Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009219

Physical Location & Seq

Genomic Coordinates Forward (+)

17587169 .. 17589671

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGATGGGTTCCAACTCGGGTCCGGGTCATGGTCCGGGTCAGGCAGAGTCGGGTGGTTCCTCCACTGAGTCATCCTCTTTCAGTGGAGGGCTCATGTTTGGCCAGAAGATCTACTTCGAGGACGGTGGTGGTGGATCCGGGTCTTCTTCCTCAGGTGGTCGTTCAAACAGACGTGTCCGTGGAGGCGGGTCGGGTCAGTCGGGTCAGATACCAAGGTGCCAAGTGGAAGGTTGTGGGATGGATCTAACCAATGCAAAAGGTTATTACTCGAGACACCGAGTTTGTGGAGTGCACTCTAAAACACCTAAAGTCACTGTGGCTGGTATCGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATCAGCTTCCGGAATTTGACCTAGAGAAAAGGAGTTGCCGCAGGAGACTCGCTGGTCATAATGAGCGACGAAGGAAGCCACAGCCTGCGTCTCTCTCTGTGTTAGCTTCTCGTTACGGGAGGATCGCACCTTCGCTTTACGAAAATGGTGATGCTGGAATGAATGGAAGCTTTCTTGGGAACCAAGAGATAGGATGGCCAAGTTCAAGAACATTGGATACAAGAGTGATGAGGCGGCCAGTGTCGTCACCGTCATGGCAGATCAATCCAATGAATGTATTTAGTCAAGGTTCAGTTGGTGGAGGAGGGACAAGCTTCTCATCTCCAGAGATTATGGACACTAAACTAGAGAGCTACAAGGGAATTGGCGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCCACATCAACCACATGACAACAACAACAACAACAACAACAACAACAACAACAACAACAATACATGGCGAGCTTCTTCAGGTTTTGGCCCGATGACGGTTACAATGGCTCAACCACCACCTGCACCTAGCCAGCATCAGTATCTGAACCCGCCTTGGGTATTCAAGGACAATGATAATGATATGTCTCCTGTTTTGAATTTAGGTCGATACACCGAGCCAGATAATTGTCAGATAAGTAGTGGCACGGCAATGGGTGAGTTCGAGTTATCTGATCACCATCATCAAAGTAGGAGACAGTACATGGAAGATGAGAACACAAGGGCTTATGACTCTTCTTCTCACCATACCAACTGGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008361 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0042127 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

375

Amino Acids

40.85

Weight (kDa)

8.4

Isoelectric Point (pI)

