FvH4_6g22640

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
16298674 .. 16302800
4127 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22640.t1

Sequence Viewer

Length: 1203 bp
ATGAGCTTCAGTAAGCGAACGTCTCTTTCTTTCTTTCTTTCTCACTCCTACGGAAAAATAATGGGCTCGACCTCTCTCACTACTACAACAGACTCAGGAGGCAGCTCCTCCTCCTCCCCACCCAACAACAACTCCACCGACGACTCCCTCCACGGCCTCAAATTCGGCCGCAAAATCTACTTCGAGGATGGAACTCTCGCTCCCCCCAAATCCGGGTCTTCCTCCTCCGCCGGGGTCAAGAAGCAGCGGAGCAGCGGCGGCGGTGGGTTCGTCCATCATGGTCAGCCCCCGAGGTGCCAGGTGGAGGGGTGTAACGTAGATCTGAGTGATGTTAAGGCTTACTATTCCCGGCACAAAGTGTGTGCCATGCACTCCAAGACCCCTACCGTTGTTGTTGCCGGACTTGAGCAGCGCTTTTGCCAGCAGTGCAGCAGGTTTCATCAGCTTCCTGAATTTGACCAAGGTAAGCGTAGTTGCCGTAGACGTCTGGCTGGTCATAATGAGCGTAGGAGAAAGCCACAACCTGGATCCATGATGTCTACACGTTTTGGTCGTCTCTCTTCGTCTATTTATGAAAACAGCAACCGGGTTGGAAGCTTTCTAATGGACTTCACGGCATATCCAAGGGATGGGAGAGATGCATGGGCAACTGCAAGAACTTCTGAGCGGCCACCTGCAAATCAAACTGTCACTGCTACTGGAAAGTTTCTTCAACATCAATGGCAGAGCAACCCTGAGAATAATCGATCCAATCTTTACCTGCAAGGGTCAGCAGGTGGTACCAGTTATCCTGGTCCTGGAATTCCTCCGGGAGAATGCGTCACAGGAGTCACTGACTCGAGTTGTGCTCTCTCTCTTCTGTCAAGTCAACCGTGGGCCTCTAGAAACCGAGGTGTTGGGACAAATGCCTTCTTAAACACCCAAGGGGCACCCATGGCTCAATCAATATCTAATGCTGGCCCTGTCAATCCATTTCCAACCACATCCTGGGGTTTTAAGGGAAATGAGGCTGGTAGTAGTTCGCATGAGATGCTTCCTGATCTGGGTCTTGGTCAAATCTCGCAGCCCCTTAACAGTCATTACTCTGGTGAGCTCGAGTTGTCTCAACAGGGAAGGAGGCAGCAAAATATGGAGCTTGGAAACTCCAGGGGTTACTCCAGGGGCTATGACTCCTCCAGTCAGCAGATTCATTGGTCTCTTTAA

Protein Analysis

401

Amino Acids

43.34

Weight (kDa)

