Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007565

Physical Location & Seq

Genomic Coordinates Forward (+)

6210729 .. 6211648

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGGAAGTTGGTGGTATACAGGAGGGATTTAAGCTCATGGATATTAACAACAAGGGCAAGATTAACATTGACGAGCTAAGAGTTGGGTTGCATAAACTTGGCCATCAAATTCCTGATGGGGATCTTCATATTCTGATGGAAGCTGGTGATGTAGATAATGATGGATATCTAGACTACGGAGAATTTGTAGCCATCTCTGTTCACCTAAGAAGGATGGGCAATGATGAGGAGCACCTTCGCAAAGCATTTGAATTCTTCGACAAAAACCAGAATGGGTATATTGAAATTGAAGAGCTGCGAGATGCCTTGAGTAATGAAGTTGATAATAACATTGAAGATGTTATCAATGCCATTATTAATGACGTAGATACAGACAAGGATGGACGAATAAGTTATGAGGAGTTTGCCGCAATGATGAAGGCCGGGACAGATTGGAGGAAAGCATCAAGGCAGTATTCGCGAGATAGGTTCAATAGTCTCAGTTTGAAATTGTTTAGGGATGGATCATTGGAAGGTAAAACGGAGAGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

179

Amino Acids

20.33

Weight (kDa)

