Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007565

Physical Location & Seq

Genomic Coordinates Forward (+)

25631649 .. 25634415

Gene Structure 2767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG243800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAGCATTTGCCTAACCACCCCAATATCGTGAGCTTGAAAGATACGTATGAGGATGATAATGCGGTCCATCTTGTTATGGAGCTCTGTGAGGGCGGTGAGCTCTTCGATCGGATCGTCTCCAGGGGGCATTACACCGAGCGTGCCGCTGCTGCTGTCACTAAGACTATTGTGGAAGTTGTGCAGATGTGCCACAAGCACGGTGTGATGCATCGGGATCTCAAACCTGAGAACTTTTTATTTGCAAACAAGAAGGAAACAGCGGCTTTGAAGGCAATTGATTTCGGGTTGTCGGTCTTCTTTAAGCCTGGTGAAAAATTTAGTGAAATTGTTGGAAGTCCATACTACATGGCTCCCGAGGTGCTAAGGCGCAATTATGGTCCTGAAGTTGATGTGTGGAGTGCTGGAGTTATACTTTACATTTTACTTTGTGGTGTTCCACCTTTCTGGGCAGAAACTGAACAGGGAGTTGCACAAGCAATTATACGGTCTGTTGTAGATTTTAAGAGGGACCCCTGGCCTAAGGCTCCTGCATTTGCTTTGGATGCTCTACTGATGGGCAATGATGATGAGCACCTTCGCAAAGCATTCGACTTCTTTGATCAAAACAAAAGTGGGTACATTGAAGTTGAGGAGTTGCGAACTGCCTTGGCTCCTGAAGTTGATGATAACGTTGAAGATGTTATTAGTGCCATTATCAATGACGTGGATACAGACAAGGATGGAAAAATAAGTTACGAGGAGTTTGCCGCCATGATGAAGGCCGGCACAGATTGGAGAAAAGCGTCAAGGCAGTATTCACGAGAGCGGTTCAATAGTCTGAGTTTGACATTGATGAGGGATGGATCATTGGAAGGTAAAACCGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

290

Amino Acids

32.73

Weight (kDa)

