Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007565

Physical Location & Seq

Genomic Coordinates Forward (+)

27373955 .. 27376738

Gene Structure 2784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG279000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAAGCATTTGCCTAAGCACCCCAATATTGTGAGCTTGAAAGATACGTATGAGGATGATAATGCGGTCCACCTTGTTATGGAGCTCTGTGAGGGCGGTGAGCTCTTCGATCGGATCGTGTCCAGAGGGCATTACACGGAGCGTGCCGCCGCTGCTGTCACTAAGACTATTGTGGAAGTTGTTCAGGGTGATGTAGATAATGATGGGTATCTGGACTATGGAGAGTTTGTAGCCATTTCTGTTCACCTAAGAAGGATGGGCAATGATGATGAGCACCTTTGCAAAGCATTCGACTTCTTTGATCAAAACAAAAGTGGGTACATTGAAGTTGAGGAGTTGCGAACTGCCTTGGCTCCTGAAGTTGATGATAACGTTGAAGATGTTATTAGTGCCATTATCAATGACGTGGATACAGACAAGGATGGAAAAATAAGTTACGAGGAGTTTGCCGCCATGATGAAGGCCGGCACAGATTGGAGAAAAGCGTCAAGGCAGTATTCACGAGATCGGTTCAATAGTCTCAGTTTGAAATTGATGAGGGATGGATCGTTGGAAGGTAAAACCGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

190

Amino Acids

21.49

Weight (kDa)

4.69

Isoelectric Point (pI)