9.63

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 99 - 172 1.8e-33 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 682, 764
AatII GACGTC 1 cut(s) 487
Acc36I ACCTGC 4 cut(s) 423, 682, 764, 768
Acc65I GGTACC 1 cut(s) 779
AccB1I GGYRCC 3 cut(s) 294, 779, 928
AccB7I CCANNNNNTGG 3 cut(s) 524, 629, 987
AccBSI CCGCTC 1 cut(s) 667
AccI GTMKAC 2 cut(s) 481, 539
AciI CCGC 7 cut(s) 169, 228, 247, 255, 258, 261, 667
AclWI GGATC 3 cut(s) 522, 535, 741
AcoI YGGCCR 2 cut(s) 166, 668
AcsI RAATTY 3 cut(s) 161, 452, 801
AcyI GRCGYC 1 cut(s) 484
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 1 cut(s) 781
AfeI AGCGCT 1 cut(s) 413
AfiI CCNNNNNNNGG 9 cut(s) 212, 213, 231, 304, 524, 629, 797, 987, 1043
AflIII ACRYGT 1 cut(s) 542
AgsI TTSAA 1 cut(s) 713
AjnI CCWGG 7 cut(s) 297, 523, 790, 796, 986, 1145, 1157
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AluBI AGCT 6 cut(s) 6, 105, 445, 597, 1093, 1135
AluI AGCT 6 cut(s) 6, 105, 445, 597, 1093, 1135
Alw21I GWGCWC 2 cut(s) 850, 1095
Alw26I GTCTC 3 cut(s) 27, 560, 1107
AlwI GGATC 3 cut(s) 522, 535, 741
Ama87I CYCGRG 3 cut(s) 289, 838, 1094
Aor51HI AGCGCT 1 cut(s) 413
AoxI GGCC 5 cut(s) 154, 166, 668, 876, 958
ApeKI GCWGC 7 cut(s) 102, 244, 252, 409, 429, 1063, 1120
ApoI RAATTY 3 cut(s) 161, 452, 801
Asp718I GGTACC 1 cut(s) 779
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 3 cut(s) 794, 876, 959
AsuC2I CCSGG 5 cut(s) 214, 232, 349, 587, 810
AsuHPI GGTGA 1 cut(s) 1100
AvaI CYCGRG 3 cut(s) 289, 838, 1094
AvaII GGWCC 1 cut(s) 794
BaeGI GKGCMC 1 cut(s) 931
BamHI GGATCC 1 cut(s) 527
BanI GGYRCC 3 cut(s) 294, 779, 928
BanII GRGCYC 2 cut(s) 68, 1095
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 2 cut(s) 850, 1095
BbvI GCAGC 7 cut(s) 114, 256, 264, 421, 441, 1075, 1132
BccI CCATC 3 cut(s) 182, 282, 623
BceAI ACGGC 3 cut(s) 169, 462, 630
BciT130I CCWGG 7 cut(s) 299, 525, 792, 798, 988, 1147, 1159
BcnI CCSGG 5 cut(s) 214, 232, 349, 587, 810
BcoDI GTCTC 3 cut(s) 27, 560, 1107
BfaI CTAG 1 cut(s) 882
BfoI RGCGCY 1 cut(s) 415
BfuAI ACCTGC 4 cut(s) 423, 682, 764, 768
BglII AGATCT 1 cut(s) 319
Bme18I GGWCC 1 cut(s) 794
BmeT110I CYCGRG 3 cut(s) 289, 838, 1094
BmgT120I GGNCC 3 cut(s) 794, 876, 959
BmiI GGNNCC 4 cut(s) 296, 529, 781, 930
BmsI GCATC 2 cut(s) 628, 1020
BpiI GAAGAC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 832, 864
BpmI CTGGAG 3 cut(s) 1129, 1141, 1159
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 5 cut(s) 214, 232, 349, 587, 810
Bsa29I ATCGAT 1 cut(s) 745
