Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007565

Physical Location & Seq

Genomic Coordinates Forward (+)

27668546 .. 27669676

Gene Structure 1131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGTAATTTCTTAAAGAACAAGAAGAACAGGCCGAACCCATTTGCCATAGACTACGCCGTCGGCAGCAAGCTCTCCGTCTTGAAAGACCCAACCGGCACCGAAATCGAGCGGACATATGAACTCGGCCGCGAGCTCGGCCGCGGAGGATTCGAAATCACCTATCTCTGTACTGATAAGGTCACCAGTGCGAAGTTCGCTTGCAAATCGATTTCGAAGCAGAAGCTGAGGAAGGCGGTGGATATCGAGGATGTGAGGACGGAAGTTGAGATCATGAAGCATTTGCCTAAGCACCCGAATATTGTAAGCTTGAAAGATACGTATGAGGATGATAATGCGGTCCATCTTGTTATGGAGCTCTGTGAGGGCGGTGACCTCTTCGATCGGATCGTCTCCAGGGGGCATTACACCGAGCGTGCCGCTGCCGCTGTCACTAAGACTATTGTGGAAGTTGTTCAGATGTGCCACAAGCATGGTGTGATGCATCGGGATCTCAAACCTGAGAACTTTTTATTTGCAAACGAGAAGGAAACACCGCCTTTGAAGGCAACTGGTTTTTGGGTTGTCGGCCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

192

Amino Acids

21.65

Weight (kDa)

