Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010846.1

Orthogroup ID

OG0007565

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 797

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010846.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 539 bp

atgggtaattgctgtgtgaccccaccccaaacgggttcgcccttaaagaacaagaagaacaagccgaacccatttgccatagactacgccgtcacccatggcggcagcaagctctccgtcttgaaggacccaaccggcaccgaaatcgagcagacgtatgaactcggccgcgagctcggccgcggagaattcggaatcacctacctctgtactgacaaggtcaccagcgagaagttcgcttgcaaatcgatttcgaagcagaagctgcggacggctgtggacatcgaggatgtgaggagggaggttgagatcatgaagcatttgcctaaccaccccaatattgtgagcttgaaagatacgtatgaggatgataatgcggtccatcttgtcatggagctctgtgagggcggtgagctcttcgataggatcgtctccagggggcattacaccgagcgtgccgctgccgctgtcactaagactattgtcgaagttgtgcagatgtgccacaagcacggtgtgatgcatcgggatctcaaacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

180

Amino Acids

20.09

Weight (kDa)

7.08

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41860 AT2G41860 AT3G57530 AT3G57530
fragaria_vesca	FvH4_6g23540 FvH4_6g23540
malus_domestica	MD12G1072600.v1.1 MD14G1069700.v1.1
prunus_persica	Prupe.7G064300_v2.0.a1
pyrus_communis	pycom12g06130
rosa_chinensis	RchiOBHm_Chr3g0481541 RchiOBHm_Chr3g0481591
rosa_laevigata	RLG00000023387
rosa_multiflora	Rmu_sc0010846.1_g000001 Rmu_sc0017309.1_g000002 Rmu_sc0019423.1_g000002 Rmu_sc0039298.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400340
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243800 Rh3BG279000 Rh3CG274000 Rh3DG270700
rosa_wichuraiana	Rw3G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	2 cut(s)	171, 183
AciI	CCGC	9 cut(s)	102, 169, 181, 183, 268, 377, 408, 459, 465
AclWI	GGATC	2 cut(s)	434, 537
AcoI	YGGCCR	2 cut(s)	166, 178
AcsI	RAATTY	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	517
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	124, 352
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	6 cut(s)	112, 175, 265, 348, 397, 415
AluI	AGCT	6 cut(s)	112, 175, 265, 348, 397, 415
Alw21I	GWGCWC	3 cut(s)	177, 399, 417
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	2 cut(s)	434, 537
AlwNI	CAGNNNCTG	1 cut(s)	265
AoxI	GGCC	2 cut(s)	166, 178
ApeKI	GCWGC	3 cut(s)	105, 265, 461
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	127, 379
AsuHPI	GGTGA	4 cut(s)	85, 190, 214, 422
AsuII	TTCGAA	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	127, 379
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	3 cut(s)	177, 399, 417
Bbv12I	GWGCWC	3 cut(s)	177, 399, 417
BbvI	GCAGC	3 cut(s)	117, 252, 448
BccI	CCATC	1 cut(s)	390
BceAI	ACGGC	2 cut(s)	74, 288
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	436
BisI	GCNGC	8 cut(s)	103, 106, 169, 181, 266, 459, 462, 465
BlsI	GCNGC	8 cut(s)	104, 107, 170, 182, 267, 460, 463, 466
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	2 cut(s)	127, 379
BmgT120I	GGNCC	2 cut(s)	127, 379
BmiI	GGNNCC	2 cut(s)	129, 139
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	2 cut(s)	510, 532
BoxI	GACNNNNGTC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	418
Bpu14I	TTCGAA	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	97, 181, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	248
BseDI	CCNNGG	3 cut(s)	97, 181, 435
BseGI	GGATG	2 cut(s)	295, 373
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	310
BseX3I	CGGCCG	2 cut(s)	166, 178
BseXI	GCAGC	3 cut(s)	117, 252, 448
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	2 cut(s)	171, 183
Bsh1285I	CGRYCG	2 cut(s)	169, 181
BshFI	GGCC	2 cut(s)	168, 180
BshNI	GGYRCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	248
BsiEI	CGRYCG	2 cut(s)	169, 181
BsiHKAI	GWGCWC	3 cut(s)	177, 399, 417
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	436
BsmBI	CGTCTC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	168, 180
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	177, 399, 417
Bsp143I	GATC	3 cut(s)	309, 426, 529
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	9 cut(s)	102, 169, 181, 183, 268, 377, 408, 459, 465
BspANI	GGCC	2 cut(s)	168, 180
BspDI	ATCGAT	1 cut(s)	248
BspFNI	CGCG	2 cut(s)	171, 183
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	129, 139
BspPI	GGATC	2 cut(s)	434, 537
BspQI	GCTCTTC	1 cut(s)	422
BspT104I	TTCGAA	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	97, 181, 435
BssMI	GATC	3 cut(s)	309, 426, 529
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	110, 173, 241, 456
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	2 cut(s)	97, 181
BstEII	GGTNACC	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	295, 373
BstFNI	CGCG	2 cut(s)	171, 183
BstKTI	GATC	3 cut(s)	312, 429, 532
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	3 cut(s)	309, 426, 529
BstMCI	CGRYCG	2 cut(s)	169, 181
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 265, 464
BstNI	CCWGG	1 cut(s)	436
BstPAI	GACNNNNGTC	1 cut(s)	482
BstPI	GGTNACC	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	434
BstSNI	TACGTA	1 cut(s)	360
BstUI	CGCG	2 cut(s)	171, 183
BstV1I	GCAGC	3 cut(s)	117, 252, 448
