Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017309.1

Orthogroup ID

OG0007565

Physical Location & Seq

Genomic Coordinates Reverse (-)

6263 .. 7549

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017309.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggatactagcaacaacggcaagattaacattgatgagctaagaattgggttacataaacttggccatcagattcctgatactgatcttcatatcctaatggaagctggtgatgtagataatgatgggtatctggactatggagagtttgttgccatttctgttcacctaagaaggatgggcaatgatgatgagcaccttcgcaaagcattcgacttctttgatcaaaacaaaagtgggtacattgaagttgaggagttgcgaactgccttggctcctgaagttgatgataacgttgaagatgttattagtgccattatcaatgacgtggatacagacaaggatggaaaaataagttacgaggagtttgccgccatgatgaaggccggcacagattggagaaaagcatcaaggcagtattcacgagagcggttcaatagtctgagtttgacattgatgagggatggatcgttggaaggtaaaaccgagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

164

Amino Acids

18.6

Weight (kDa)

4.56

Isoelectric Point (pI)

28.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41860 AT2G41860 AT3G57530 AT3G57530
fragaria_vesca	FvH4_6g23540 FvH4_6g23540
malus_domestica	MD12G1072600.v1.1 MD14G1069700.v1.1
prunus_persica	Prupe.7G064300_v2.0.a1
pyrus_communis	pycom12g06130
rosa_chinensis	RchiOBHm_Chr3g0481541 RchiOBHm_Chr3g0481591
rosa_laevigata	RLG00000023387
rosa_multiflora	Rmu_sc0010846.1_g000001 Rmu_sc0017309.1_g000002 Rmu_sc0019423.1_g000002 Rmu_sc0039298.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400340
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243800 Rh3BG279000 Rh3CG274000 Rh3DG270700
rosa_wichuraiana	Rw3G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	430
AciI	CCGC	2 cut(s)	372, 430
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	1 cut(s)	475
AcoI	YGGCCR	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	248, 299, 436
AjiI	CACGTC	1 cut(s)	328
AluBI	AGCT	2 cut(s)	40, 107
AluI	AGCT	2 cut(s)	40, 107
Alw21I	GWGCWC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	2 cut(s)	64, 384
AsuHPI	GGTGA	2 cut(s)	122, 158
BalI	TGGCCA	1 cut(s)	66
BauI	CACGAG	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	198
BccI	CCATC	5 cut(s)	75, 119, 172, 338, 458
BceAI	ACGGC	1 cut(s)	34
BcgI	CGANNNNNNTGC	4 cut(s)	193, 227, 350, 384
BciVI	GTATCC	1 cut(s)	325
BclI	TGATCA	1 cut(s)	223
BfaI	CTAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
BmgBI	CACGTC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	276
BmsI	GCATC	1 cut(s)	416
BsaBI	GATNNNNATC	2 cut(s)	84, 129
BsaJI	CCNNGG	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse118I	RCCGGY	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	190
Bse8I	GATNNNNATC	2 cut(s)	84, 129
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	3 cut(s)	183, 349, 469
BseJI	GATNNNNATC	2 cut(s)	84, 129
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	434
BseRI	GAGGAG	2 cut(s)	269, 377
BshFI	GGCC	2 cut(s)	66, 386
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	66, 386
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	85, 223, 467
BspACI	CCGC	2 cut(s)	372, 430
BspANI	GGCC	2 cut(s)	66, 386
BspCNI	CTCAG	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	3 cut(s)	85, 223, 467
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	41, 170, 443
BstF5I	GGATG	3 cut(s)	183, 349, 469
BstKTI	GATC	3 cut(s)	88, 226, 470
BstMBI	GATC	3 cut(s)	85, 223, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	66, 386
BtrI	CACGTC	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	183, 349, 469
Cac8I	GCNNGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	5 cut(s)	40, 66, 107, 275, 386
CviKI_1	RGCY	5 cut(s)	40, 66, 107, 275, 386
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	3 cut(s)	41, 170, 443
DpnI	GATC	3 cut(s)	87, 225, 469
DpnII	GATC	3 cut(s)	85, 223, 467
EaeI	YGGCCR	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	379
FaiI	YATR	4 cut(s)	57, 93, 141, 377
FatI	CATG	1 cut(s)	375
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	3 cut(s)	190, 356, 476
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	66, 386
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	1 cut(s)	379
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	2 cut(s)	122, 158
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	72, 444
Hpy188III	TCNNGA	4 cut(s)	77, 134, 278, 423
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	4 cut(s)	168, 209, 376, 470
HpyCH4IV	ACGT	2 cut(s)	294, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	3 cut(s)	41, 170, 443
HpySE526I	ACGT	2 cut(s)	294, 327
Hsp92II	CATG	1 cut(s)	379
KroI	GCCGGC	1 cut(s)	386
KroNI	GCCGGC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	85, 223, 467
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	90, 93, 119, 291, 400
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	2 cut(s)	294, 327
MaeIII	GTNAC	2 cut(s)	51, 356
MalI	GATC	3 cut(s)	87, 225, 469
MbiI	CCGCTC	1 cut(s)	430
MboI	GATC	3 cut(s)	85, 223, 467
MboII	GAAGA	2 cut(s)	80, 311
MhlI	GDGCHC	1 cut(s)	198
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	3 cut(s)	247, 355, 453
Mox20I	TGGCCA	1 cut(s)	66
MroNI	GCCGGC	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	2 cut(s)	27, 493
Msp20I	TGGCCA	1 cut(s)	66
MspI	CCGG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	18
NaeI	GCCGGC	1 cut(s)	388
NdeII	GATC	3 cut(s)	85, 223, 467
NgoMIV	GCCGGC	1 cut(s)	386
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	1 cut(s)	276
PctI	GAATGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	373
Psp1406I	AACGTT	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	276
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SaqAI	TTAA	2 cut(s)	27, 493
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	3 cut(s)	85, 223, 467
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	7 cut(s)	42, 109, 171, 201, 297, 330, 481
SfaNI	GCATC	1 cut(s)	416
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	2 cut(s)	372, 430
SspMI	CTAG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	270
TaiI	ACGT	2 cut(s)	297, 330
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	45
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	2 cut(s)	27, 493
Tru9I	TTAA	2 cut(s)	27, 493
TspDTI	ATGAA	2 cut(s)	80, 395
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.