Rmu_sc0019423.1_g000002

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019423.1
Physical Location & Seq
Forward (+)
10091 .. 11499
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019423.1_g000002.1.cds

Sequence Viewer

Length: 936 bp
atgggtaattgctgtgtgacccctccccaaacgggttcgcccttaaagaacaagaagaacaagccgaacccatttgccatagactacgccgtcacccacggcggcagcaagctctccgtcttgaaggacccaaccggcaccgaaatcgagcagacgtatgaactcggccgcgagctcggccgcggagaattcggaatcacctacctctgtactgacaaggtcaccagcgagaagttcgcttgcaaatcgatttcgaagcagaagctgcggacggctgtggacatcgaggatgtgaggagggaggttgagatcatgaagcatttgcctaaccaccccaatattgtgagcttgaaagatacgtatgaggatgataatgcggtccatcttgttatggagctctgtgagggcggtgagctcttcgataggatcgtctccagggggcattacaccgagcgtgccgccgctgctgtcactaagactattgtcgaagttgtgcagatgtgccacaagcacggtgtgatgcatcgggatctcaaacctgagaactttttatttgcaaacaagaaggaaacagcggctttgaaggcaattgatttcgggttgtcggtcttcttcaagcctggtgaaagatttagtgaaattgttggaagtccatactacatggctcccgaggtgctaaggcgcaattatggtcctgaagttgatgtgtggagtgctggagttatactttacattttactttgcggtgttccacctttctgggcagaaactgaacagggagttgcacaagccattatacggtctgttgtagattttaagagggacccctggcctaaggtttctgataatgcaaaagaccttgtgaagaagatgcttaatcctgacccgaagcagaggcttacagctcagcaagttctaggtacggataagctctga

Protein Analysis

311

Amino Acids

34.82

Weight (kDa)

