AT2G41860

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
17467282 .. 17470157
2876 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41860.1

Sequence Viewer

Length: 1593 bp
ATGGGAAATTGTTGTGGAACGGCTGGATCGTTGATTCAAGATAAGCAGAAGAAAGGTTTTAAATTGCCAAATCCTTTCTCAAACGAGTACGGCAACCACCACGATGGCCTTAAGCTTATCGTGTTGAAGGAACCAACGGGTCATGAGATCAAGCAGAAATATAAATTAGGTCGTGAGTTAGGTCGAGGAGAGTTCGGTGTGACGTATCTGTGCACCGAGATCGAGACCGGAGAGATTTTCGCATGCAAATCAATCTTAAAGAAGAAGCTGAAAACGTCGATTGATATAGAGGACGTTAAGAGAGAAGTTGAGATCATGAGGCAAATGCCTGAACATCCTAATATTGTTACTTTGAAAGAGACTTATGAGGATGATAAAGCTGTGCATTTGGTTATGGAGCTTTGTGAAGGCGGTGAGCTTTTCGATAGGATTGTTGCTAGAGGGCATTATACGGAGAGAGCTGCTGCTTCGGTTATTAAAACGATCATCGAGGTTGTTCAGATGTGTCATAAGCATGGAGTAATGCACAGAGATTTAAAACCTGAGAACTTCTTGTTTGCAAACAAGAAGGAAACTGCATCTTTGAAGGCTATTGATTTTGGTCTCTCTGTTTTCTTTAAACCAGGCGAGAGATTTAACGAAATTGTTGGGAGTCCTTACTACATGGCTCCTGAGGTATTAAGGAGGAGTTATGGACAAGAAATTGACATTTGGAGCGCAGGAGTGATTCTTTACATATTGCTCTGTGGTGTTCCACCTTTTTGGGCAGAAACCGAACATGGAGTCGCAAAAGCAATTCTTAAATCTGTAATTGACTTTAAAAGAGACCCCTGGCCTAAAGTTTCTGATAATGCAAAAGATCTGATCAAAAAGATGCTTCATCCTGATCCAAGGCGTCGTCTAACTGCTCAACAAGTGCTTGATCATCCGTGGATACAGAATGGTAAGAATGCTTCCAATGTATCATTGGGTGAAACCGTAAGAGCAAGGCTTAAGCAATTCTCTGTTATGAACAAGCTCAAGAAAAGGGCACTCAGGGTTATCGCTGAGCATCTATCGGTTGAAGAAACATCTTGCATAAAAGAAAGATTCCAAGTAATGGATACAAGCAATAGAGGAAAGATTACTATCACCGAGCTAGGAATCGGATTGCAGAAACTCGGGATTGTTGTTCCTCAAGATGACATTCAAATATTGATGGACGCGGGAGATGTTGATAAAGATGGATATTTAGACGTCAATGAATTTGTAGCCATATCGGTACACATCAGGAAGTTAGGCAACGACGAGCACTTAAAGAAAGCTTTTACGTTCTTTGACAAAAACAAGAGTGGTTATATCGAAATAGAGGAGTTAAGAGATGCTTTGGCAGATGATGTTGACACTACTAGTGAAGAAGTTGTTGAAGCCATTATTCTTGATGTCGATACCAATAAGGATGGGAAAATAAGTTACGACGAATTTGCAACGATGATGAAAACGGGAACGGATTGGAGAAAAGCTTCGAGGCAGTACTCGAGGGACCTGTTTAAGTGTCTTAGTCTTAAGCTCATGCAAGATGGGTCCTTGCAGTCTAATGGAGATACAAAGTAG

Protein Analysis

530

Amino Acids

60.05

Weight (kDa)

