Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

19287384 .. 19287833

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAAGCTGATACCAATAGTAACCTGCTAGTTGGTAGTAGTTGTAGCAGCGGACAGATGAAGCATCAGCCTAAGACCAAATCAAAGACTTCGAGAAGCTCCGGCGGCAATAAGTCCAATAAGAAGAAGCCAATCAAAGTGGTTTACATATCAAACCCGATGAAGGTTACAGCGAGCGCCTCGGAATTCAGGGCTTTGGTTCAGCAACTCACCGGCCAAGATGCCGACGACCTGCCGCCAGATCTCCACCCTACTTCTAGCAATCCAATGGTAGAGATAAGCAGCGGCCGCAGGCGGCATCCTGAAATCTCAGACTCAAGTACCACCTGCACCCAATATTATGATGATCACGATGAGCCTCACCAGCACTTGTACGACGACGTCGATGGTCTTTTTCTGCCTGAAATGCTTGACAGCTTTGTGCCTGCAGCCATCAAGGGTTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

150

Amino Acids

16.35

Weight (kDa)

6.03

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	50 - 76	2.7e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	335
AatII	GACGTC	1 cut(s)	384
Acc36I	ACCTGC	3 cut(s)	33, 240, 335
AciI	CCGC	6 cut(s)	51, 105, 236, 285, 289, 295
AcoI	YGGCCR	2 cut(s)	214, 286
AcsI	RAATTY	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	2 cut(s)	322, 374
AfiI	CCNNNNNNNGG	1 cut(s)	163
AluBI	AGCT	3 cut(s)	8, 99, 417
AluI	AGCT	3 cut(s)	8, 99, 417
AoxI	GGCC	2 cut(s)	214, 286
ApeKI	GCWGC	3 cut(s)	48, 282, 428
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	202, 353
BaeI	ACNNNNGTAYC	2 cut(s)	304, 337
BbvI	GCAGC	3 cut(s)	60, 294, 440
BccI	CCATC	2 cut(s)	380, 440
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	2 cut(s)	29, 258
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	180
BfuAI	ACCTGC	3 cut(s)	33, 240, 335
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	8 cut(s)	49, 106, 236, 283, 286, 289, 296, 429
BlsI	GCNGC	8 cut(s)	50, 107, 237, 284, 287, 290, 297, 430
BmsI	GCATC	3 cut(s)	73, 211, 307
BpuEI	CTTGAG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	324
BseX3I	CGGCCG	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	60, 294, 440
BsgI	GTGCAG	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	216, 288
BsiEI	CGRYCG	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	102, 213
BslI	CCNNNNNNNGG	1 cut(s)	163
BsnI	GGCC	2 cut(s)	216, 288
Bsp143I	GATC	2 cut(s)	241, 346
BspACI	CCGC	6 cut(s)	51, 105, 236, 285, 289, 295
BspANI	GGCC	2 cut(s)	216, 288
BspCNI	CTCAG	1 cut(s)	323
BspMAI	CTGCAG	1 cut(s)	430
BspMI	ACCTGC	3 cut(s)	33, 240, 335
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	241, 346
BssNI	GRCGYC	1 cut(s)	381
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	3 cut(s)	175, 293, 426
BstDEI	CTNAG	2 cut(s)	72, 310
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	244, 349
BstMBI	GATC	2 cut(s)	241, 346
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 288, 364, 406
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	60, 294, 440
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BstZI	CGGCCG	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	216, 288
BtsCI	GGATG	1 cut(s)	298
BveI	ACCTGC	3 cut(s)	33, 240, 335
Cac8I	GCNNGC	3 cut(s)	175, 293, 426
CciNI	GCGGCCGC	1 cut(s)	286
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	321, 373
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviQI	GTAC	2 cut(s)	321, 373
DdeI	CTNAG	2 cut(s)	72, 310
DpnI	GATC	2 cut(s)	243, 348
DpnII	GATC	2 cut(s)	241, 346
EaeI	YGGCCR	2 cut(s)	214, 286
EagI	CGGCCG	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	286
Eco52I	CGGCCG	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	185
FaiI	YATR	2 cut(s)	149, 342
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	8 cut(s)	49, 106, 236, 283, 286, 289, 296, 429
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	8 cut(s)	49, 106, 236, 283, 286, 289, 296, 429
FspBI	CTAG	2 cut(s)	29, 258
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	8 cut(s)	49, 106, 236, 283, 286, 289, 296, 429
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	216, 288
HapII	CCGG	2 cut(s)	102, 213
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	381
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	2 cut(s)	102, 213
HphI	GGTGA	2 cut(s)	202, 353
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	184, 313
Hpy188III	TCNNGA	3 cut(s)	93, 302, 350
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	4 cut(s)	230, 380, 383, 386
HpyAV	CCTTC	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	2 cut(s)	330, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 288, 364, 406
HpyF3I	CTNAG	2 cut(s)	72, 310
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	381
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	241, 346
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	3 cut(s)	60, 294, 440
LweI	GCATC	3 cut(s)	73, 211, 307
MaeI	CTAG	2 cut(s)	29, 258
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	2 cut(s)	20, 166
MalI	GATC	2 cut(s)	243, 348
MboI	GATC	2 cut(s)	241, 346
MboII	GAAGA	1 cut(s)	136
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	2 cut(s)	190, 369
MspA1I	CMGCKG	2 cut(s)	51, 285
MspI	CCGG	2 cut(s)	102, 213
MwoI	GCNNNNNNNGC	4 cut(s)	105, 288, 364, 406
NdeII	GATC	2 cut(s)	241, 346
NotI	GCGGCCGC	1 cut(s)	286
PaqCI	CACCTGC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PflFI	GACNNNGTC	1 cut(s)	380
PkrI	GCNGC	8 cut(s)	50, 107, 237, 284, 287, 290, 297, 430
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	380
RsaI	GTAC	2 cut(s)	322, 374
RsaNI	GTAC	2 cut(s)	321, 373
SatI	GCNGC	8 cut(s)	49, 106, 236, 283, 286, 289, 296, 429
Sau3AI	GATC	2 cut(s)	241, 346
SchI	GAGTC	1 cut(s)	308
SetI	ASST	8 cut(s)	10, 27, 101, 168, 234, 329, 384, 419
SfaNI	GCATC	3 cut(s)	73, 211, 307
SfcI	CTRYAG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	6 cut(s)	51, 105, 236, 285, 289, 295
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	2 cut(s)	29, 258
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	92, 384
TasI	AATT	1 cut(s)	185
TauI	GCSGC	5 cut(s)	108, 238, 288, 291, 298
TseI	GCWGC	3 cut(s)	48, 282, 428
TspDTI	ATGAA	2 cut(s)	74, 176
Tth111I	GACNNNGTC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	185
XspI	CTAG	2 cut(s)	29, 258
ZraI	GACGTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.