7.6

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 137
AccII CGCG 2 cut(s) 171, 183
AclWI GGATC 2 cut(s) 434, 537
AcoI YGGCCR 2 cut(s) 166, 178
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 717
AdeI CACNNNGTG 1 cut(s) 517
AfaI GTAC 2 cut(s) 211, 922
AfiI CCNNNNNNNGG 2 cut(s) 32, 798
AgsI TTSAA 4 cut(s) 124, 352, 583, 616
AjnI CCWGG 3 cut(s) 434, 619, 827
AluBI AGCT 8 cut(s) 112, 175, 265, 348, 397, 415, 905, 931
AluI AGCT 8 cut(s) 112, 175, 265, 348, 397, 415, 905, 931
Alw21I GWGCWC 3 cut(s) 177, 399, 417
Alw26I GTCTC 1 cut(s) 436
AlwI GGATC 2 cut(s) 434, 537
AlwNI CAGNNNCTG 2 cut(s) 265, 770
Ama87I CYCGRG 1 cut(s) 668
AoxI GGCC 3 cut(s) 166, 178, 830
ApeKI GCWGC 3 cut(s) 105, 265, 464
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 1 cut(s) 684
AspS9I GGNCC 4 cut(s) 127, 379, 692, 823
AsuHPI GGTGA 5 cut(s) 85, 190, 214, 422, 635
AsuII TTCGAA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 4 cut(s) 127, 379, 692, 823
AxyI CCTNAGG 1 cut(s) 834
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 3 cut(s) 177, 399, 417
BbsI GAAGAC 1 cut(s) 601
Bbv12I GWGCWC 3 cut(s) 177, 399, 417
BbvI GCAGC 3 cut(s) 117, 252, 451
BccI CCATC 1 cut(s) 390
BceAI ACGGC 3 cut(s) 74, 115, 288
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 3 cut(s) 436, 621, 829
BcoDI GTCTC 1 cut(s) 436
BfaI CTAG 1 cut(s) 917
BisI GCNGC 9 cut(s) 103, 106, 169, 181, 266, 459, 462, 465, 576
BlpI GCTNAGC 1 cut(s) 906
BlsI GCNGC 9 cut(s) 104, 107, 170, 182, 267, 460, 463, 466, 577
Bme1390I CCNGG 3 cut(s) 436, 621, 829
Bme18I GGWCC 4 cut(s) 127, 379, 692, 823
BmeT110I CYCGRG 1 cut(s) 668
BmgT120I GGNCC 4 cut(s) 127, 379, 692, 823
BmiI GGNNCC 5 cut(s) 129, 139, 666, 824, 825
BmrFI CCNGG 3 cut(s) 436, 621, 829
BmsI GCATC 3 cut(s) 510, 532, 861
BoxI GACNNNNGTC 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 601
BpmI CTGGAG 2 cut(s) 418, 738
Bpu10I CCTNAGC 1 cut(s) 677
Bpu1102I GCTNAGC 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 360
BsaJI CCNNGG 5 cut(s) 97, 181, 435, 669, 827
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 798
Bse118I RCCGGY 1 cut(s) 134
Bse21I CCTNAGG 1 cut(s) 834
BseBI CCWGG 3 cut(s) 436, 621, 829
BseCI ATCGAT 1 cut(s) 248
BseDI CCNNGG 5 cut(s) 97, 181, 435, 669, 827
BseGI GGATG 2 cut(s) 295, 373
BseLI CCNNNNNNNGG 2 cut(s) 32, 798
BseMII CTCAG 2 cut(s) 531, 920
BseRI GAGGAG 1 cut(s) 310
BseX3I CGGCCG 2 cut(s) 166, 178
BseXI GCAGC 3 cut(s) 117, 252, 451
BsgI GTGCAG 1 cut(s) 515
Bsh1236I CGCG 2 cut(s) 171, 183
Bsh1285I CGRYCG 2 cut(s) 169, 181
BshFI GGCC 3 cut(s) 168, 180, 832
BshNI GGYRCC 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 248
BsiEI CGRYCG 2 cut(s) 169, 181
BsiHKAI GWGCWC 3 cut(s) 177, 399, 417
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 2 cut(s) 32, 798
BsmAI GTCTC 1 cut(s) 436
BsmBI CGTCTC 1 cut(s) 436
BsmFI GGGAC 1 cut(s) 836
BsnI GGCC 3 cut(s) 168, 180, 832
BsoBI CYCGRG 1 cut(s) 668
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 3 cut(s) 177, 399, 417
Bsp143I GATC 3 cut(s) 309, 426, 529
Bsp1720I GCTNAGC 1 cut(s) 906
BspANI GGCC 3 cut(s) 168, 180, 832
BspCNI CTCAG 2 cut(s) 532, 919
BspDI ATCGAT 1 cut(s) 248
BspFNI CGCG 2 cut(s) 171, 183
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 5 cut(s) 129, 139, 666, 824, 825
BspPI GGATC 2 cut(s) 434, 537
BspQI GCTCTTC 1 cut(s) 422
BspT104I TTCGAA 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 5 cut(s) 97, 181, 435, 669, 827
BssMI GATC 3 cut(s) 309, 426, 529
