Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8046126.1

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 200

Gene Structure 199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8046126.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 199 bp

atggatgatattaatagtaacctagttggtagtagttgtagcagtggacagatgaagcatcaaactcaaagtcaagcaaagacgagaagctccagctgcaaatccaagaagaagccgatcaaagtggtttacatatcaaacccgatgaagattacaacgagcgcctccgaattcagggctttggttcagcagctcaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

66

Amino Acids

7.22

Weight (kDa)

9.94

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	174
AluBI	AGCT	3 cut(s)	90, 96, 193
AluI	AGCT	3 cut(s)	90, 96, 193
ApeKI	GCWGC	2 cut(s)	96, 190
ApoI	RAATTY	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AseI	ATTAAT	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	2 cut(s)	97, 191
BlsI	GCNGC	2 cut(s)	98, 192
BmsI	GCATC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	117
BssMI	GATC	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	164
CviJI	RGCY	5 cut(s)	90, 96, 115, 179, 193
CviKI_1	RGCY	5 cut(s)	90, 96, 115, 179, 193
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	170
FaiI	YATR	1 cut(s)	134
Fnu4HI	GCNGC	2 cut(s)	97, 191
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	97, 191
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	97, 191
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	165
HhaI	GCGC	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	47, 130
Hpy188I	TCNGA	1 cut(s)	169
Hpy8I	GTNNAC	2 cut(s)	47, 130
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	2 cut(s)	106, 160
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	121, 160
MluCI	AATT	1 cut(s)	170
MnlI	CCTC	1 cut(s)	175
MseI	TTAA	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	96
NdeII	GATC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	98, 192
PshBI	ATTAAT	1 cut(s)	12
PvuII	CAGCTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	2 cut(s)	97, 191
Sau3AI	GATC	1 cut(s)	117
SetI	ASST	4 cut(s)	24, 92, 98, 195
SfaNI	GCATC	1 cut(s)	67
SgeI	CNNG	8 cut(s)	35, 86, 96, 105, 118, 154, 171, 187
Sse9I	AATT	1 cut(s)	170
SspMI	CTAG	1 cut(s)	23
TasI	AATT	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	2 cut(s)	96, 190
TspDTI	ATGAA	2 cut(s)	68, 161
TspRI	CASTG	1 cut(s)	49
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	170
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.