BsaHI GRCGYC 1 cut(s) 484
BsaXI ACNNNNNCTCC 6 cut(s) 116, 146, 184, 214, 804, 834
Bsc4I CCNNNNNNNGG 9 cut(s) 212, 213, 231, 304, 524, 629, 797, 987, 1043
Bse1I ACTGG 3 cut(s) 703, 783, 1176
BseBI CCWGG 7 cut(s) 299, 525, 792, 798, 988, 1147, 1159
BseCI ATCGAT 1 cut(s) 745
BseGI GGATG 3 cut(s) 193, 634, 983
BseLI CCNNNNNNNGG 9 cut(s) 212, 213, 231, 304, 524, 629, 797, 987, 1043
BseMII CTCAG 4 cut(s) 108, 314, 654, 726
BseNI ACTGG 3 cut(s) 703, 783, 1176
BseRI GAGGAG 5 cut(s) 97, 100, 103, 214, 1162
BseSI GKGCMC 1 cut(s) 931
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 7 cut(s) 114, 256, 264, 421, 441, 1075, 1132
BsgI GTGCAG 1 cut(s) 448
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 5 cut(s) 156, 168, 670, 878, 960
BshNI GGYRCC 3 cut(s) 294, 779, 928
BshVI ATCGAT 1 cut(s) 745
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 850, 1095
BsiHKCI CYCGRG 3 cut(s) 289, 838, 1094
BsiSI CCGG 6 cut(s) 213, 231, 349, 399, 586, 809
BslFI GGGAC 1 cut(s) 913
BslI CCNNNNNNNGG 9 cut(s) 212, 213, 231, 304, 524, 629, 797, 987, 1043
BsmAI GTCTC 3 cut(s) 27, 560, 1107
BsmBI CGTCTC 2 cut(s) 27, 560
BsmFI GGGAC 1 cut(s) 913
BsmI GAATGC 1 cut(s) 821
BsnI GGCC 5 cut(s) 156, 168, 670, 878, 960
BsoBI CYCGRG 3 cut(s) 289, 838, 1094
Bsp1286I GDGCHC 4 cut(s) 68, 850, 931, 1095
Bsp143I GATC 4 cut(s) 319, 527, 746, 1039
Bsp19I CCATGG 1 cut(s) 933
BspACI CCGC 7 cut(s) 169, 228, 247, 255, 258, 261, 667
BspANI GGCC 5 cut(s) 156, 168, 670, 878, 960
BspCNI CTCAG 4 cut(s) 107, 315, 655, 727
BspDI ATCGAT 1 cut(s) 745
BspLI GGNNCC 4 cut(s) 296, 529, 781, 930
BspMI ACCTGC 4 cut(s) 423, 682, 764, 768
BspPI GGATC 3 cut(s) 522, 535, 741
BspT107I GGYRCC 3 cut(s) 294, 779, 928
BsrBI CCGCTC 1 cut(s) 667
BsrI ACTGG 3 cut(s) 703, 783, 1176
BssMI GATC 4 cut(s) 319, 527, 746, 1039
BssNI GRCGYC 1 cut(s) 484
BssT1I CCWWGG 4 cut(s) 460, 623, 922, 933
Bst2UI CCWGG 7 cut(s) 299, 525, 792, 798, 988, 1147, 1159
Bst4CI ACNGT 4 cut(s) 388, 688, 873, 1076
Bst6I CTCTTC 2 cut(s) 565, 861
BstACI GRCGYC 1 cut(s) 484
BstAPI GCANNNNNTGC 1 cut(s) 1030
BstC8I GCNNGC 2 cut(s) 422, 958
BstDEI CTNAG 4 cut(s) 94, 323, 663, 735
BstDSI CCRYGG 3 cut(s) 151, 872, 933
BstF5I GGATG 3 cut(s) 193, 634, 983
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 1 cut(s) 414
BstKTI GATC 4 cut(s) 322, 530, 749, 1042
BstMAI GTCTC 3 cut(s) 27, 560, 1107
BstMBI GATC 4 cut(s) 319, 527, 746, 1039
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 4 cut(s) 258, 426, 935, 1030
BstNI CCWGG 7 cut(s) 299, 525, 792, 798, 988, 1147, 1159