Bst2UI CCWGG 3 cut(s) 436, 621, 829
Bst4CI ACNGT 2 cut(s) 515, 801
Bst6I CTCTTC 1 cut(s) 422
BstAPI GCANNNNNTGC 1 cut(s) 265
BstBAI YACGTR 1 cut(s) 360
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 4 cut(s) 110, 173, 241, 456
BstDEI CTNAG 5 cut(s) 474, 540, 677, 834, 906
BstDSI CCRYGG 2 cut(s) 97, 181
BstEII GGTNACC 1 cut(s) 220
BstF5I GGATG 2 cut(s) 295, 373
BstFNI CGCG 2 cut(s) 171, 183
BstHHI GCGC 1 cut(s) 684
BstKTI GATC 3 cut(s) 312, 429, 532
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 3 cut(s) 309, 426, 529
BstMCI CGRYCG 2 cut(s) 169, 181
BstMWI GCNNNNNNNGC 4 cut(s) 177, 265, 464, 584
BstNI CCWGG 3 cut(s) 436, 621, 829
BstPAI GACNNNNGTC 1 cut(s) 482
BstPI GGTNACC 1 cut(s) 220
BstSCI CCNGG 3 cut(s) 434, 619, 827
BstSNI TACGTA 1 cut(s) 360
BstUI CGCG 2 cut(s) 171, 183
BstV1I GCAGC 3 cut(s) 117, 252, 451
BstV2I GAAGAC 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 529
BstXI CCANNNNNNTGG 1 cut(s) 759
BstYI RGATCY 1 cut(s) 529
BstZI CGGCCG 2 cut(s) 166, 178
Bsu15I ATCGAT 1 cut(s) 248
Bsu36I CCTNAGG 1 cut(s) 834
BsuRI GGCC 3 cut(s) 168, 180, 832
BsuTUI ATCGAT 1 cut(s) 248
BtgI CCRYGG 2 cut(s) 97, 181
BtsCI GGATG 2 cut(s) 295, 373
Cac8I GCNNGC 4 cut(s) 110, 173, 241, 456
CaiI CAGNNNCTG 2 cut(s) 265, 770
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 684
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 4 cut(s) 127, 379, 692, 823
Cfr42I CCGCGG 1 cut(s) 184
ClaI ATCGAT 1 cut(s) 248
Csp6I GTAC 2 cut(s) 210, 921
CviAII CATG 2 cut(s) 313, 661
CviQI GTAC 2 cut(s) 210, 921
DdeI CTNAG 5 cut(s) 474, 540, 677, 834, 906
DpnI GATC 3 cut(s) 311, 428, 531
DpnII GATC 3 cut(s) 309, 426, 529
DraIII CACNNNGTG 1 cut(s) 517
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 2 cut(s) 166, 178
EagI CGGCCG 2 cut(s) 166, 178
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Ecl136II GAGCTC 3 cut(s) 175, 397, 415
EclXI CGGCCG 2 cut(s) 166, 178
Eco105I TACGTA 1 cut(s) 360
Eco24I GRGCYC 3 cut(s) 177, 399, 417
Eco47I GGWCC 4 cut(s) 127, 379, 692, 823
Eco52I CGGCCG 2 cut(s) 166, 178
Eco53kI GAGCTC 3 cut(s) 175, 397, 415
Eco57I CTGAAG 1 cut(s) 717
Eco81I CCTNAGG 1 cut(s) 834
Eco88I CYCGRG 1 cut(s) 668
Eco91I GGTNACC 1 cut(s) 220
EcoICRI GAGCTC 3 cut(s) 175, 397, 415
EcoO109I RGGNCCY 2 cut(s) 127, 823
EcoO65I GGTNACC 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 188
EcoRII CCWGG 3 cut(s) 434, 619, 827
EcoT22I ATGCAT 1 cut(s) 525
EcoT38I GRGCYC 3 cut(s) 177, 399, 417
Esp3I CGTCTC 1 cut(s) 436
FaeI CATG 2 cut(s) 316, 664
FaqI GGGAC 1 cut(s) 836
FatI CATG 2 cut(s) 312, 660
Fnu4HI GCNGC 9 cut(s) 103, 106, 169, 181, 266, 459, 462, 465, 576
FokI GGATG 2 cut(s) 302, 380
FriOI GRGCYC 3 cut(s) 177, 399, 417
Fsp4HI GCNGC 9 cut(s) 103, 106, 169, 181, 266, 459, 462, 465, 576
FspBI CTAG 1 cut(s) 917
GlaI GCGC 1 cut(s) 683
GluI GCNGC 9 cut(s) 103, 106, 169, 181, 266, 459, 462, 465, 576
GsuI CTGGAG 2 cut(s) 418, 738
HaeIII GGCC 3 cut(s) 168, 180, 832
HapII CCGG 1 cut(s) 135
HhaI GCGC 1 cut(s) 684
Hin1II CATG 2 cut(s) 316, 664
Hin6I GCGC 1 cut(s) 682
HinP1I GCGC 1 cut(s) 682
HinfI GANTC 1 cut(s) 195
HpaII CCGG 1 cut(s) 135
HphI GGTGA 5 cut(s) 85, 190, 214, 422, 635
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 194, 844, 935
Hpy188III TCNNGA 6 cut(s) 121, 313, 527, 668, 695, 881
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 3 cut(s) 118, 559, 577
HpyCH4III ACNGT 2 cut(s) 515, 801
HpyCH4IV ACGT 2 cut(s) 155, 359
