Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

21006638 .. 21008068

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGTCATCATCGTCGACTTTTCTCACCACGACAAGCTTAGACAAGAAAAAACCATCTCCGGTTTCAAGAAAATCACCAAAGCAAAAGAAGAAGACGACTTCGACGAATAAACCCATCAAAGTTCGTTACATCTCAAACCCCATGAGAGTTCAAACTTGTGCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTCACAGGCCAAGACGCCGTCGATCTTCAACCGGAGCCCATCTATTCCCCTTCCTCCGACGACCACAACCTTTCTCCACCGGCGGAGAATCTTGCGCCACGTGTTCTTCATCAGGAGCCGTTCGGTGAGAGAGACAGTGATTGTTATGAGCCGTTGAATGCGGAAGACATGTTTTTACCTGATCAGATGTCGGCAGGTTTTTCTGGGTTTTTCTCTAATGGGTTTTACAATGTCAATGACTTTGGAAGCATCGATTCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009814 GO:0009816 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0080090 GO:0098542 GO:0104004 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

151

Amino Acids

16.86

Weight (kDa)

5.39

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	45 - 70	6.3e-11	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	2 cut(s)	275, 353
AcvI	CACGTG	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	207
AflIII	ACRYGT	2 cut(s)	292, 360
AgsI	TTSAA	5 cut(s)	69, 155, 188, 221, 349
AluBI	AGCT	2 cut(s)	39, 181
AluI	AGCT	2 cut(s)	39, 181
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	318
AoxI	GGCC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	19, 69, 329
BanII	GRGCYC	2 cut(s)	183, 231
BbrPI	CACGTG	1 cut(s)	293
BbsI	GAAGAC	2 cut(s)	101, 363
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	3 cut(s)	64, 125, 239
BceAI	ACGGC	3 cut(s)	194, 295, 328
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	228, 309
BmsI	GCATC	1 cut(s)	450
BpiI	GAAGAC	2 cut(s)	101, 363
Bsa29I	ATCGAT	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	207
BsaWI	WCCGGW	2 cut(s)	61, 223
Bse118I	RCCGGY	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	444
BshFI	GGCC	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	62, 224, 272
BsmAI	GTCTC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	183, 231
Bsp143I	GATC	2 cut(s)	214, 373
BspACI	CCGC	2 cut(s)	275, 353
BspANI	GGCC	1 cut(s)	201
BspDI	ATCGAT	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	228, 309
BspMI	ACCTGC	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	271
BssMI	GATC	2 cut(s)	214, 373
BssNI	GRCGYC	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	293
BstDEI	CTNAG	2 cut(s)	40, 168
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	2 cut(s)	217, 376
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	2 cut(s)	214, 373
BstNSI	RCATGY	1 cut(s)	364
BstV2I	GAAGAC	2 cut(s)	101, 363
Bsu15I	ATCGAT	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	377
CfoI	GCGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	444
CseI	GACGC	1 cut(s)	215
CviAII	CATG	2 cut(s)	145, 361
CviJI	RGCY	6 cut(s)	39, 181, 201, 229, 310, 343
CviKI_1	RGCY	6 cut(s)	39, 181, 201, 229, 310, 343
DdeI	CTNAG	2 cut(s)	40, 168
DpnI	GATC	2 cut(s)	216, 375
DpnII	GATC	2 cut(s)	214, 373
EciI	GGCGGA	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	2 cut(s)	183, 231
Eco53kI	GAGCTC	1 cut(s)	181
Eco72I	CACGTG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	181
EcoT38I	GRGCYC	2 cut(s)	183, 231
FaeI	CATG	2 cut(s)	148, 364
FaiI	YATR	4 cut(s)	146, 339, 362, 452
FatI	CATG	2 cut(s)	144, 360
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	183, 231
GlaI	GCGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	3 cut(s)	62, 224, 272
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	148, 364
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	3 cut(s)	5, 280, 446
HpaII	CCGG	3 cut(s)	62, 224, 272
HphI	GGTGA	3 cut(s)	19, 69, 329
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	3 cut(s)	176, 250, 378
Hpy188III	TCNNGA	3 cut(s)	69, 188, 305
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	4 cut(s)	19, 109, 215, 254
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	292
HpyF3I	CTNAG	2 cut(s)	40, 168
HpySE526I	ACGT	1 cut(s)	292
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	148, 364
HspAI	GCGC	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	214, 373
LmnI	GCTCC	2 cut(s)	226, 307
LpnPI	CCDG	8 cut(s)	75, 183, 237, 285, 290, 372, 381, 384
LweI	GCATC	1 cut(s)	450
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	216, 375
MboI	GATC	2 cut(s)	214, 373
MboII	GAAGA	5 cut(s)	103, 106, 209, 290, 368
MhlI	GDGCHC	2 cut(s)	183, 231
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	1 cut(s)	256
MspI	CCGG	3 cut(s)	62, 224, 272
Mva1269I	GAATGC	1 cut(s)	355
NdeII	GATC	2 cut(s)	214, 373
NlaIII	CATG	2 cut(s)	148, 364
NlaIV	GGNNCC	2 cut(s)	228, 309
NspI	RCATGY	1 cut(s)	364
PciI	ACATGT	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	280, 446
PflFI	GACNNNGTC	1 cut(s)	209
PleI	GAGTC	1 cut(s)	13
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	293
PscI	ACATGT	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	183
PspCI	CACGTG	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	228, 309
PsyI	GACNNNGTC	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	183
SalI	GTCGAC	1 cut(s)	16
Sau3AI	GATC	2 cut(s)	214, 373
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	183, 231
SetI	ASST	6 cut(s)	41, 183, 264, 295, 373, 391
SfaNI	GCATC	1 cut(s)	450
SgrAI	CRCCGGYG	1 cut(s)	271
SsiI	CCGC	2 cut(s)	275, 353
SstI	GAGCTC	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	4 cut(s)	17, 104, 213, 444
TfiI	GAWTC	2 cut(s)	280, 446
TscAI	CASTG	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	209
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.