6.75

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 54 - 312 2.1e-81 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 55 - 307 9.7e-27 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 128 - 211 5.3e-06 ABC1 atypical kinase-like domain
EF-hand_7 PF13499 360 - 418 6.1e-10 EF-hand domain pair
EF-hand_7 PF13499 430 - 493 2.8e-16 EF-hand domain pair
EF-hand_1 PF00036 432 - 457 1.4e-06 EF hand domain
EF-hand_6 PF13405 432 - 457 4.4e-06 EF-hand domain
EF-hand_1 PF00036 468 - 494 1.4e-06 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1239
AccB7I CCANNNNNTGG 1 cut(s) 1099
AccII CGCG 1 cut(s) 1205
AciI CCGC 2 cut(s) 411, 1205
AclWI GGATC 2 cut(s) 34, 881
AcsI RAATTY 2 cut(s) 1244, 1460
AcyI GRCGYC 2 cut(s) 895, 1236
AfaI GTAC 3 cut(s) 89, 1263, 1514
AfiI CCNNNNNNNGG 1 cut(s) 1099
AflII CTTAAG 3 cut(s) 110, 992, 1544
AgsI TTSAA 7 cut(s) 38, 127, 355, 586, 1064, 1190, 1406
AhlI ACTAGT 1 cut(s) 1388
AjnI CCWGG 2 cut(s) 622, 830
Alw21I GWGCWC 2 cut(s) 215, 1293
Alw26I GTCTC 4 cut(s) 218, 353, 608, 819
Alw44I GTGCAC 1 cut(s) 211
AlwI GGATC 2 cut(s) 34, 881
Ama87I CYCGRG 2 cut(s) 1160, 1516
AoxI GGCC 2 cut(s) 106, 833
ApaLI GTGCAC 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 461, 464
ApoI RAATTY 2 cut(s) 1244, 1460
ArsI GACNNNNNNTTYG 2 cut(s) 768, 800
Asp700I GAANNNNTTC 1 cut(s) 1501
AspLEI GCGC 1 cut(s) 719
AspS9I GGNCC 2 cut(s) 1522, 1563
AsuHPI GGTGA 3 cut(s) 425, 983, 1123
AvaI CYCGRG 2 cut(s) 1160, 1516
AvaII GGWCC 2 cut(s) 1522, 1563
AxyI CCTNAGG 1 cut(s) 672
BaeGI GKGCMC 2 cut(s) 215, 1033
BarI GAAGNNNNNNTAC 2 cut(s) 937, 969
Bbv12I GWGCWC 2 cut(s) 215, 1293
BbvI GCAGC 2 cut(s) 448, 451
BccI CCATC 5 cut(s) 98, 1192, 1217, 1433, 1553
BceAI ACGGC 2 cut(s) 36, 106
BcgI CGANNNNNNTGC 4 cut(s) 202, 236, 1445, 1479
BciT130I CCWGG 2 cut(s) 624, 832
BciVI GTATCC 2 cut(s) 927, 1096
BclI TGATCA 2 cut(s) 864, 922
BcoDI GTCTC 4 cut(s) 218, 353, 608, 819
BcuI ACTAGT 1 cut(s) 1388
BfaI CTAG 3 cut(s) 438, 1139, 1389
BfrI CTTAAG 3 cut(s) 110, 992, 1544
BfuI GTATCC 2 cut(s) 927, 1096
BglII AGATCT 1 cut(s) 859
BisI GCNGC 2 cut(s) 462, 465
BlpI GCTNAGC 1 cut(s) 1047
BlsI GCNGC 2 cut(s) 463, 466
BmcAI AGTACT 1 cut(s) 1514
Bme1390I CCNGG 2 cut(s) 624, 832
Bme18I GGWCC 2 cut(s) 1522, 1563
BmeT110I CYCGRG 2 cut(s) 1160, 1516
BmgT120I GGNCC 2 cut(s) 1522, 1563
BmiI GGNNCC 4 cut(s) 132, 669, 1523, 1564
BmrFI CCNGG 2 cut(s) 624, 832
BmsI GCATC 4 cut(s) 587, 864, 1060, 1351
Bpu1102I GCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 2 cut(s) 1004, 1161
BsaBI GATNNNNATC 1 cut(s) 1127
BsaHI GRCGYC 2 cut(s) 895, 1236
BsaI GGTCTC 3 cut(s) 218, 608, 819
BsaJI CCNNGG 3 cut(s) 830, 890, 929