8.28

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	40 - 186	1.1e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	41 - 176	6.5e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41860 AT2G41860 AT3G57530 AT3G57530
fragaria_vesca	FvH4_6g23540 FvH4_6g23540
malus_domestica	MD12G1072600.v1.1 MD14G1069700.v1.1
prunus_persica	Prupe.7G064300_v2.0.a1
pyrus_communis	pycom12g06130
rosa_chinensis	RchiOBHm_Chr3g0481541 RchiOBHm_Chr3g0481591
rosa_laevigata	RLG00000023387
rosa_multiflora	Rmu_sc0010846.1_g000001 Rmu_sc0017309.1_g000002 Rmu_sc0019423.1_g000002 Rmu_sc0039298.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400340
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243800 Rh3BG279000 Rh3CG274000 Rh3DG270700
rosa_wichuraiana	Rw3G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	112
AccII	CGCG	2 cut(s)	132, 144
AclWI	GGATC	2 cut(s)	395, 498
AcoI	YGGCCR	2 cut(s)	127, 139
AfaI	GTAC	1 cut(s)	172
AgsI	TTSAA	3 cut(s)	85, 313, 544
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	5 cut(s)	73, 136, 226, 309, 358
AluI	AGCT	5 cut(s)	73, 136, 226, 309, 358
Alw21I	GWGCWC	2 cut(s)	138, 360
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	2 cut(s)	395, 498
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	4 cut(s)	32, 127, 139, 568
ApeKI	GCWGC	2 cut(s)	66, 422
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	3 cut(s)	151, 175, 383
AsuII	TTCGAA	2 cut(s)	153, 215
AvaII	GGWCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	2 cut(s)	138, 360
Bbv12I	GWGCWC	2 cut(s)	138, 360
BbvCI	CCTCAGC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	78, 409
BccI	CCATC	1 cut(s)	351
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	397
BisI	GCNGC	6 cut(s)	67, 130, 142, 420, 423, 426
BlsI	GCNGC	6 cut(s)	68, 131, 143, 421, 424, 427
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	397
BmsI	GCATC	2 cut(s)	471, 493
BpmI	CTGGAG	1 cut(s)	379
Bpu10I	CCTNAGC	2 cut(s)	227, 288
Bpu14I	TTCGAA	2 cut(s)	153, 215
Bsa29I	ATCGAT	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	142, 396
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	186, 556
BseBI	CCWGG	1 cut(s)	397
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	142, 396
BseGI	GGATG	2 cut(s)	256, 334
BseMII	CTCAG	2 cut(s)	218, 492
BseNI	ACTGG	2 cut(s)	186, 556
BseX3I	CGGCCG	2 cut(s)	127, 139
BseXI	GCAGC	2 cut(s)	78, 409
Bsh1236I	CGCG	2 cut(s)	132, 144
Bsh1285I	CGRYCG	3 cut(s)	130, 142, 385
BshFI	GGCC	4 cut(s)	34, 129, 141, 570
BshNI	GGYRCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	209
BsiEI	CGRYCG	3 cut(s)	130, 142, 385
BsiHKAI	GWGCWC	2 cut(s)	138, 360
BsiSI	CCGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	397
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	34, 129, 141, 570
Bsp119I	TTCGAA	2 cut(s)	153, 215
Bsp1286I	GDGCHC	2 cut(s)	138, 360
Bsp143I	GATC	4 cut(s)	270, 382, 387, 490
BspANI	GGCC	4 cut(s)	34, 129, 141, 570
BspCNI	CTCAG	2 cut(s)	219, 493
BspDI	ATCGAT	1 cut(s)	209
BspFNI	CGCG	2 cut(s)	132, 144
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	2 cut(s)	395, 498
BspT104I	TTCGAA	2 cut(s)	153, 215
BspT107I	GGYRCC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	186, 556
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	142, 396
BssMI	GATC	4 cut(s)	270, 382, 387, 490
Bst2UI	CCWGG	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	383
BstBAI	YACGTR	1 cut(s)	321
BstBI	TTCGAA	2 cut(s)	153, 215
BstC8I	GCNNGC	4 cut(s)	71, 134, 202, 417
BstDEI	CTNAG	4 cut(s)	227, 288, 435, 501
BstDSI	CCRYGG	1 cut(s)	142
BstEII	GGTNACC	2 cut(s)	181, 371
BstF5I	GGATG	2 cut(s)	256, 334
BstFNI	CGCG	2 cut(s)	132, 144
BstKTI	GATC	4 cut(s)	273, 385, 390, 493
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	4 cut(s)	270, 382, 387, 490
BstMCI	CGRYCG	3 cut(s)	130, 142, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 197, 425
BstNI	CCWGG	1 cut(s)	397
BstPI	GGTNACC	2 cut(s)	181, 371
BstSCI	CCNGG	1 cut(s)	395
BstSNI	TACGTA	1 cut(s)	321
BstUI	CGCG	2 cut(s)	132, 144
BstV1I	GCAGC	2 cut(s)	78, 409
BstX2I	RGATCY	1 cut(s)	490
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	490
BstZI	CGGCCG	2 cut(s)	127, 139
Bsu15I	ATCGAT	1 cut(s)	209
BsuRI	GGCC	4 cut(s)	34, 129, 141, 570
BsuTUI	ATCGAT	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	256, 334
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	4 cut(s)	71, 134, 202, 417
CaiI	CAGNNNCTG	1 cut(s)	226
CciI	TCATGA	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	340
Cfr42I	CCGCGG	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	2 cut(s)	274, 473
