Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039298.1

Orthogroup ID

OG0007565

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2063

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039298.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgtgccacaagcacggtgtgatgcatcgggatctcaaacctgagaactttttatttgcaaacaagaaggaaacagcggctttgaaggcaattgatttcgggttgtcggtcttcttcaagcctggtgaaagatttagtgaaattgttggaagtccatactacatggctcccgaggtgctaaggcgcaattatggtcctgaagttgatgtgtggagtgctggagttatactttacattctactttgtggtgttccacctttctgggcagaaactgaacagggagttgcacaagccattatacggtctgttgtagattttaagagggacccctggcctaaggtttctgataatgcaaaagaccttgtgaagaagatgcttaatcctgacccgaagcagaggcttacagctcagcaagttctagatcatacttggttgcaaaatgcaaagaaagctccaaatgtttctttaggtgaaacagtgagagcaaggctcaagcaattctctgtaatgaacaagcttaagaaaagtgcactcaaggttatagctgagcatttgtcacaggatgaagttgctggcatacaagagggatttaagatcatggatactagcaacaacggcaagattaacattgatgagctaagaattgggttacataaacttggccatcagattcctgatactgatcttcatatcctaatggaagctggtgatgtagataatgatgggtatctggactatggagagtttgtagccatttctgttcacctaagaaggatgggcaatgatgatgagcaccttcgcaaagcattcgacttctttgatcaaaacaaaagtgggtacattgaagttgaggagttgcgaactgccttggctcctgaagttgatgataacgttgaagatgttattagtgccattatcaatgacgtggatacagacaaggttggtcacatttcatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

319

Amino Acids

36.01

Weight (kDa)