57.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	74 - 147	9.1e-33	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42200 AT3G57920
fragaria_vesca	FvH4_6g22640 FvH4_6g22640
malus_domestica	MD12G1060200.v1.1 MD14G1060200.v1.1
prunus_persica	Prupe.6G256300_v2.0.a1 Prupe.6G256300_v2.0.a1 Prupe.7G074200_v2.0.a1
pyrus_communis	pycom12g05320 pycom14g04880
rosa_chinensis	RchiOBHm_Chr3g0480201
rosa_laevigata	RLG00000023511
rosa_multiflora	Rmu_co8455867.1_g000001 Rmu_sc0006148.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401710
rosa_rugosa	Rorug03G0181000
rosa_samantha	Rh3AG232800 Rh3BG265400 Rh3CG262600 Rh3DG258600
rosa_wichuraiana	Rw3G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	892
AasI	GACNNNNNNGTC	1 cut(s)	417
Acc36I	ACCTGC	2 cut(s)	348, 892
AccB1I	GGYRCC	1 cut(s)	219
AccIII	TCCGGA	1 cut(s)	373
AciI	CCGC	4 cut(s)	189, 403, 598, 914
AclWI	GGATC	4 cut(s)	132, 145, 252, 494
AcoI	YGGCCR	3 cut(s)	103, 560, 599
AcsI	RAATTY	2 cut(s)	377, 961
AcuI	CTGAAG	1 cut(s)	825
AfaI	GTAC	1 cut(s)	1064
AfiI	CCNNNNNNNGG	3 cut(s)	32, 859, 919
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	168, 570, 928, 961
AjiI	CACGTC	1 cut(s)	176
AluBI	AGCT	6 cut(s)	370, 470, 534, 678, 717, 836
AluI	AGCT	6 cut(s)	370, 470, 534, 678, 717, 836
Alw21I	GWGCWC	2 cut(s)	297, 748
Alw26I	GTCTC	5 cut(s)	268, 403, 459, 954, 1051
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	4 cut(s)	132, 145, 252, 494
AlwNI	CAGNNNCTG	1 cut(s)	907
Ama87I	CYCGRG	2 cut(s)	19, 271
Aor13HI	TCCGGA	1 cut(s)	373
AoxI	GGCC	4 cut(s)	103, 560, 599, 850
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	354
ApoI	RAATTY	2 cut(s)	377, 961
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
AspS9I	GGNCC	3 cut(s)	23, 35, 851
AsuC2I	CCSGG	3 cut(s)	27, 39, 142
AsuHPI	GGTGA	5 cut(s)	524, 603, 1031, 1031, 1097
AvaI	CYCGRG	2 cut(s)	19, 271
AvaII	GGWCC	2 cut(s)	23, 35
AxyI	CCTNAGG	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	297
BaeI	ACNNNNGTAYC	4 cut(s)	203, 236, 573, 606
BalI	TGGCCA	2 cut(s)	105, 562
BamHI	GGATCC	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	297, 748
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	3 cut(s)	235, 552, 1050
BceAI	ACGGC	1 cut(s)	1026
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciVI	GTATCC	1 cut(s)	574
BclI	TGATCA	1 cut(s)	1036
BcnI	CCSGG	3 cut(s)	27, 39, 142
BcoDI	GTCTC	5 cut(s)	268, 403, 459, 954, 1051
BfaI	CTAG	3 cut(s)	386, 710, 891
BfuAI	ACCTGC	2 cut(s)	348, 892
BfuI	GTATCC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	3 cut(s)	355, 403, 599
BlsI	GCNGC	3 cut(s)	356, 404, 600
Bme1390I	CCNGG	3 cut(s)	27, 39, 142
Bme18I	GGWCC	2 cut(s)	23, 35
BmeT110I	CYCGRG	2 cut(s)	19, 271
BmgBI	CACGTC	1 cut(s)	176
BmgT120I	GGNCC	3 cut(s)	23, 35, 851
BmiI	GGNNCC	6 cut(s)	13, 24, 61, 139, 221, 545
BmrFI	CCNGG	3 cut(s)	27, 39, 142
BmsI	GCATC	2 cut(s)	505, 907
BpiI	GAAGAC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	1 cut(s)	672
BpuMI	CCSGG	3 cut(s)	27, 39, 142
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaJI	CCNNGG	3 cut(s)	181, 215, 917
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 859, 919
Bse1I	ACTGG	2 cut(s)	602, 1121
Bse21I	CCTNAGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	1020
Bse8I	GATNNNNATC	1 cut(s)	1041
BseAI	TCCGGA	1 cut(s)	373
BseDI	CCNNGG	3 cut(s)	181, 215, 917
BseGI	GGATG	3 cut(s)	74, 246, 563
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	3 cut(s)	32, 859, 919
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	2 cut(s)	60, 168
BseNI	ACTGG	2 cut(s)	602, 1121