BstSLI GKGCMC 1 cut(s) 931
BstV1I GCAGC 7 cut(s) 114, 256, 264, 421, 441, 1075, 1132
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 319, 527
BstYI RGATCY 2 cut(s) 319, 527
BstZI CGGCCG 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 745
BsuRI GGCC 5 cut(s) 156, 168, 670, 878, 960
BsuTUI ATCGAT 1 cut(s) 745
BtgI CCRYGG 3 cut(s) 151, 872, 933
BtsCI GGATG 3 cut(s) 193, 634, 983
BtsI GCAGTG 2 cut(s) 431, 690
BtsIMutI CAGTG 3 cut(s) 431, 690, 831
BveI ACCTGC 4 cut(s) 423, 682, 764, 768
Cac8I GCNNGC 2 cut(s) 422, 958
CfoI GCGC 1 cut(s) 414
Cfr13I GGNCC 3 cut(s) 794, 876, 959
ClaI ATCGAT 1 cut(s) 745
CseI GACGC 1 cut(s) 808
Csp6I GTAC 1 cut(s) 780
CviAII CATG 6 cut(s) 278, 367, 532, 642, 934, 1025
CviQI GTAC 1 cut(s) 780
DdeI CTNAG 4 cut(s) 94, 323, 663, 735
DpnI GATC 4 cut(s) 321, 529, 748, 1041
DpnII GATC 4 cut(s) 319, 527, 746, 1039
DraIII CACNNNGTG 1 cut(s) 358
EaeI YGGCCR 2 cut(s) 166, 668
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 565, 861
EarI CTCTTC 2 cut(s) 565, 861
EciI GGCGGA 1 cut(s) 217
Ecl136II GAGCTC 1 cut(s) 1093
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 4 cut(s) 460, 623, 922, 933
Eco24I GRGCYC 2 cut(s) 68, 1095
Eco47I GGWCC 1 cut(s) 794
Eco47III AGCGCT 1 cut(s) 413
Eco52I CGGCCG 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 1093
Eco88I CYCGRG 3 cut(s) 289, 838, 1094
EcoICRI GAGCTC 1 cut(s) 1093
EcoRI GAATTC 1 cut(s) 801
EcoRII CCWGG 7 cut(s) 297, 523, 790, 796, 986, 1145, 1157
EcoT14I CCWWGG 4 cut(s) 460, 623, 922, 933
EcoT22I ATGCAT 1 cut(s) 643
EcoT38I GRGCYC 2 cut(s) 68, 1095
ErhI CCWWGG 4 cut(s) 460, 623, 922, 933
Esp3I CGTCTC 2 cut(s) 27, 560
FaeI CATG 6 cut(s) 281, 370, 535, 645, 937, 1028
FaqI GGGAC 1 cut(s) 913
FatI CATG 6 cut(s) 277, 366, 531, 641, 933, 1024
FblI GTMKAC 2 cut(s) 481, 539
FokI GGATG 3 cut(s) 200, 641, 970
FriOI GRGCYC 2 cut(s) 68, 1095
FspBI CTAG 1 cut(s) 882
GlaI GCGC 1 cut(s) 413
GsuI CTGGAG 3 cut(s) 1129, 1141, 1159
HaeII RGCGCY 1 cut(s) 415
HaeIII GGCC 5 cut(s) 156, 168, 670, 878, 960
HapII CCGG 6 cut(s) 213, 231, 349, 399, 586, 809
HgaI GACGC 1 cut(s) 808
HhaI GCGC 1 cut(s) 414
Hin1I GRCGYC 1 cut(s) 484
Hin1II CATG 6 cut(s) 281, 370, 535, 645, 937, 1028
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HincII GTYRAC 1 cut(s) 869
HindII GTYRAC 1 cut(s) 869
HindIII AAGCTT 1 cut(s) 595
HinfI GANTC 6 cut(s) 92, 143, 828, 836, 1169, 1186
HpaII CCGG 6 cut(s) 213, 231, 349, 399, 586, 809
HphI GGTGA 1 cut(s) 1100
Hpy166II GTNNAC 3 cut(s) 482, 540, 869
