 448
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	4 cut(s)	95, 285, 441, 454
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	172, 432
BssECI	CCNNGG	2 cut(s)	34, 243
BssMI	GATC	4 cut(s)	87, 277, 382, 446
BssT1I	CCWWGG	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	4 cut(s)	23, 136, 180, 327
BstDSI	CCRYGG	1 cut(s)	34
BstKTI	GATC	4 cut(s)	90, 280, 385, 449
BstMBI	GATC	4 cut(s)	87, 277, 382, 446
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 296
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	2 cut(s)	186, 243
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	283, 331
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	2 cut(s)	277, 446
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	2 cut(s)	277, 446
BsuRI	GGCC	4 cut(s)	33, 39, 171, 242
BtgI	CCRYGG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	165, 439
Cac8I	GCNNGC	1 cut(s)	324
CciI	TCATGA	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	190, 241
CviAII	CATG	2 cut(s)	35, 266
DdeI	CTNAG	4 cut(s)	23, 136, 180, 327
DpnI	GATC	4 cut(s)	89, 279, 384, 448
DpnII	GATC	4 cut(s)	87, 277, 382, 446
EaeI	YGGCCR	3 cut(s)	31, 37, 169
Ecl136II	GAGCTC	3 cut(s)	163, 184, 339
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	4 cut(s)	151, 165, 186, 341
Eco47I	GGWCC	1 cut(s)	190
Eco53kI	GAGCTC	3 cut(s)	163, 184, 339
EcoICRI	GAGCTC	3 cut(s)	163, 184, 339
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	4 cut(s)	151, 165, 186, 341
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	2 cut(s)	38, 269
FaiI	YATR	4 cut(s)	36, 267, 378, 444
FatI	CATG	2 cut(s)	34, 265
Fnu4HI	GCNGC	3 cut(s)	40, 297, 320
FriOI	GRGCYC	4 cut(s)	151, 165, 186, 341
Fsp4HI	GCNGC	3 cut(s)	40, 297, 320
FspBI	CTAG	2 cut(s)	198, 281
GluI	GCNGC	3 cut(s)	40, 297, 320
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	4 cut(s)	33, 39, 171, 242
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	2 cut(s)	38, 269
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	3 cut(s)	100, 254, 349
Hpy188I	TCNGA	2 cut(s)	139, 181
Hpy188III	TCNNGA	4 cut(s)	158, 266, 314, 362
Hpy8I	GTNNAC	3 cut(s)	100, 254, 349
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	221, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 296
HpyF3I	CTNAG	4 cut(s)	23, 136, 180, 327
Hsp92II	CATG	2 cut(s)	38, 269
Kzo9I	GATC	4 cut(s)	87, 277, 382, 446
LmnI	GCTCC	2 cut(s)	189, 208
Lsp1109I	GCAGC	2 cut(s)	283, 331
LweI	GCATC	2 cut(s)	259, 283
MaeI	CTAG	2 cut(s)	198, 281
MalI	GATC	4 cut(s)	89, 279, 384, 448
MboI	GATC	4 cut(s)	87, 277, 382, 446
MboII	GAAGA	1 cut(s)	236
MflI	RGATCY	2 cut(s)	277, 446
MhlI	GDGCHC	5 cut(s)	151, 165, 186, 213, 341
MlsI	TGGCCA	2 cut(s)	33, 171
MluCI	AATT	4 cut(s)	10, 45, 140, 232
MluNI	TGGCCA	2 cut(s)	33, 171
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	4 cut(s)	117, 145, 315, 439
Mox20I	TGGCCA	2 cut(s)	33, 171
Mph1103I	ATGCAT	1 cut(s)	274
MscI	TGGCCA	2 cut(s)	33, 171
MseI	TTAA	1 cut(s)	454
MslI	CAYNNNNRTG	2 cut(s)	264, 267
Msp20I	TGGCCA	2 cut(s)	33, 171
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	188, 245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	39, 296
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	4 cut(s)	87, 277, 382, 446
NlaIII	CATG	2 cut(s)	38, 269
NlaIV	GGNNCC	2 cut(s)	192, 448
NsiI	ATGCAT	1 cut(s)	274
PagI	TCATGA	1 cut(s)	265
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	3 cut(s)	41, 298, 321
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp124BI	GAGCTC	3 cut(s)	165, 186, 341
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	192, 448
PspPI	GGNCC	2 cut(s)	190, 241
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	277, 446
RseI	CAYNNNNRTG	2 cut(s)	264, 267
SacI	GAGCTC	3 cut(s)	165, 186, 341
SaqAI	TTAA	1 cut(s)	454
SatI	GCNGC	3 cut(s)	40, 297, 320
Sau3AI	GATC	4 cut(s)	87, 277, 382, 446
Sau96I	GGNCC	2 cut(s)	190, 241
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	188, 245
SduI	GDGCHC	5 cut(s)	151, 165, 186, 213, 341
SetI	ASST	9 cut(s)	123, 165, 186, 199, 203, 249, 341, 375, 413
SfaNI	GCATC	2 cut(s)	259, 283
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	2 cut(s)	264, 267
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	4 cut(s)	10, 45, 140, 232
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	2 cut(s)	198, 281
SstI	GAGCTC	3 cut(s)	165, 186, 341
StyD4I	CCNGG	2 cut(s)	186, 243
StyI	CCWWGG	1 cut(s)	34
TaqI	TCGA	2 cut(s)	236, 335
TasI	AATT	4 cut(s)	10, 45, 140, 232
TauI	GCSGC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TscAI	CASTG	2 cut(s)	172, 439
TseI	GCWGC	2 cut(s)	296, 319
TspDTI	ATGAA	2 cut(s)	17, 131
TspRI	CASTG	2 cut(s)	172, 439
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	2 cut(s)	45, 140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XspI	CTAG	2 cut(s)	198, 281
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.