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 1099
Bse21I CCTNAGG 1 cut(s) 672
Bse8I GATNNNNATC 1 cut(s) 1127
BseBI CCWGG 2 cut(s) 624, 832
BseDI CCNNGG 3 cut(s) 830, 890, 929
BseGI GGATG 5 cut(s) 334, 376, 880, 925, 1444
BseJI GATNNNNATC 1 cut(s) 1127
BseLI CCNNNNNNNGG 1 cut(s) 1099
BseMII CTCAG 4 cut(s) 534, 663, 1038, 1048
BseRI GAGGAG 3 cut(s) 201, 700, 1364
BseSI GKGCMC 2 cut(s) 215, 1033
BseXI GCAGC 2 cut(s) 448, 451
Bsh1236I CGCG 1 cut(s) 1205
BshFI GGCC 2 cut(s) 108, 835
BsiHKAI GWGCWC 2 cut(s) 215, 1293
BsiHKCI CYCGRG 2 cut(s) 1160, 1516
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 1535
BslI CCNNNNNNNGG 1 cut(s) 1099
BsmAI GTCTC 4 cut(s) 218, 353, 608, 819
BsmFI GGGAC 1 cut(s) 1535
BsmI GAATGC 1 cut(s) 955
BsnI GGCC 2 cut(s) 108, 835
Bso31I GGTCTC 3 cut(s) 218, 608, 819
BsoBI CYCGRG 2 cut(s) 1160, 1516
Bsp1286I GDGCHC 3 cut(s) 215, 1033, 1293
Bsp143I GATC 9 cut(s) 26, 147, 219, 312, 483, 859, 864, 886, 922
Bsp1720I GCTNAGC 1 cut(s) 1047
BspACI CCGC 2 cut(s) 411, 1205
BspANI GGCC 2 cut(s) 108, 835
BspCNI CTCAG 4 cut(s) 535, 664, 1039, 1047
BspFNI CGCG 1 cut(s) 1205
BspHI TCATGA 2 cut(s) 142, 315
BspLI GGNNCC 4 cut(s) 132, 669, 1523, 1564
BspPI GGATC 2 cut(s) 34, 881
BspTI CTTAAG 3 cut(s) 110, 992, 1544
BspTNI GGTCTC 3 cut(s) 218, 608, 819
BssECI CCNNGG 3 cut(s) 830, 890, 929
BssMI GATC 9 cut(s) 26, 147, 219, 312, 483, 859, 864, 886, 922
BssNI GRCGYC 2 cut(s) 895, 1236
BssT1I CCWWGG 1 cut(s) 890
Bst2UI CCWGG 2 cut(s) 624, 832
Bst4CI ACNGT 1 cut(s) 979
BstACI GRCGYC 2 cut(s) 895, 1236
BstAFI CTTAAG 3 cut(s) 110, 992, 1544
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 5 cut(s) 543, 672, 1034, 1047, 1538
BstDSI CCRYGG 1 cut(s) 929
BstF5I GGATG 5 cut(s) 334, 376, 880, 925, 1444
BstFNI CGCG 1 cut(s) 1205
BstHHI GCGC 1 cut(s) 719
BstKTI GATC 9 cut(s) 29, 150, 222, 315, 486, 862, 867, 889, 925
BstMAI GTCTC 4 cut(s) 218, 353, 608, 819
BstMBI GATC 9 cut(s) 26, 147, 219, 312, 483, 859, 864, 886, 922
BstNI CCWGG 2 cut(s) 624, 832
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 622, 830
BstSLI GKGCMC 2 cut(s) 215, 1033
BstUI CGCG 1 cut(s) 1205
BstV1I GCAGC 2 cut(s) 448, 451
BstX2I RGATCY 1 cut(s) 859
BstXI CCANNNNNNTGG 2 cut(s) 104, 762
BstYI RGATCY 1 cut(s) 859
Bsu36I CCTNAGG 1 cut(s) 672
BsuI GTATCC 2 cut(s) 927, 1096
BsuRI GGCC 2 cut(s) 108, 835
BtgI CCRYGG 1 cut(s) 929
BtsCI GGATG 5 cut(s) 334, 376, 880, 925, 1444
Cac8I GCNNGC 1 cut(s) 244
CciI TCATGA 2 cut(s) 142, 315
CfoI GCGC 1 cut(s) 719
Cfr13I GGNCC 2 cut(s) 1522, 1563
CseI GACGC 2 cut(s) 884, 1211
Csp6I GTAC 3 cut(s) 88, 1262, 1513
CviAII CATG 7 cut(s) 143, 243, 316, 515, 664, 779, 1552
CviQI GTAC 3 cut(s) 88, 1262, 1513