CviJI	RGCY	9 cut(s)	34, 73, 129, 136, 141, 226, 309, 358, 570
CviKI_1	RGCY	9 cut(s)	34, 73, 129, 136, 141, 226, 309, 358, 570
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	4 cut(s)	227, 288, 435, 501
DpnI	GATC	4 cut(s)	272, 384, 389, 492
DpnII	GATC	4 cut(s)	270, 382, 387, 490
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	2 cut(s)	127, 139
EagI	CGGCCG	2 cut(s)	127, 139
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Ecl136II	GAGCTC	2 cut(s)	136, 358
EclXI	CGGCCG	2 cut(s)	127, 139
Eco105I	TACGTA	1 cut(s)	321
Eco24I	GRGCYC	2 cut(s)	138, 360
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	340
Eco52I	CGGCCG	2 cut(s)	127, 139
Eco53kI	GAGCTC	2 cut(s)	136, 358
Eco91I	GGTNACC	2 cut(s)	181, 371
EcoICRI	GAGCTC	2 cut(s)	136, 358
EcoO65I	GGTNACC	2 cut(s)	181, 371
EcoRII	CCWGG	1 cut(s)	395
EcoRV	GATATC	1 cut(s)	244
EcoT22I	ATGCAT	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	138, 360
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	2 cut(s)	277, 476
FaiI	YATR	7 cut(s)	50, 118, 120, 275, 324, 353, 474
FatI	CATG	2 cut(s)	273, 472
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	6 cut(s)	67, 130, 142, 420, 423, 426
FokI	GGATG	2 cut(s)	263, 341
FriOI	GRGCYC	2 cut(s)	138, 360
Fsp4HI	GCNGC	6 cut(s)	67, 130, 142, 420, 423, 426
GluI	GCNGC	6 cut(s)	67, 130, 142, 420, 423, 426
GsuI	CTGGAG	1 cut(s)	379
HaeIII	GGCC	4 cut(s)	34, 129, 141, 570
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	2 cut(s)	277, 476
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	3 cut(s)	151, 175, 383
Hpy188I	TCNGA	2 cut(s)	387, 459
Hpy188III	TCNNGA	3 cut(s)	82, 274, 488
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	226, 520, 538
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	3 cut(s)	204, 484, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 197, 425
HpyF3I	CTNAG	4 cut(s)	227, 288, 435, 501
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	2 cut(s)	277, 476
KspI	CCGCGG	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	270, 382, 387, 490
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	7 cut(s)	16, 109, 199, 382, 409, 513, 537
Lsp1109I	GCAGC	2 cut(s)	78, 409
LweI	GCATC	2 cut(s)	471, 493
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	3 cut(s)	181, 371, 430
MalI	GATC	4 cut(s)	272, 384, 389, 492
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	4 cut(s)	270, 382, 387, 490
MboII	GAAGA	2 cut(s)	37, 370
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	138, 360
MluCI	AATT	1 cut(s)	7
MnlI	CCTC	7 cut(s)	140, 222, 241, 249, 319, 358, 386
Mph1103I	ATGCAT	1 cut(s)	486
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	14, 577
MslI	CAYNNNNRTG	1 cut(s)	471
MspA1I	CMGCKG	3 cut(s)	144, 422, 428
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	397
MvnI	CGCG	2 cut(s)	132, 144
MwoI	GCNNNNNNNGC	3 cut(s)	138, 197, 425
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	4 cut(s)	270, 382, 387, 490
NlaIII	CATG	2 cut(s)	277, 476
NlaIV	GGNNCC	1 cut(s)	100
NmeAIII	GCCGAG	2 cut(s)	105, 117
NmuCI	GTSAC	3 cut(s)	181, 371, 430
NsiI	ATGCAT	1 cut(s)	486
NspV	TTCGAA	2 cut(s)	153, 215
PagI	TCATGA	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	6 cut(s)	68, 131, 143, 421, 424, 427
Ple19I	CGATCG	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	321
Psp124BI	GAGCTC	2 cut(s)	138, 360
Psp6I	CCWGG	1 cut(s)	395
PspEI	GGTNACC	2 cut(s)	181, 371
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	490
PvuI	CGATCG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	2 cut(s)	138, 360
SacII	CCGCGG	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	14, 577
SatI	GCNGC	6 cut(s)	67, 130, 142, 420, 423, 426
Sau3AI	GATC	4 cut(s)	270, 382, 387, 490
Sau96I	GGNCC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	2 cut(s)	138, 360
SfaNI	GCATC	2 cut(s)	471, 493
Sfr303I	CCGCGG	1 cut(s)	145
SfuI	TTCGAA	2 cut(s)	153, 215
SgrBI	CCGCGG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	471
SnaBI	TACGTA	1 cut(s)	321
Sse9I	AATT	1 cut(s)	7
SspI	AATATT	1 cut(s)	301
SstI	GAGCTC	2 cut(s)	138, 360
StyD4I	CCNGG	1 cut(s)	395
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	6 cut(s)	108, 153, 209, 215, 246, 381
TasI	AATT	1 cut(s)	7
TatI	WGTACW	1 cut(s)	170
TauI	GCSGC	4 cut(s)	132, 144, 422, 428
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	2 cut(s)	14, 577
Tru9I	TTAA	2 cut(s)	14, 577
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	3 cut(s)	181, 371, 430
TseI	GCWGC	2 cut(s)	66, 422
Tsp45I	GTSAC	3 cut(s)	181, 371, 430
TspDTI	ATGAA	2 cut(s)	135, 290
TspGWI	ACGGA	2 cut(s)	67, 275
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.