Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003250.1

Orthogroup ID

OG0005038

Physical Location & Seq

Genomic Coordinates Reverse (-)

18327 .. 18752

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003250.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggatgatattaatagtaacctagttggtagtagttgtagcagtggacagatgaagcatcaaactcaaagtcaagcaaagacgagaagctccagctgcaaatccaagaagaagccgatcaaagtggtttacatatcaaacccgatgaagattacaacgagcgcctccgaattcagggctttggttcagcagctcaccggtcaagatgctgacgacctgccagatctccatcgtactagcaacaaccacctcatcacaccaatggccagcagcaggcggcagccagaaagttcaaactcaaataccaccacccaatattatgatgatcatgatgagcatcaccagcacttgtatgacgacgtcgatggtctttttgtgcctgaaatgcttgatagctttgtgcctgccgtcaagggttttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

141

Amino Acids

15.74

Weight (kDa)

6.12

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41180 AT3G56710 AT3G56710
fragaria_vesca	FvH4_6g25410 FvH4_7g03520
malus_domestica	MD14G1088500.v1.1
prunus_persica	Prupe.2G041200_v2.0.a1 Prupe.7G038200_v2.0.a1
pyrus_communis	pycom07g03430
rosa_chinensis	RchiOBHm_Chr1g0325821 RchiOBHm_Chr2g0125651
rosa_laevigata	RLG00000018874 RLG00000030100
rosa_multiflora	Rmu_co8046126.1_g000001 Rmu_sc0003250.1_g000006 Rmu_sc0006395.1_g000002 Rmu_sc0013657.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117890 Rroxscaffold_4G00324250
rosa_rugosa	Rorug01G0055300 Rorug02G0258200
rosa_samantha	Rh1AG071700 Rh1BG058600 Rh1CG071000 Rh1DG075800 Rh2AG316800 Rh2BG324600 Rh2CG306700
rosa_wichuraiana	Rw1G005830 Rw2G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	363
Acc36I	ACCTGC	1 cut(s)	225
AciI	CCGC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	174, 273
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	294
AluBI	AGCT	4 cut(s)	90, 96, 193, 396
AluI	AGCT	4 cut(s)	90, 96, 193, 396
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	4 cut(s)	96, 190, 270, 280
ApoI	RAATTY	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AseI	ATTAAT	1 cut(s)	12
AsiGI	ACCGGT	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	187, 332
BalI	TGGCCA	1 cut(s)	266
BbvI	GCAGC	4 cut(s)	83, 202, 282, 292
BccI	CCATC	2 cut(s)	237, 359
BceAI	ACGGC	1 cut(s)	392
BclI	TGATCA	1 cut(s)	325
BfaI	CTAG	2 cut(s)	23, 237
BfoI	RGCGCY	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	5 cut(s)	97, 191, 271, 278, 281
BlsI	GCNGC	5 cut(s)	98, 192, 272, 279, 282
BmsI	GCATC	3 cut(s)	67, 196, 346
BpmI	CTGGAG	1 cut(s)	76
BsaBI	GATNNNNATC	2 cut(s)	228, 336
BsaHI	GRCGYC	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 273
Bse118I	RCCGGY	1 cut(s)	197
Bse8I	GATNNNNATC	2 cut(s)	228, 336
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	2 cut(s)	228, 336
BseLI	CCNNNNNNNGG	2 cut(s)	174, 273
BseXI	GCAGC	4 cut(s)	83, 202, 282, 292
BshFI	GGCC	1 cut(s)	266
BshTI	ACCGGT	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	174, 273
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	117, 223, 325
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	197
BssMI	GATC	3 cut(s)	117, 223, 325
BssNI	GRCGYC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	268, 275, 405
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	120, 226, 328
BstMBI	GATC	3 cut(s)	117, 223, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 343, 385
BstV1I	GCAGC	4 cut(s)	83, 202, 282, 292
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	268, 275, 405
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	234
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	8 cut(s)	90, 96, 115, 179, 193, 266, 283, 396
CviKI_1	RGCY	8 cut(s)	90, 96, 115, 179, 193, 266, 283, 396
CviQI	GTAC	1 cut(s)	234
DpnI	GATC	3 cut(s)	119, 225, 327
DpnII	GATC	3 cut(s)	117, 223, 325
EaeI	YGGCCR	1 cut(s)	264
EcoRI	GAATTC	1 cut(s)	170
FaeI	CATG	1 cut(s)	332
FaiI	YATR	4 cut(s)	134, 321, 330, 354
FatI	CATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	5 cut(s)	97, 191, 271, 278, 281
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	97, 191, 271, 278, 281
FspBI	CTAG	2 cut(s)	23, 237
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	5 cut(s)	97, 191, 271, 278, 281
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	2 cut(s)	187, 332
Hpy166II	GTNNAC	2 cut(s)	47, 130
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	203, 329
Hpy8I	GTNNAC	2 cut(s)	47, 130
Hpy99I	CGWCG	2 cut(s)	362, 365
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 343, 385
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	117, 223, 325
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	4 cut(s)	83, 202, 282, 292
LweI	GCATC	3 cut(s)	67, 196, 346
MaeI	CTAG	2 cut(s)	23, 237
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	3 cut(s)	119, 225, 327
MboI	GATC	3 cut(s)	117, 223, 325
MboII	GAAGA	2 cut(s)	121, 160
MflI	RGATCY	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	2 cut(s)	175, 260
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	2 cut(s)	260, 351
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	96, 343, 385
NdeII	GATC	3 cut(s)	117, 223, 325
NlaIII	CATG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	328
PflFI	GACNNNGTC	1 cut(s)	359
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	98, 192, 272, 279, 282
PshBI	ATTAAT	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	2 cut(s)	260, 351
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	5 cut(s)	97, 191, 271, 278, 281
Sau3AI	GATC	3 cut(s)	117, 223, 325
SetI	ASST	8 cut(s)	24, 92, 98, 195, 219, 252, 363, 398
SfaNI	GCATC	3 cut(s)	67, 196, 346
SmiMI	CAYNNNNRTG	2 cut(s)	260, 351
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	277
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	23, 237
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	1 cut(s)	363
TasI	AATT	1 cut(s)	170
TauI	GCSGC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	4 cut(s)	96, 190, 270, 280
TspDTI	ATGAA	2 cut(s)	68, 161
TspRI	CASTG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	359
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	170
XspI	CTAG	2 cut(s)	23, 237
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.