DdeI CTNAG 5 cut(s) 543, 672, 1034, 1047, 1538
DpnI GATC 9 cut(s) 28, 149, 221, 314, 485, 861, 866, 888, 924
DpnII GATC 9 cut(s) 26, 147, 219, 312, 483, 859, 864, 886, 922
DraI TTTAAA 4 cut(s) 61, 537, 619, 820
Eco130I CCWWGG 1 cut(s) 890
Eco31I GGTCTC 3 cut(s) 218, 608, 819
Eco47I GGWCC 2 cut(s) 1522, 1563
Eco81I CCTNAGG 1 cut(s) 672
Eco88I CYCGRG 2 cut(s) 1160, 1516
EcoO109I RGGNCCY 2 cut(s) 1522, 1563
EcoRII CCWGG 2 cut(s) 622, 830
EcoT14I CCWWGG 1 cut(s) 890
ErhI CCWWGG 1 cut(s) 890
FaeI CATG 7 cut(s) 146, 246, 319, 518, 667, 782, 1555
FalI AAGNNNNNCTT 4 cut(s) 783, 815, 1348, 1380
FaqI GGGAC 1 cut(s) 1535
FatI CATG 7 cut(s) 142, 242, 315, 514, 663, 778, 1551
FauI CCCGC 1 cut(s) 1198
FbaI TGATCA 2 cut(s) 864, 922
Fnu4HI GCNGC 2 cut(s) 462, 465
FokI GGATG 5 cut(s) 321, 383, 867, 912, 1451
Fsp4HI GCNGC 2 cut(s) 462, 465
FspBI CTAG 3 cut(s) 438, 1139, 1389
GlaI GCGC 1 cut(s) 718
GluI GCNGC 2 cut(s) 462, 465
HaeIII GGCC 2 cut(s) 108, 835
HapII CCGG 1 cut(s) 228
HgaI GACGC 2 cut(s) 884, 1211
HhaI GCGC 1 cut(s) 719
Hin1I GRCGYC 2 cut(s) 895, 1236
Hin1II CATG 7 cut(s) 146, 246, 319, 518, 667, 782, 1555
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HincII GTYRAC 1 cut(s) 1381
HindII GTYRAC 1 cut(s) 1381
HindIII AAGCTT 3 cut(s) 113, 1302, 1500
HinfI GANTC 6 cut(s) 34, 652, 727, 783, 1089, 1143
HpaII CCGG 1 cut(s) 228
HphI GGTGA 3 cut(s) 425, 983, 1123
Hpy166II GTNNAC 3 cut(s) 213, 1264, 1381
Hpy188I TCNGA 4 cut(s) 501, 847, 864, 1148
Hpy8I GTNNAC 3 cut(s) 213, 1264, 1381
Hpy99I CGWCG 4 cut(s) 280, 900, 1289, 1460
HpyAV CCTTC 4 cut(s) 121, 401, 562, 580
HpyCH4III ACNGT 1 cut(s) 979
HpyCH4IV ACGT 5 cut(s) 203, 275, 294, 1236, 1310
HpyF3I CTNAG 5 cut(s) 543, 672, 1034, 1047, 1538
HpySE526I ACGT 5 cut(s) 203, 275, 294, 1236, 1310
Hsp92I GRCGYC 2 cut(s) 895, 1236
Hsp92II CATG 7 cut(s) 146, 246, 319, 518, 667, 782, 1555
HspAI GCGC 1 cut(s) 717
Ksp22I TGATCA 2 cut(s) 864, 922
Kzo9I GATC 9 cut(s) 26, 147, 219, 312, 483, 859, 864, 886, 922
LmnI GCTCC 3 cut(s) 397, 673, 714
Lsp1109I GCAGC 2 cut(s) 448, 451
LweI GCATC 4 cut(s) 587, 864, 1060, 1351
MaeI CTAG 3 cut(s) 438, 1139, 1389
MaeII ACGT 5 cut(s) 203, 275, 294, 1236, 1310
MaeIII GTNAC 3 cut(s) 199, 346, 1451
MalI GATC 9 cut(s) 28, 149, 221, 314, 485, 861, 866, 888, 924
MboI GATC 9 cut(s) 26, 147, 219, 312, 483, 859, 864, 886, 922
MboII GAAGA 4 cut(s) 61, 274, 1076, 1406
MflI RGATCY 1 cut(s) 859
MhlI GDGCHC 3 cut(s) 215, 1033, 1293
MlyI GAGTC 2 cut(s) 661, 792
MroXI GAANNNNTTC 1 cut(s) 1501
MslI CAYNNNNRTG 2 cut(s) 102, 513
MspCI CTTAAG 3 cut(s) 110, 992, 1544
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 624, 832