BseRI	GAGGAG	1 cut(s)	681
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	366
BsgI	GTGCAG	2 cut(s)	373, 870
BshFI	GGCC	4 cut(s)	105, 562, 601, 852
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	2 cut(s)	297, 748
BsiHKCI	CYCGRG	2 cut(s)	19, 271
BsiSI	CCGG	4 cut(s)	26, 38, 141, 374
BslFI	GGGAC	1 cut(s)	685
BslI	CCNNNNNNNGG	3 cut(s)	32, 859, 919
BsmAI	GTCTC	5 cut(s)	268, 403, 459, 954, 1051
BsmBI	CGTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	685
BsnI	GGCC	4 cut(s)	105, 562, 601, 852
BsoBI	CYCGRG	2 cut(s)	19, 271
Bsp1286I	GDGCHC	3 cut(s)	96, 297, 748
Bsp13I	TCCGGA	1 cut(s)	373
Bsp143I	GATC	6 cut(s)	111, 137, 244, 486, 624, 1036
BspACI	CCGC	4 cut(s)	189, 403, 598, 914
BspANI	GGCC	4 cut(s)	105, 562, 601, 852
BspCNI	CTCAG	2 cut(s)	61, 167
BspEI	TCCGGA	1 cut(s)	373
BspLI	GGNNCC	6 cut(s)	13, 24, 61, 139, 221, 545
BspMI	ACCTGC	2 cut(s)	348, 892
BspPI	GGATC	4 cut(s)	132, 145, 252, 494
BspT107I	GGYRCC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	1020
BsrI	ACTGG	2 cut(s)	602, 1121
BssECI	CCNNGG	3 cut(s)	181, 215, 917
BssMI	GATC	6 cut(s)	111, 137, 244, 486, 624, 1036
BssT1I	CCWWGG	2 cut(s)	215, 917
Bst4CI	ACNGT	7 cut(s)	128, 319, 351, 615, 743, 862, 1062
Bst6I	CTCTTC	2 cut(s)	759, 1102
BstC8I	GCNNGC	3 cut(s)	450, 834, 896
BstDEI	CTNAG	2 cut(s)	69, 154
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	74, 246, 563
BstKTI	GATC	6 cut(s)	114, 140, 247, 489, 627, 1039
BstMAI	GTCTC	5 cut(s)	268, 403, 459, 954, 1051
BstMBI	GATC	6 cut(s)	111, 137, 244, 486, 624, 1036
BstSCI	CCNGG	3 cut(s)	25, 37, 140
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	3 cut(s)	111, 137, 244
BstYI	RGATCY	3 cut(s)	111, 137, 244
Bsu36I	CCTNAGG	1 cut(s)	154
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	4 cut(s)	105, 562, 601, 852
BtgI	CCRYGG	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	176
BtsCI	GGATG	3 cut(s)	74, 246, 563
BtsIMutI	CAGTG	5 cut(s)	66, 91, 315, 356, 609
BveI	ACCTGC	2 cut(s)	348, 892
Cac8I	GCNNGC	3 cut(s)	450, 834, 896
CaiI	CAGNNNCTG	1 cut(s)	907
Cfr13I	GGNCC	3 cut(s)	23, 35, 851
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	1063
CviAII	CATG	6 cut(s)	32, 97, 618, 779, 828, 1066
CviQI	GTAC	1 cut(s)	1063
DdeI	CTNAG	2 cut(s)	69, 154
DpnI	GATC	6 cut(s)	113, 139, 246, 488, 626, 1038
DpnII	GATC	6 cut(s)	111, 137, 244, 486, 624, 1036
DrdI	GACNNNNNNGTC	1 cut(s)	417
DseDI	GACNNNNNNGTC	1 cut(s)	417
EaeI	YGGCCR	3 cut(s)	103, 560, 599
Eam1104I	CTCTTC	2 cut(s)	759, 1102
EarI	CTCTTC	2 cut(s)	759, 1102
Eco130I	CCWWGG	2 cut(s)	215, 917
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	23, 35
Eco57I	CTGAAG	1 cut(s)	825
Eco81I	CCTNAGG	1 cut(s)	154
Eco88I	CYCGRG	2 cut(s)	19, 271
EcoT14I	CCWWGG	2 cut(s)	215, 917
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	215, 917
Esp3I	CGTCTC	1 cut(s)	459
FaeI	CATG	6 cut(s)	35, 100, 621, 782, 831, 1069
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	6 cut(s)	31, 96, 617, 778, 827, 1065
FauI	CCCGC	2 cut(s)	182, 921
FbaI	TGATCA	1 cut(s)	1036
Fnu4HI	GCNGC	3 cut(s)	355, 403, 599
FokI	GGATG	3 cut(s)	61, 253, 570
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	355, 403, 599
FspBI	CTAG	3 cut(s)	386, 710, 891
GluI	GCNGC	3 cut(s)	355, 403, 599
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	4 cut(s)	105, 562, 601, 852
HapII	CCGG	4 cut(s)	26, 38, 141, 374
HgaI	GACGC	1 cut(s)	441
Hin1II	CATG	6 cut(s)	35, 100, 621, 782, 831, 1069
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HindIII	AAGCTT	2 cut(s)	532, 676
HinfI	GANTC	5 cut(s)	50, 71, 411, 734, 1094