5.07

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 161	2.5e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 168	2.9e-53	Protein kinase domain
ABC1	PF03109	25 - 103	5.2e-06	ABC1 atypical kinase-like domain
EF-hand_7	PF13499	191 - 254	2.2e-17	EF-hand domain pair
EF-hand_1	PF00036	193 - 217	2e-06	EF hand domain
EF-hand_5	PF13202	193 - 215	5.9e-06	EF hand
EF-hand_6	PF13405	193 - 217	6.2e-07	EF-hand domain
EF-hand_1	PF00036	230 - 255	1.1e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41860 AT2G41860 AT3G57530 AT3G57530
fragaria_vesca	FvH4_6g23540 FvH4_6g23540
malus_domestica	MD12G1072600.v1.1 MD14G1069700.v1.1
prunus_persica	Prupe.7G064300_v2.0.a1
pyrus_communis	pycom12g06130
rosa_chinensis	RchiOBHm_Chr3g0481541 RchiOBHm_Chr3g0481591
rosa_laevigata	RLG00000023387
rosa_multiflora	Rmu_sc0010846.1_g000001 Rmu_sc0017309.1_g000002 Rmu_sc0019423.1_g000002 Rmu_sc0039298.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400340
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243800 Rh3BG279000 Rh3CG274000 Rh3DG270700
rosa_wichuraiana	Rw3G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	808
AciI	CCGC	6 cut(s)	65, 96, 147, 263, 750, 808
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	3 cut(s)	122, 225, 853
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	2 cut(s)	405, 678
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	1 cut(s)	620
AgsI	TTSAA	5 cut(s)	40, 271, 626, 677, 814
AjiI	CACGTC	1 cut(s)	706
AjnI	CCWGG	3 cut(s)	122, 307, 515
AluBI	AGCT	3 cut(s)	36, 85, 103
AluI	AGCT	3 cut(s)	36, 85, 103
Alw21I	GWGCWC	3 cut(s)	87, 105, 576
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	3 cut(s)	122, 225, 853
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	518, 762
ApeKI	GCWGC	2 cut(s)	149, 152
ApoI	RAATTY	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	67, 380, 511
AsuHPI	GGTGA	2 cut(s)	110, 323
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	3 cut(s)	67, 380, 511
AxyI	CCTNAGG	1 cut(s)	522
BanII	GRGCYC	2 cut(s)	87, 105
BauI	CACGAG	1 cut(s)	801
BbsI	GAAGAC	1 cut(s)	289
Bbv12I	GWGCWC	3 cut(s)	87, 105, 576
BbvI	GCAGC	2 cut(s)	136, 139
BccI	CCATC	4 cut(s)	78, 550, 716, 836
BcgI	CGANNNNNNTGC	4 cut(s)	571, 605, 728, 762
BciT130I	CCWGG	3 cut(s)	124, 309, 517
BciVI	GTATCC	1 cut(s)	703
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	5 cut(s)	147, 150, 153, 264, 750
BlsI	GCNGC	5 cut(s)	148, 151, 154, 265, 751
Bme1390I	CCNGG	3 cut(s)	124, 309, 517
Bme18I	GGWCC	3 cut(s)	67, 380, 511
BmeT110I	CYCGRG	1 cut(s)	356
BmgBI	CACGTC	1 cut(s)	706
BmgT120I	GGNCC	3 cut(s)	67, 380, 511
BmiI	GGNNCC	5 cut(s)	354, 512, 513, 528, 654
BmrFI	CCNGG	3 cut(s)	124, 309, 517
BmsI	GCATC	3 cut(s)	198, 220, 535
BpiI	GAAGAC	1 cut(s)	289
BpmI	CTGGAG	2 cut(s)	106, 426
Bpu10I	CCTNAGC	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	123, 357, 515, 648
Bse118I	RCCGGY	1 cut(s)	764
Bse21I	CCTNAGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	3 cut(s)	124, 309, 517
BseDI	CCNNGG	4 cut(s)	123, 357, 515, 648
BseGI	GGATG	4 cut(s)	61, 550, 727, 847
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	2 cut(s)	219, 812
BseRI	GAGGAG	2 cut(s)	647, 755
BseXI	GCAGC	2 cut(s)	136, 139
BsgI	GTGCAG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	520, 764
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	3 cut(s)	87, 105, 576
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	765
BslFI	GGGAC	1 cut(s)	524
BsmAI	GTCTC	1 cut(s)	124
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	520, 764
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	3 cut(s)	87, 105, 576
Bsp143I	GATC	5 cut(s)	109, 114, 217, 601, 845
BspACI	CCGC	6 cut(s)	65, 96, 147, 263, 750, 808
BspANI	GGCC	2 cut(s)	520, 764
BspCNI	CTCAG	2 cut(s)	220, 813
BspLI	GGNNCC	5 cut(s)	354, 512, 513, 528, 654
BspPI	GGATC	3 cut(s)	122, 225, 853
BspQI	GCTCTTC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	808
BsrDI	GCAATG	1 cut(s)	568
BsrFI	RCCGGY	1 cut(s)	764
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	4 cut(s)	123, 357, 515, 648
BssMI	GATC	5 cut(s)	109, 114, 217, 601, 845
BssSI	CACGAG	1 cut(s)	801
BssT1I	CCWWGG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	801
Bst2UI	CCWGG	3 cut(s)	124, 309, 517
Bst4CI	ACNGT	2 cut(s)	203, 489
Bst6I	CTCTTC	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	144, 766
BstDEI	CTNAG	5 cut(s)	162, 228, 365, 522, 821
BstF5I	GGATG	4 cut(s)	61, 550, 727, 847
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	5 cut(s)	112, 117, 220, 604, 848
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	5 cut(s)	109, 114, 217, 601, 845
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 272, 545
BstNI	CCWGG	3 cut(s)	124, 309, 517
BstSCI	CCNGG	3 cut(s)	122, 307, 515
BstSNI	TACGTA	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	136, 139
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	522
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	2 cut(s)	520, 764
BtrI	CACGTC	1 cut(s)	706
BtsCI	GGATG	4 cut(s)	61, 550, 727, 847
Cac8I	GCNNGC	2 cut(s)	144, 766