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BstZI	CGGCCG	2 cut(s)	166, 178
Bsu15I	ATCGAT	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	168, 180
BsuTUI	ATCGAT	1 cut(s)	248
BtgI	CCRYGG	2 cut(s)	97, 181
BtsCI	GGATG	2 cut(s)	295, 373
Cac8I	GCNNGC	4 cut(s)	110, 173, 241, 456
CaiI	CAGNNNCTG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	127, 379
Cfr42I	CCGCGG	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	3 cut(s)	98, 313, 391
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	3 cut(s)	311, 428, 531
DpnII	GATC	3 cut(s)	309, 426, 529
DraIII	CACNNNGTG	1 cut(s)	517
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	2 cut(s)	166, 178
EagI	CGGCCG	2 cut(s)	166, 178
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Ecl136II	GAGCTC	3 cut(s)	175, 397, 415
EclXI	CGGCCG	2 cut(s)	166, 178
Eco105I	TACGTA	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	3 cut(s)	177, 399, 417
Eco47I	GGWCC	2 cut(s)	127, 379
Eco52I	CGGCCG	2 cut(s)	166, 178
Eco53kI	GAGCTC	3 cut(s)	175, 397, 415
Eco91I	GGTNACC	1 cut(s)	220
EcoICRI	GAGCTC	3 cut(s)	175, 397, 415
EcoO109I	RGGNCCY	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	525
EcoT38I	GRGCYC	3 cut(s)	177, 399, 417
ErhI	CCWWGG	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	3 cut(s)	101, 316, 394
FaiI	YATR	6 cut(s)	80, 99, 159, 314, 363, 392
FatI	CATG	3 cut(s)	97, 312, 390
Fnu4HI	GCNGC	8 cut(s)	103, 106, 169, 181, 266, 459, 462, 465
FokI	GGATG	2 cut(s)	302, 380
FriOI	GRGCYC	3 cut(s)	177, 399, 417
Fsp4HI	GCNGC	8 cut(s)	103, 106, 169, 181, 266, 459, 462, 465
GluI	GCNGC	8 cut(s)	103, 106, 169, 181, 266, 459, 462, 465
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	168, 180
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	3 cut(s)	101, 316, 394
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	4 cut(s)	85, 190, 214, 422
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	3 cut(s)	121, 313, 527
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	2 cut(s)	155, 359
HpyCH4V	TGCA	3 cut(s)	243, 496, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 265, 464
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	2 cut(s)	155, 359
Hsp92II	CATG	3 cut(s)	101, 316, 394
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	309, 426, 529
LguI	GCTCTTC	1 cut(s)	422
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	4 cut(s)	148, 238, 421, 448
Lsp1109I	GCAGC	3 cut(s)	117, 252, 448
LweI	GCATC	2 cut(s)	510, 532
MaeII	ACGT	2 cut(s)	155, 359
MaeIII	GTNAC	4 cut(s)	16, 91, 220, 469
MalI	GATC	3 cut(s)	311, 428, 531
MboI	GATC	3 cut(s)	309, 426, 529
MboII	GAAGA	2 cut(s)	67, 409
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	3 cut(s)	177, 399, 417
MluCI	AATT	2 cut(s)	7, 188
MnlI	CCTC	7 cut(s)	215, 280, 288, 291, 295, 358, 397
Mph1103I	ATGCAT	1 cut(s)	525
MseI	TTAA	1 cut(s)	44
MspA1I	CMGCKG	3 cut(s)	183, 461, 467
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	436
MvnI	CGCG	2 cut(s)	171, 183
MwoI	GCNNNNNNNGC	3 cut(s)	177, 265, 464
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	3 cut(s)	309, 426, 529
NlaIII	CATG	3 cut(s)	101, 316, 394
NlaIV	GGNNCC	2 cut(s)	129, 139
NmeAIII	GCCGAG	2 cut(s)	144, 156
NmuCI	GTSAC	4 cut(s)	16, 91, 220, 469
NsiI	ATGCAT	1 cut(s)	525
NspV	TTCGAA	1 cut(s)	254
PagI	TCATGA	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	195
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	8 cut(s)	104, 107, 170, 182, 267, 460, 463, 466
Ppu21I	YACGTR	1 cut(s)	360
PpuMI	RGGWCCY	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	482
Psp124BI	GAGCTC	3 cut(s)	177, 399, 417
Psp5II	RGGWCCY	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	434
PspEI	GGTNACC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	129, 139
PspPI	GGNCC	2 cut(s)	127, 379
PspPPI	RGGWCCY	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SacI	GAGCTC	3 cut(s)	177, 399, 417
SacII	CCGCGG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	8 cut(s)	103, 106, 169, 181, 266, 459, 462, 465
Sau3AI	GATC	3 cut(s)	309, 426, 529
Sau96I	GGNCC	2 cut(s)	127, 379
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	3 cut(s)	177, 399, 417
SfaNI	GCATC	2 cut(s)	510, 532
Sfr303I	CCGCGG	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	254
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	127, 379
SnaBI	TACGTA	1 cut(s)	360
Sse9I	AATT	2 cut(s)	7, 188
SsiI	CCGC	9 cut(s)	102, 169, 181, 183, 268, 377, 408, 459, 465
SspI	AATATT	1 cut(s)	340
SstI	GAGCTC	3 cut(s)	177, 399, 417
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	2 cut(s)	158, 362
TaqI	TCGA	6 cut(s)	147, 248, 254, 285, 420, 486
TasI	AATT	2 cut(s)	7, 188
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	5 cut(s)	105, 171, 183, 461, 467
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TseFI	GTSAC	4 cut(s)	16, 91, 220, 469
TseI	GCWGC	3 cut(s)	105, 265, 461
Tsp45I	GTSAC	4 cut(s)	16, 91, 220, 469
TspDTI	ATGAA	2 cut(s)	174, 329
TspGWI	ACGGA	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	2 cut(s)	127, 379
XapI	RAATTY	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.