5.59

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41860 AT2G41860 AT3G57530 AT3G57530
fragaria_vesca	FvH4_6g23540 FvH4_6g23540
malus_domestica	MD12G1072600.v1.1 MD14G1069700.v1.1
prunus_persica	Prupe.7G064300_v2.0.a1
pyrus_communis	pycom12g06130
rosa_chinensis	RchiOBHm_Chr3g0481541 RchiOBHm_Chr3g0481591
rosa_laevigata	RLG00000023387
rosa_multiflora	Rmu_sc0010846.1_g000001 Rmu_sc0017309.1_g000002 Rmu_sc0019423.1_g000002 Rmu_sc0039298.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400340
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243800 Rh3BG279000 Rh3CG274000 Rh3DG270700
rosa_wichuraiana	Rw3G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AclI	AACGTT	1 cut(s)	891
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	661
AcuI	CTGAAG	2 cut(s)	219, 897
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	839
AfiI	CCNNNNNNNGG	1 cut(s)	300
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	4 cut(s)	85, 118, 845, 896
AjiI	CACGTC	1 cut(s)	925
AjnI	CCWGG	2 cut(s)	121, 329
AluBI	AGCT	6 cut(s)	407, 452, 517, 545, 637, 704
AluI	AGCT	6 cut(s)	407, 452, 517, 545, 637, 704
Alw21I	GWGCWC	2 cut(s)	532, 795
Alw44I	GTGCAC	1 cut(s)	528
AlwI	GGATC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	332, 661
ApaLI	GTGCAC	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	194, 325
AsuHPI	GGTGA	4 cut(s)	137, 482, 719, 755
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	194, 325
AxyI	CCTNAGG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	532
BalI	TGGCCA	1 cut(s)	663
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	2 cut(s)	532, 795
BccI	CCATC	3 cut(s)	672, 716, 769
BceAI	ACGGC	1 cut(s)	631
BcgI	CGANNNNNNTGC	2 cut(s)	790, 824
BciT130I	CCWGG	2 cut(s)	123, 331
BciVI	GTATCC	2 cut(s)	595, 922
BclI	TGATCA	1 cut(s)	820
BfaI	CTAG	3 cut(s)	419, 606, 958
BfrI	CTTAAG	1 cut(s)	518
BfuI	GTATCC	2 cut(s)	595, 922
BisI	GCNGC	1 cut(s)	78
BlpI	GCTNAGC	2 cut(s)	408, 546
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	2 cut(s)	123, 331
Bme18I	GGWCC	2 cut(s)	194, 325
BmeT110I	CYCGRG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	925
BmgT120I	GGNCC	2 cut(s)	194, 325
BmiI	GGNNCC	4 cut(s)	168, 326, 327, 873
BmrFI	CCNGG	2 cut(s)	123, 331
BmsI	GCATC	3 cut(s)	12, 34, 363
BpiI	GAAGAC	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	474, 506
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	179
Bpu1102I	GCTNAGC	2 cut(s)	408, 546
BpuEI	CTTGAG	2 cut(s)	476, 518
BsaBI	GATNNNNATC	2 cut(s)	681, 726
BsaJI	CCNNGG	3 cut(s)	171, 329, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse21I	CCTNAGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	787
Bse8I	GATNNNNATC	2 cut(s)	681, 726
BseBI	CCWGG	2 cut(s)	123, 331
BseDI	CCNNGG	3 cut(s)	171, 329, 867
BseGI	GGATG	2 cut(s)	568, 780
BseJI	GATNNNNATC	2 cut(s)	681, 726
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	787
BseMII	CTCAG	3 cut(s)	33, 422, 537
BseRI	GAGGAG	1 cut(s)	866
BseSI	GKGCMC	1 cut(s)	532
BshFI	GGCC	2 cut(s)	334, 663
BsiHKAI	GWGCWC	2 cut(s)	532, 795
BsiHKCI	CYCGRG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	806
BsnI	GGCC	2 cut(s)	334, 663
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	532, 795
Bsp143I	GATC	5 cut(s)	31, 421, 594, 682, 820
Bsp1720I	GCTNAGC	2 cut(s)	408, 546
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	334, 663
BspCNI	CTCAG	3 cut(s)	34, 421, 538
BspLI	GGNNCC	4 cut(s)	168, 326, 327, 873
BspPI	GGATC	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	787
BssECI	CCNNGG	3 cut(s)	171, 329, 867
BssMI	GATC	5 cut(s)	31, 421, 594, 682, 820
BssT1I	CCWWGG	1 cut(s)	867
Bst2UI	CCWGG	2 cut(s)	123, 331
Bst4CI	ACNGT	3 cut(s)	17, 303, 478
BstAFI	CTTAAG	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	574
BstDEI	CTNAG	7 cut(s)	42, 179, 336, 408, 546, 638, 767
BstF5I	GGATG	2 cut(s)	568, 780
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	5 cut(s)	34, 424, 597, 685, 823
BstMBI	GATC	5 cut(s)	31, 421, 594, 682, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 449, 615
BstNI	CCWGG	2 cut(s)	123, 331
BstSCI	CCNGG	2 cut(s)	121, 329
BstSLI	GKGCMC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	336
BsuI	GTATCC	2 cut(s)	595, 922
BsuRI	GGCC	2 cut(s)	334, 663
BtrI	CACGTC	1 cut(s)	925
BtsCI	GGATG	2 cut(s)	568, 780
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	574
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	194, 325