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	3 cut(s)	67, 380, 511
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	2 cut(s)	349, 754
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	5 cut(s)	162, 228, 365, 522, 821
DpnI	GATC	5 cut(s)	111, 116, 219, 603, 847
DpnII	GATC	5 cut(s)	109, 114, 217, 601, 845
DraIII	CACNNNGTG	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	2 cut(s)	85, 103
Eco105I	TACGTA	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	2 cut(s)	87, 105
Eco47I	GGWCC	3 cut(s)	67, 380, 511
Eco53kI	GAGCTC	2 cut(s)	85, 103
Eco57I	CTGAAG	2 cut(s)	405, 678
Eco81I	CCTNAGG	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	356
EcoICRI	GAGCTC	2 cut(s)	85, 103
EcoO109I	RGGNCCY	1 cut(s)	511
EcoRII	CCWGG	3 cut(s)	122, 307, 515
EcoT14I	CCWWGG	1 cut(s)	648
EcoT22I	ATGCAT	1 cut(s)	213
EcoT38I	GRGCYC	2 cut(s)	87, 105
ErhI	CCWWGG	1 cut(s)	648
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	352, 757
FaiI	YATR	8 cut(s)	51, 80, 343, 350, 378, 413, 485, 755
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	2 cut(s)	348, 753
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	5 cut(s)	147, 150, 153, 264, 750
FokI	GGATG	4 cut(s)	68, 557, 734, 854
FriOI	GRGCYC	2 cut(s)	87, 105
Fsp4HI	GCNGC	5 cut(s)	147, 150, 153, 264, 750
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	5 cut(s)	147, 150, 153, 264, 750
GsuI	CTGGAG	2 cut(s)	106, 426
HaeIII	GGCC	2 cut(s)	520, 764
HapII	CCGG	1 cut(s)	765
HgaI	GACGC	1 cut(s)	774
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	352, 757
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	765
HphI	GGTGA	2 cut(s)	110, 323
Hpy188I	TCNGA	2 cut(s)	114, 822
Hpy188III	TCNNGA	6 cut(s)	31, 215, 356, 383, 656, 801
HpyAV	CCTTC	5 cut(s)	247, 265, 587, 754, 848
HpyCH4III	ACNGT	2 cut(s)	203, 489
HpyCH4IV	ACGT	3 cut(s)	47, 672, 705
HpyCH4V	TGCA	5 cut(s)	184, 211, 245, 473, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 272, 545
HpyF3I	CTNAG	5 cut(s)	162, 228, 365, 522, 821
HpySE526I	ACGT	3 cut(s)	47, 672, 705
Hsp92II	CATG	2 cut(s)	352, 757
HspAI	GCGC	1 cut(s)	370
KflI	GGGWCCC	1 cut(s)	511
KroI	GCCGGC	1 cut(s)	764
KroNI	GCCGGC	1 cut(s)	766
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	5 cut(s)	109, 114, 217, 601, 845
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	4 cut(s)	82, 358, 532, 658
Lsp1109I	GCAGC	2 cut(s)	136, 139
LweI	GCATC	3 cut(s)	198, 220, 535
MaeII	ACGT	3 cut(s)	47, 672, 705
MaeIII	GTNAC	2 cut(s)	157, 734
MalI	GATC	5 cut(s)	111, 116, 219, 603, 847
MbiI	CCGCTC	1 cut(s)	808
MboI	GATC	5 cut(s)	109, 114, 217, 601, 845
MboII	GAAGA	3 cut(s)	97, 289, 689
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	3 cut(s)	87, 105, 576
MluCI	AATT	5 cut(s)	276, 317, 327, 373, 480
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	7 cut(s)	46, 85, 352, 501, 625, 733, 831
Mph1103I	ATGCAT	1 cut(s)	213
MroNI	GCCGGC	1 cut(s)	764
MseI	TTAA	3 cut(s)	303, 504, 871
MspA1I	CMGCKG	2 cut(s)	149, 263
MspI	CCGG	1 cut(s)	765
MspR9I	CCNGG	3 cut(s)	124, 309, 517
MunI	CAATTG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	3 cut(s)	124, 309, 517
MwoI	GCNNNNNNNGC	3 cut(s)	152, 272, 545
NaeI	GCCGGC	1 cut(s)	766
NdeII	GATC	5 cut(s)	109, 114, 217, 601, 845
NgoMIV	GCCGGC	1 cut(s)	764
NlaIII	CATG	2 cut(s)	352, 757
NlaIV	GGNNCC	5 cut(s)	354, 512, 513, 528, 654
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	587
PdiI	GCCGGC	1 cut(s)	766
PkrI	GCNGC	5 cut(s)	148, 151, 154, 265, 751
Ple19I	CGATCG	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	48
PpuMI	RGGWCCY	1 cut(s)	511
Psp124BI	GAGCTC	2 cut(s)	87, 105
Psp1406I	AACGTT	1 cut(s)	672
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	3 cut(s)	122, 307, 515
PspGI	CCWGG	3 cut(s)	122, 307, 515
PspN4I	GGNNCC	5 cut(s)	354, 512, 513, 528, 654
PspPI	GGNCC	3 cut(s)	67, 380, 511
PspPPI	RGGWCCY	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	217
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
SacI	GAGCTC	2 cut(s)	87, 105
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	303, 504, 871
SatI	GCNGC	5 cut(s)	147, 150, 153, 264, 750
Sau3AI	GATC	5 cut(s)	109, 114, 217, 601, 845
Sau96I	GGNCC	3 cut(s)	67, 380, 511
ScrFI	CCNGG	3 cut(s)	124, 309, 517
SduI	GDGCHC	3 cut(s)	87, 105, 576
SfaNI	GCATC	3 cut(s)	198, 220, 535
SinI	GGWCC	3 cut(s)	67, 380, 511
SnaBI	TACGTA	1 cut(s)	48
Sse9I	AATT	5 cut(s)	276, 317, 327, 373, 480
SsiI	CCGC	6 cut(s)	65, 96, 147, 263, 750, 808
SstI	GAGCTC	2 cut(s)	87, 105
StyD4I	CCNGG	3 cut(s)	122, 307, 515
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	203, 489
TaiI	ACGT	3 cut(s)	50, 675, 708
TaqI	TCGA	2 cut(s)	108, 591
TaqII	GACCGA	1 cut(s)	283
TasI	AATT	5 cut(s)	276, 317, 327, 373, 480
TauI	GCSGC	3 cut(s)	149, 266, 752
Tru1I	TTAA	3 cut(s)	303, 504, 871
Tru9I	TTAA	3 cut(s)	303, 504, 871
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	149, 152
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	17, 773
VpaK11BI	GGWCC	3 cut(s)	67, 380, 511
XapI	RAATTY	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.