Mva1269I GAATGC 1 cut(s) 955
MvaI CCWGG 2 cut(s) 624, 832
MvnI CGCG 1 cut(s) 1205
NdeII GATC 9 cut(s) 26, 147, 219, 312, 483, 859, 864, 886, 922
NlaIII CATG 7 cut(s) 146, 246, 319, 518, 667, 782, 1555
NlaIV GGNNCC 4 cut(s) 132, 669, 1523, 1564
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 246
PaeI GCATGC 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 1516
PagI TCATGA 2 cut(s) 142, 315
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PctI GAATGC 1 cut(s) 955
PdmI GAANNNNTTC 1 cut(s) 1501
PfeI GAWTC 4 cut(s) 34, 727, 1089, 1143
PflMI CCANNNNNTGG 1 cut(s) 1099
PkrI GCNGC 2 cut(s) 463, 466
PleI GAGTC 2 cut(s) 660, 791
PpsI GAGTC 2 cut(s) 660, 791
PpuMI RGGWCCY 2 cut(s) 1522, 1563
Psp5II RGGWCCY 2 cut(s) 1522, 1563
Psp6I CCWGG 2 cut(s) 622, 830
PspGI CCWGG 2 cut(s) 622, 830
PspN4I GGNNCC 4 cut(s) 132, 669, 1523, 1564
PspPI GGNCC 2 cut(s) 1522, 1563
PspPPI RGGWCCY 2 cut(s) 1522, 1563
PspXI VCTCGAGB 1 cut(s) 1516
PsuI RGATCY 1 cut(s) 859
RsaI GTAC 3 cut(s) 89, 1263, 1514
RsaNI GTAC 3 cut(s) 88, 1262, 1513
RseI CAYNNNNRTG 2 cut(s) 102, 513
SatI GCNGC 2 cut(s) 462, 465
Sau3AI GATC 9 cut(s) 26, 147, 219, 312, 483, 859, 864, 886, 922
Sau96I GGNCC 2 cut(s) 1522, 1563
ScaI AGTACT 1 cut(s) 1514
SchI GAGTC 2 cut(s) 661, 792
ScrFI CCNGG 2 cut(s) 624, 832
SduI GDGCHC 3 cut(s) 215, 1033, 1293
SfaNI GCATC 4 cut(s) 587, 864, 1060, 1351
Sfr274I CTCGAG 1 cut(s) 1516
SinI GGWCC 2 cut(s) 1522, 1563
SlaI CTCGAG 1 cut(s) 1516
SmiMI CAYNNNNRTG 2 cut(s) 102, 513
SmlI CTYRAG 6 cut(s) 110, 992, 1019, 1176, 1516, 1544
SmoI CTYRAG 6 cut(s) 110, 992, 1019, 1176, 1516, 1544
SpeI ACTAGT 1 cut(s) 1388
SphI GCATGC 1 cut(s) 246
SsiI CCGC 2 cut(s) 411, 1205
SspI AATATT 2 cut(s) 343, 1194
SspMI CTAG 3 cut(s) 438, 1139, 1389
StyD4I CCNGG 2 cut(s) 622, 830
StyI CCWWGG 1 cut(s) 890
TaaI ACNGT 1 cut(s) 979
TaiI ACGT 5 cut(s) 206, 278, 297, 1239, 1313
TaqI TCGA 9 cut(s) 184, 222, 278, 423, 489, 1341, 1425, 1505, 1517
TatI WGTACW 1 cut(s) 1512
TfiI GAWTC 4 cut(s) 34, 727, 1089, 1143
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 2 cut(s) 461, 464
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 4 cut(s) 869, 1025, 1257, 1490
TspGWI ACGGA 3 cut(s) 467, 918, 1502
Van91I CCANNNNNTGG 1 cut(s) 1099
Vha464I CTTAAG 3 cut(s) 110, 992, 1544
VneI GTGCAC 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 1522, 1563
XapI RAATTY 2 cut(s) 1244, 1460
XceI RCATGY 1 cut(s) 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 964
XhoI CTCGAG 1 cut(s) 1516
XmnI GAANNNNTTC 1 cut(s) 1501
XspI CTAG 3 cut(s) 438, 1139, 1389
ZraI GACGTC 1 cut(s) 1237
ZrmI AGTACT 1 cut(s) 1514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.