HpyCH4V TGCA 6 cut(s) 243, 496, 523, 557, 785, 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 265, 464, 584
HpyF3I CTNAG 5 cut(s) 474, 540, 677, 834, 906
HpySE526I ACGT 2 cut(s) 155, 359
Hsp92II CATG 2 cut(s) 316, 664
HspAI GCGC 1 cut(s) 682
KflI GGGWCCC 1 cut(s) 823
KspI CCGCGG 1 cut(s) 184
Kzo9I GATC 3 cut(s) 309, 426, 529
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 2 cut(s) 394, 670
Lsp1109I GCAGC 3 cut(s) 117, 252, 451
LweI GCATC 3 cut(s) 510, 532, 861
MaeI CTAG 1 cut(s) 917
MaeII ACGT 2 cut(s) 155, 359
MaeIII GTNAC 4 cut(s) 16, 91, 220, 469
MalI GATC 3 cut(s) 311, 428, 531
MboI GATC 3 cut(s) 309, 426, 529
MboII GAAGA 6 cut(s) 67, 409, 601, 604, 877, 880
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 3 cut(s) 177, 399, 417
MluCI AATT 5 cut(s) 7, 188, 588, 639, 685
MmeI TCCRAC 1 cut(s) 625
Mph1103I ATGCAT 1 cut(s) 525
MseI TTAA 3 cut(s) 44, 816, 876
MspA1I CMGCKG 3 cut(s) 183, 464, 575
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 3 cut(s) 436, 621, 829
MunI CAATTG 1 cut(s) 588
MvaI CCWGG 3 cut(s) 436, 621, 829
MvnI CGCG 2 cut(s) 171, 183
MwoI GCNNNNNNNGC 4 cut(s) 177, 265, 464, 584
NdeII GATC 3 cut(s) 309, 426, 529
NlaIII CATG 2 cut(s) 316, 664
NlaIV GGNNCC 5 cut(s) 129, 139, 666, 824, 825
NmeAIII GCCGAG 2 cut(s) 144, 156
NmuCI GTSAC 4 cut(s) 16, 91, 220, 469
NsiI ATGCAT 1 cut(s) 525
NspV TTCGAA 1 cut(s) 254
PagI TCATGA 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PfeI GAWTC 1 cut(s) 195
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 9 cut(s) 104, 107, 170, 182, 267, 460, 463, 466, 577
Ppu21I YACGTR 1 cut(s) 360
PpuMI RGGWCCY 2 cut(s) 127, 823
PshAI GACNNNNGTC 1 cut(s) 482
Psp124BI GAGCTC 3 cut(s) 177, 399, 417
Psp5II RGGWCCY 2 cut(s) 127, 823
Psp6I CCWGG 3 cut(s) 434, 619, 827
PspEI GGTNACC 1 cut(s) 220
PspGI CCWGG 3 cut(s) 434, 619, 827
PspN4I GGNNCC 5 cut(s) 129, 139, 666, 824, 825
PspPI GGNCC 4 cut(s) 127, 379, 692, 823
PspPPI RGGWCCY 2 cut(s) 127, 823
PstNI CAGNNNCTG 2 cut(s) 265, 770
PsuI RGATCY 1 cut(s) 529
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 2 cut(s) 211, 922
RsaNI GTAC 2 cut(s) 210, 921
SacI GAGCTC 3 cut(s) 177, 399, 417
SacII CCGCGG 1 cut(s) 184
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 3 cut(s) 44, 816, 876
SatI GCNGC 9 cut(s) 103, 106, 169, 181, 266, 459, 462, 465, 576
Sau3AI GATC 3 cut(s) 309, 426, 529
Sau96I GGNCC 4 cut(s) 127, 379, 692, 823
ScrFI CCNGG 3 cut(s) 436, 621, 829
SduI GDGCHC 3 cut(s) 177, 399, 417
SfaNI GCATC 3 cut(s) 510, 532, 861
Sfr303I CCGCGG 1 cut(s) 184
SfuI TTCGAA 1 cut(s) 254
SgrBI CCGCGG 1 cut(s) 184
SinI GGWCC 4 cut(s) 127, 379, 692, 823
SnaBI TACGTA 1 cut(s) 360
Sse9I AATT 5 cut(s) 7, 188, 588, 639, 685
SspI AATATT 1 cut(s) 340
SspMI CTAG 1 cut(s) 917
SstI GAGCTC 3 cut(s) 177, 399, 417
StyD4I CCNGG 3 cut(s) 434, 619, 827
TaaI ACNGT 2 cut(s) 515, 801
TaiI ACGT 2 cut(s) 158, 362
TaqI TCGA 6 cut(s) 147, 248, 254, 285, 420, 486
TaqII GACCGA 1 cut(s) 595
TasI AATT 5 cut(s) 7, 188, 588, 639, 685
TatI WGTACW 1 cut(s) 209
TauI GCSGC 6 cut(s) 105, 171, 183, 461, 464, 578
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 3 cut(s) 44, 816, 876
Tru9I TTAA 3 cut(s) 44, 816, 876
TseFI GTSAC 4 cut(s) 16, 91, 220, 469
TseI GCWGC 3 cut(s) 105, 265, 464
Tsp45I GTSAC 4 cut(s) 16, 91, 220, 469
TspDTI ATGAA 2 cut(s) 174, 329
TspGWI ACGGA 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 4 cut(s) 127, 379, 692, 823
XapI RAATTY 1 cut(s) 188
XspI CTAG 1 cut(s) 917
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.