25.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 61	5.4e-11	Protein kinase domain
EF-hand_7	PF13499	91 - 154	1.2e-17	EF-hand domain pair
EF-hand_1	PF00036	94 - 117	6.8e-06	EF hand domain
EF-hand_6	PF13405	94 - 117	2.6e-06	EF-hand domain
EF-hand_1	PF00036	130 - 155	6.1e-08	EF hand domain
EF-hand_5	PF13202	132 - 153	8.8e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41860 AT2G41860 AT3G57530 AT3G57530
fragaria_vesca	FvH4_6g23540 FvH4_6g23540
malus_domestica	MD12G1072600.v1.1 MD14G1069700.v1.1
prunus_persica	Prupe.7G064300_v2.0.a1
pyrus_communis	pycom12g06130
rosa_chinensis	RchiOBHm_Chr3g0481541 RchiOBHm_Chr3g0481591
rosa_laevigata	RLG00000023387
rosa_multiflora	Rmu_sc0010846.1_g000001 Rmu_sc0017309.1_g000002 Rmu_sc0019423.1_g000002 Rmu_sc0039298.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400340
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243800 Rh3BG279000 Rh3CG274000 Rh3DG270700
rosa_wichuraiana	Rw3G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	65, 96, 147, 150, 450
AclI	AACGTT	1 cut(s)	372
AclWI	GGATC	2 cut(s)	122, 553
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	5 cut(s)	40, 326, 377, 514, 529
AjiI	CACGTC	1 cut(s)	406
AluBI	AGCT	3 cut(s)	36, 85, 103
AluI	AGCT	3 cut(s)	36, 85, 103
Alw21I	GWGCWC	3 cut(s)	87, 105, 276
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	2 cut(s)	122, 553
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	3 cut(s)	110, 200, 236
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	2 cut(s)	87, 105
BauI	CACGAG	1 cut(s)	501
Bbv12I	GWGCWC	3 cut(s)	87, 105, 276
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	4 cut(s)	197, 250, 416, 536
BcgI	CGANNNNNNTGC	4 cut(s)	271, 305, 428, 462
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	4 cut(s)	147, 150, 153, 450
BlsI	GCNGC	4 cut(s)	148, 151, 154, 451
Bme18I	GGWCC	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	268
Bse8I	GATNNNNATC	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	4 cut(s)	61, 261, 427, 547
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	535
BseRI	GAGGAG	2 cut(s)	347, 455
BseXI	GCAGC	1 cut(s)	139
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	464
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	3 cut(s)	87, 105, 276
BsiSI	CCGG	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	87, 105, 276
Bsp143I	GATC	5 cut(s)	109, 114, 301, 505, 545
BspACI	CCGC	5 cut(s)	65, 96, 147, 150, 450
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	122, 553
BspQI	GCTCTTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	464
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	5 cut(s)	109, 114, 301, 505, 545
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	501
Bst6I	CTCTTC	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	144, 466
BstDEI	CTNAG	4 cut(s)	15, 162, 248, 521
BstF5I	GGATG	4 cut(s)	61, 261, 427, 547
BstKTI	GATC	5 cut(s)	112, 117, 304, 508, 548
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	5 cut(s)	109, 114, 301, 505, 545
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSNI	TACGTA	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	464
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	4 cut(s)	61, 261, 427, 547
Cac8I	GCNNGC	2 cut(s)	144, 466
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	6 cut(s)	36, 85, 103, 233, 353, 464
CviKI_1	RGCY	6 cut(s)	36, 85, 103, 233, 353, 464
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	4 cut(s)	15, 162, 248, 521
DpnI	GATC	5 cut(s)	111, 116, 303, 507, 547
DpnII	GATC	5 cut(s)	109, 114, 301, 505, 545
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	2 cut(s)	85, 103
Eco105I	TACGTA	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	2 cut(s)	87, 105
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	2 cut(s)	85, 103
Eco57I	CTGAAG	1 cut(s)	378
EcoICRI	GAGCTC	2 cut(s)	85, 103
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	2 cut(s)	87, 105
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	1 cut(s)	457
FaiI	YATR	4 cut(s)	51, 80, 219, 455
FatI	CATG	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	147, 150, 153, 450
FokI	GGATG	4 cut(s)	68, 268, 434, 554
FriOI	GRGCYC	2 cut(s)	87, 105
Fsp4HI	GCNGC	4 cut(s)	147, 150, 153, 450
GluI	GCNGC	4 cut(s)	147, 150, 153, 450
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	1 cut(s)	474
Hin1II	CATG	1 cut(s)	457
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	3 cut(s)	110, 200, 236
Hpy166II	GTNNAC	2 cut(s)	70, 244
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	4 cut(s)	123, 212, 356, 501
Hpy8I	GTNNAC	2 cut(s)	70, 244
HpyAV	CCTTC	3 cut(s)	246, 454, 548
HpyCH4IV	ACGT	3 cut(s)	47, 372, 405
HpyCH4V	TGCA	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	4 cut(s)	15, 162, 248, 521
HpySE526I	ACGT	3 cut(s)	47, 372, 405
Hsp92II	CATG	1 cut(s)	457
KroI	GCCGGC	1 cut(s)	464
KroNI	GCCGGC	1 cut(s)	466
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	5 cut(s)	109, 114, 301, 505, 545
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	3 cut(s)	82, 139, 358
LpnPI	CCDG	5 cut(s)	136, 170, 197, 369, 478
Lsp1109I	GCAGC	1 cut(s)	139
MaeII	ACGT	3 cut(s)	47, 372, 405
MaeIII	GTNAC	2 cut(s)	157, 434
MalI	GATC	5 cut(s)	111, 116, 303, 507, 547
MboI	GATC	5 cut(s)	109, 114, 301, 505, 545
MboII	GAAGA	2 cut(s)	97, 389
MhlI	GDGCHC	3 cut(s)	87, 105, 276
MluCI	AATT	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	6 cut(s)	46, 85, 119, 325, 433, 531
MroNI	GCCGGC	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	152
NaeI	GCCGGC	1 cut(s)	466
NdeII	GATC	5 cut(s)	109, 114, 301, 505, 545
NgoMIV	GCCGGC	1 cut(s)	464
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	287
PdiI	GCCGGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	180
PkrI	GCNGC	4 cut(s)	148, 151, 154, 451
Ple19I	CGATCG	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	48
Psp124BI	GAGCTC	2 cut(s)	87, 105
Psp1406I	AACGTT	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacI	GAGCTC	2 cut(s)	87, 105
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	571
SatI	GCNGC	4 cut(s)	147, 150, 153, 450
Sau3AI	GATC	5 cut(s)	109, 114, 301, 505, 545
Sau96I	GGNCC	1 cut(s)	67
SduI	GDGCHC	3 cut(s)	87, 105, 276
SinI	GGWCC	1 cut(s)	67
SnaBI	TACGTA	1 cut(s)	48
Sse9I	AATT	1 cut(s)	530
SsiI	CCGC	5 cut(s)	65, 96, 147, 150, 450
SspI	AATATT	1 cut(s)	28
SstI	GAGCTC	2 cut(s)	87, 105
StyI	CCWWGG	1 cut(s)	348
TaiI	ACGT	3 cut(s)	50, 375, 408
TaqI	TCGA	2 cut(s)	108, 291
TasI	AATT	1 cut(s)	530
TauI	GCSGC	3 cut(s)	149, 152, 452
Tru1I	TTAA	1 cut(s)	571
Tru9I	TTAA	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	17, 473
TspGWI	ACGGA	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.