Csp6I	GTAC	1 cut(s)	838
CviAII	CATG	2 cut(s)	163, 598
CviQI	GTAC	1 cut(s)	838
DdeI	CTNAG	7 cut(s)	42, 179, 336, 408, 546, 638, 767
DpnI	GATC	5 cut(s)	33, 423, 596, 684, 822
DpnII	GATC	5 cut(s)	31, 421, 594, 682, 820
DraIII	CACNNNGTG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	661
Eco130I	CCWWGG	1 cut(s)	867
Eco47I	GGWCC	2 cut(s)	194, 325
Eco57I	CTGAAG	2 cut(s)	219, 897
Eco81I	CCTNAGG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	121, 329
EcoT14I	CCWWGG	1 cut(s)	867
EcoT22I	ATGCAT	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	867
FaeI	CATG	2 cut(s)	166, 601
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	2 cut(s)	162, 597
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	575, 787
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	3 cut(s)	419, 606, 958
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	334, 663
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	166, 601
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	1 cut(s)	670
HphI	GGTGA	4 cut(s)	137, 482, 719, 755
Hpy166II	GTNNAC	2 cut(s)	530, 763
Hpy188I	TCNGA	2 cut(s)	346, 669
Hpy188III	TCNNGA	8 cut(s)	29, 170, 197, 383, 419, 674, 731, 875
Hpy8I	GTNNAC	2 cut(s)	530, 763
HpyAV	CCTTC	4 cut(s)	61, 79, 765, 806
HpyCH4III	ACNGT	3 cut(s)	17, 303, 478
HpyCH4IV	ACGT	2 cut(s)	891, 924
HpyCH4V	TGCA	7 cut(s)	25, 59, 287, 353, 436, 443, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 449, 615
HpyF3I	CTNAG	7 cut(s)	42, 179, 336, 408, 546, 638, 767
HpySE526I	ACGT	2 cut(s)	891, 924
Hsp92II	CATG	2 cut(s)	166, 601
HspAI	GCGC	1 cut(s)	184
KflI	GGGWCCC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	5 cut(s)	31, 421, 594, 682, 820
LmnI	GCTCC	3 cut(s)	172, 457, 877
LweI	GCATC	3 cut(s)	12, 34, 363
MaeI	CTAG	3 cut(s)	419, 606, 958
MaeII	ACGT	2 cut(s)	891, 924
MaeIII	GTNAC	3 cut(s)	555, 648, 944
MalI	GATC	5 cut(s)	33, 423, 596, 684, 822
MboI	GATC	5 cut(s)	31, 421, 594, 682, 820
MboII	GAAGA	6 cut(s)	103, 106, 379, 382, 677, 908
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	532, 795
MlsI	TGGCCA	1 cut(s)	663
MluCI	AATT	5 cut(s)	90, 141, 187, 497, 642
MluNI	TGGCCA	1 cut(s)	663
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	5 cut(s)	166, 315, 390, 577, 844
Mox20I	TGGCCA	1 cut(s)	663
Mph1103I	ATGCAT	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	663
MseI	TTAA	5 cut(s)	318, 378, 519, 591, 624
Msp20I	TGGCCA	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	518
MspR9I	CCNGG	2 cut(s)	123, 331
MunI	CAATTG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	2 cut(s)	123, 331
MwoI	GCNNNNNNNGC	3 cut(s)	86, 449, 615
NdeII	GATC	5 cut(s)	31, 421, 594, 682, 820
NlaIII	CATG	2 cut(s)	166, 601
NlaIV	GGNNCC	4 cut(s)	168, 326, 327, 873
NmuCI	GTSAC	2 cut(s)	555, 944
NsiI	ATGCAT	1 cut(s)	27
PctI	GAATGC	1 cut(s)	806
PfeI	GAWTC	1 cut(s)	670
PkrI	GCNGC	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	325
Psp1406I	AACGTT	1 cut(s)	891
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	121, 329
PspGI	CCWGG	2 cut(s)	121, 329
PspN4I	GGNNCC	4 cut(s)	168, 326, 327, 873
PspPI	GGNCC	2 cut(s)	194, 325
PspPPI	RGGWCCY	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	839
RsaNI	GTAC	1 cut(s)	838
SaqAI	TTAA	5 cut(s)	318, 378, 519, 591, 624
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	5 cut(s)	31, 421, 594, 682, 820
Sau96I	GGNCC	2 cut(s)	194, 325
ScrFI	CCNGG	2 cut(s)	123, 331
SduI	GDGCHC	2 cut(s)	532, 795
SfaNI	GCATC	3 cut(s)	12, 34, 363
SinI	GGWCC	2 cut(s)	194, 325
SmlI	CTYRAG	3 cut(s)	491, 518, 533
SmoI	CTYRAG	3 cut(s)	491, 518, 533
Sse9I	AATT	5 cut(s)	90, 141, 187, 497, 642
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	3 cut(s)	419, 606, 958
StyD4I	CCNGG	2 cut(s)	121, 329
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	3 cut(s)	17, 303, 478
TaiI	ACGT	2 cut(s)	894, 927
TaqI	TCGA	1 cut(s)	810
TaqII	GACCGA	1 cut(s)	97
TasI	AATT	5 cut(s)	90, 141, 187, 497, 642
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	5 cut(s)	318, 378, 519, 591, 624
Tru9I	TTAA	5 cut(s)	318, 378, 519, 591, 624
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	2 cut(s)	555, 944
Tsp45I	GTSAC	2 cut(s)	555, 944
TspDTI	ATGAA	4 cut(s)	524, 579, 677, 942
TspRI	CASTG	1 cut(s)	483
Vha464I	CTTAAG	1 cut(s)	518
VneI	GTGCAC	1 cut(s)	528
VpaK11BI	GGWCC	2 cut(s)	194, 325
XbaI	TCTAGA	1 cut(s)	418
XspI	CTAG	3 cut(s)	419, 606, 958
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.