4.64

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	7 - 65	2.6e-08	EF-hand domain pair
EF-hand_7	PF13499	77 - 141	4.9e-19	EF-hand domain pair
EF-hand_1	PF00036	80 - 105	1.8e-07	EF hand domain
EF-hand_6	PF13405	80 - 105	2.3e-07	EF-hand domain
EF-hand_1	PF00036	116 - 142	9.7e-08	EF hand domain
EF-hand_5	PF13202	117 - 140	8e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41860 AT2G41860 AT3G57530 AT3G57530
fragaria_vesca	FvH4_6g23540 FvH4_6g23540
malus_domestica	MD12G1072600.v1.1 MD14G1069700.v1.1
prunus_persica	Prupe.7G064300_v2.0.a1
pyrus_communis	pycom12g06130
rosa_chinensis	RchiOBHm_Chr3g0481541 RchiOBHm_Chr3g0481591
rosa_laevigata	RLG00000023387
rosa_multiflora	Rmu_sc0010846.1_g000001 Rmu_sc0017309.1_g000002 Rmu_sc0019423.1_g000002 Rmu_sc0039298.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400340
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243800 Rh3BG279000 Rh3CG274000 Rh3DG270700
rosa_wichuraiana	Rw3G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AccII	CGCG	1 cut(s)	463
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	2 cut(s)	132, 514
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	3 cut(s)	111, 185, 254
AfaI	GTAC	1 cut(s)	532
AgsI	TTSAA	6 cut(s)	254, 287, 293, 338, 475, 490
AluBI	AGCT	4 cut(s)	37, 79, 146, 298
AluI	AGCT	4 cut(s)	37, 79, 146, 298
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	132, 514
AoxI	GGCC	2 cut(s)	103, 423
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	3 cut(s)	111, 185, 254
AseI	ATTAAT	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	2 cut(s)	161, 197
BalI	TGGCCA	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	8 cut(s)	113, 114, 133, 158, 203, 211, 377, 497
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	2 cut(s)	299, 411
BlsI	GCNGC	2 cut(s)	300, 412
Bme1390I	CCNGG	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	427
BmsI	GCATC	2 cut(s)	295, 455
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	427
BsaBI	GATNNNNATC	2 cut(s)	123, 168
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse3DI	GCAATG	2 cut(s)	229, 420
Bse8I	GATNNNNATC	2 cut(s)	123, 168
BseGI	GGATG	3 cut(s)	222, 388, 508
BseJI	GATNNNNATC	2 cut(s)	123, 168
BseMI	GCAATG	2 cut(s)	229, 420
BseMII	CTCAG	1 cut(s)	496
BseRI	GAGGAG	2 cut(s)	245, 416
BseXI	GCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	463
BshFI	GGCC	2 cut(s)	105, 425
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	105, 425
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	124, 506
Bsp68I	TCGCGA	1 cut(s)	463
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	2 cut(s)	105, 425
BspCNI	CTCAG	1 cut(s)	495
BspFNI	CGCG	1 cut(s)	463
BspPI	GGATC	2 cut(s)	132, 514
BspQI	GCTCTTC	1 cut(s)	288
BsrDI	GCAATG	2 cut(s)	229, 420
BssMI	GATC	2 cut(s)	124, 506
BssNAI	GTATAC	1 cut(s)	20
Bst1107I	GTATAC	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	288
BstDEI	CTNAG	3 cut(s)	80, 209, 482
BstF5I	GGATG	3 cut(s)	222, 388, 508
BstFNI	CGCG	1 cut(s)	463
BstKTI	GATC	2 cut(s)	127, 509
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	2 cut(s)	124, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	425
BstUI	CGCG	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BstZ17I	GTATAC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	105, 425
BtsCI	GGATG	3 cut(s)	222, 388, 508
BtuMI	TCGCGA	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	7 cut(s)	37, 79, 105, 146, 194, 298, 425
CviKI_1	RGCY	7 cut(s)	37, 79, 105, 146, 194, 298, 425
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	80, 209, 482
DpnI	GATC	2 cut(s)	126, 508
DpnII	GATC	2 cut(s)	124, 506
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	170
FaeI	CATG	1 cut(s)	43
FaiI	YATR	7 cut(s)	20, 41, 96, 132, 282, 399, 535
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	299, 411
FokI	GGATG	3 cut(s)	229, 395, 515
Fsp4HI	GCNGC	2 cut(s)	299, 411
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	2 cut(s)	299, 411
HaeIII	GGCC	2 cut(s)	105, 425
HapII	CCGG	1 cut(s)	426
Hin1II	CATG	1 cut(s)	43
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	2 cut(s)	161, 197
Hpy166II	GTNNAC	2 cut(s)	20, 205
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	3 cut(s)	116, 173, 462
Hpy8I	GTNNAC	2 cut(s)	20, 205
HpyAV	CCTTC	4 cut(s)	207, 248, 415, 509
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	3 cut(s)	80, 209, 482
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	124, 506
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	5 cut(s)	8, 129, 132, 284, 439
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	2 cut(s)	295, 455
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	366
MalI	GATC	2 cut(s)	126, 508
MboI	GATC	2 cut(s)	124, 506
MboII	GAAGA	4 cut(s)	119, 250, 305, 350
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	5 cut(s)	111, 185, 254, 288, 491
MluNI	TGGCCA	1 cut(s)	105
MnlI	CCTC	4 cut(s)	19, 223, 394, 432
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	4 cut(s)	33, 48, 66, 360
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	427
MvnI	CGCG	1 cut(s)	463
MwoI	GCNNNNNNNGC	1 cut(s)	460
NciI	CCSGG	1 cut(s)	427
NdeII	GATC	2 cut(s)	124, 506
NlaIII	CATG	1 cut(s)	43
NruI	TCGCGA	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	300, 412
PshBI	ATTAAT	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	124
RruI	TCGCGA	1 cut(s)	463
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	33, 48, 66, 360
SatI	GCNGC	2 cut(s)	299, 411
Sau3AI	GATC	2 cut(s)	124, 506
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	9 cut(s)	39, 81, 148, 210, 240, 300, 369, 473, 520
SfaNI	GCATC	2 cut(s)	295, 455
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	5 cut(s)	111, 185, 254, 288, 491
SsiI	CCGC	1 cut(s)	411
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	425
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	261
TasI	AATT	5 cut(s)	111, 185, 254, 288, 491
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	1 cut(s)	413
Tru1I	TTAA	4 cut(s)	33, 48, 66, 360
Tru9I	TTAA	4 cut(s)	33, 48, 66, 360
TseI	GCWGC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	119, 333, 434
TspGWI	ACGGA	1 cut(s)	195
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	3 cut(s)	111, 185, 254
XbaI	TCTAGA	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.