HpaII	CCGG	4 cut(s)	26, 38, 141, 374
HphI	GGTGA	5 cut(s)	524, 603, 1031, 1031, 1097
Hpy166II	GTNNAC	2 cut(s)	295, 347
Hpy188I	TCNGA	5 cut(s)	210, 909, 996, 1036, 1127
Hpy188III	TCNNGA	4 cut(s)	273, 374, 570, 689
Hpy8I	GTNNAC	2 cut(s)	295, 347
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	3 cut(s)	224, 429, 504
HpyCH4III	ACNGT	7 cut(s)	128, 319, 351, 615, 743, 862, 1062
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	257, 295, 354, 887
HpyF3I	CTNAG	2 cut(s)	69, 154
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	6 cut(s)	35, 100, 621, 782, 831, 1069
Kpn2I	TCCGGA	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	1036
Kzo9I	GATC	6 cut(s)	111, 137, 244, 486, 624, 1036
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	2 cut(s)	505, 907
MaeI	CTAG	3 cut(s)	386, 710, 891
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	4 cut(s)	313, 476, 609, 862
MalI	GATC	6 cut(s)	113, 139, 246, 488, 626, 1038
MboI	GATC	6 cut(s)	111, 137, 244, 486, 624, 1036
MboII	GAAGA	8 cut(s)	121, 138, 141, 746, 831, 1082, 1089, 1092
MflI	RGATCY	3 cut(s)	111, 137, 244
MhlI	GDGCHC	3 cut(s)	96, 297, 748
MlsI	TGGCCA	2 cut(s)	105, 562
MluCI	AATT	4 cut(s)	377, 726, 961, 988
MluNI	TGGCCA	2 cut(s)	105, 562
MlyI	GAGTC	5 cut(s)	59, 80, 405, 728, 1088
MmeI	TCCRAC	1 cut(s)	39
Mox20I	TGGCCA	2 cut(s)	105, 562
MroI	TCCGGA	1 cut(s)	373
MscI	TGGCCA	2 cut(s)	105, 562
MslI	CAYNNNNRTG	2 cut(s)	616, 1013
Msp20I	TGGCCA	2 cut(s)	105, 562
MspI	CCGG	4 cut(s)	26, 38, 141, 374
MspR9I	CCNGG	3 cut(s)	27, 39, 142
NciI	CCSGG	3 cut(s)	27, 39, 142
NdeII	GATC	6 cut(s)	111, 137, 244, 486, 624, 1036
NlaIII	CATG	6 cut(s)	35, 100, 621, 782, 831, 1069
NlaIV	GGNNCC	6 cut(s)	13, 24, 61, 139, 221, 545
NmuCI	GTSAC	2 cut(s)	313, 609
PaeR7I	CTCGAG	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	892
PkrI	GCNGC	3 cut(s)	356, 404, 600
PleI	GAGTC	5 cut(s)	58, 79, 405, 728, 1088
PpsI	GAGTC	5 cut(s)	58, 79, 405, 728, 1088
PspN4I	GGNNCC	6 cut(s)	13, 24, 61, 139, 221, 545
PspPI	GGNCC	3 cut(s)	23, 35, 851
PsrI	GAACNNNNNNTAC	2 cut(s)	565, 597
PstNI	CAGNNNCTG	1 cut(s)	907
PsuI	RGATCY	3 cut(s)	111, 137, 244
RsaI	GTAC	1 cut(s)	1064
RsaNI	GTAC	1 cut(s)	1063
RseI	CAYNNNNRTG	2 cut(s)	616, 1013
SatI	GCNGC	3 cut(s)	355, 403, 599
Sau3AI	GATC	6 cut(s)	111, 137, 244, 486, 624, 1036
Sau96I	GGNCC	3 cut(s)	23, 35, 851
SchI	GAGTC	5 cut(s)	59, 80, 405, 728, 1088
ScrFI	CCNGG	3 cut(s)	27, 39, 142
SduI	GDGCHC	3 cut(s)	96, 297, 748
SfaNI	GCATC	2 cut(s)	505, 907
Sfr274I	CTCGAG	1 cut(s)	271
SinI	GGWCC	2 cut(s)	23, 35
SlaI	CTCGAG	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	616, 1013
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	4 cut(s)	377, 726, 961, 988
SsiI	CCGC	4 cut(s)	189, 403, 598, 914
SspMI	CTAG	3 cut(s)	386, 710, 891
StyD4I	CCNGG	3 cut(s)	25, 37, 140
StyI	CCWWGG	2 cut(s)	215, 917
TaaI	ACNGT	7 cut(s)	128, 319, 351, 615, 743, 862, 1062
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	5 cut(s)	120, 272, 330, 970, 1026
TasI	AATT	4 cut(s)	377, 726, 961, 988
TatI	WGTACW	1 cut(s)	1062
TauI	GCSGC	2 cut(s)	405, 601
TscAI	CASTG	5 cut(s)	73, 91, 322, 356, 609
TseFI	GTSAC	2 cut(s)	313, 609
TseI	GCWGC	1 cut(s)	354
Tsp45I	GTSAC	2 cut(s)	313, 609
TspDTI	ATGAA	3 cut(s)	353, 539, 650
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	5 cut(s)	73, 91, 322, 356, 609
VneI	GTGCAC	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	23, 35
XapI	RAATTY	2 cut(s)	377, 961
XhoI	CTCGAG	1 cut(s)	271
XspI	CTAG	3 cut(s)	386, 710, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.