Hpy188I TCNGA 2 cut(s) 324, 664
Hpy188III TCNNGA 5 cut(s) 96, 238, 449, 882, 1037
Hpy8I GTNNAC 3 cut(s) 482, 540, 869
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 919, 1107
HpyCH4III ACNGT 4 cut(s) 388, 688, 873, 1076
HpyCH4IV ACGT 4 cut(s) 20, 315, 484, 544
HpyCH4V TGCA 6 cut(s) 370, 429, 641, 653, 677, 763
HpyF10VI GCNNNNNNNGC 4 cut(s) 258, 426, 935, 1030
HpyF3I CTNAG 4 cut(s) 94, 323, 663, 735
HpySE526I ACGT 4 cut(s) 20, 315, 484, 544
Hsp92I GRCGYC 1 cut(s) 484
Hsp92II CATG 6 cut(s) 281, 370, 535, 645, 937, 1028
HspAI GCGC 1 cut(s) 412
KpnI GGTACC 1 cut(s) 783
Kzo9I GATC 4 cut(s) 319, 527, 746, 1039
LmnI GCTCC 4 cut(s) 110, 205, 249, 1132
Lsp1109I GCAGC 7 cut(s) 114, 256, 264, 421, 441, 1075, 1132
LweI GCATC 2 cut(s) 628, 1020
MaeI CTAG 1 cut(s) 882
MaeII ACGT 4 cut(s) 20, 315, 484, 544
MaeIII GTNAC 5 cut(s) 311, 688, 820, 829, 1151
MalI GATC 4 cut(s) 321, 529, 748, 1041
MbiI CCGCTC 1 cut(s) 667
MboI GATC 4 cut(s) 319, 527, 746, 1039
MboII GAAGA 4 cut(s) 210, 552, 701, 848
MflI RGATCY 2 cut(s) 319, 527
MhlI GDGCHC 4 cut(s) 68, 850, 931, 1095
MluCI AATT 3 cut(s) 161, 452, 801
MlyI GAGTC 5 cut(s) 86, 137, 830, 837, 1163
MmeI TCCRAC 2 cut(s) 571, 1001
Mph1103I ATGCAT 1 cut(s) 643
MseI TTAA 5 cut(s) 333, 914, 996, 1071, 1201
MspA1I CMGCKG 2 cut(s) 247, 255
MspI CCGG 6 cut(s) 213, 231, 349, 399, 586, 809
Mva1269I GAATGC 1 cut(s) 821
MvaI CCWGG 7 cut(s) 299, 525, 792, 798, 988, 1147, 1159
MwoI GCNNNNNNNGC 4 cut(s) 258, 426, 935, 1030
NciI CCSGG 5 cut(s) 214, 232, 349, 587, 810
NcoI CCATGG 1 cut(s) 933
NdeII GATC 4 cut(s) 319, 527, 746, 1039
NlaIII CATG 6 cut(s) 281, 370, 535, 645, 937, 1028
NlaIV GGNNCC 4 cut(s) 296, 529, 781, 930
NmuCI GTSAC 3 cut(s) 688, 820, 829
NsiI ATGCAT 1 cut(s) 643
PaeR7I CTCGAG 2 cut(s) 838, 1094
PaqCI CACCTGC 2 cut(s) 682, 764
PcsI WCGNNNNNNNCGW 1 cut(s) 550
PctI GAATGC 1 cut(s) 821
PfeI GAWTC 1 cut(s) 1186
PflMI CCANNNNNTGG 3 cut(s) 524, 629, 987
PfoI TCCNGGA 2 cut(s) 796, 808
PleI GAGTC 5 cut(s) 86, 137, 830, 836, 1163
PpsI GAGTC 5 cut(s) 86, 137, 830, 836, 1163
Psp124BI GAGCTC 1 cut(s) 1095
Psp6I CCWGG 7 cut(s) 297, 523, 790, 796, 986, 1145, 1157
PspGI CCWGG 7 cut(s) 297, 523, 790, 796, 986, 1145, 1157
PspN4I GGNNCC 4 cut(s) 296, 529, 781, 930
PspPI GGNCC 3 cut(s) 794, 876, 959
PspXI VCTCGAGB 2 cut(s) 838, 1094
PsuI RGATCY 2 cut(s) 319, 527
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
SacI GAGCTC 1 cut(s) 1095
SaqAI TTAA 5 cut(s) 333, 914, 996, 1071, 1201
Sau3AI GATC 4 cut(s) 319, 527, 746, 1039
Sau96I GGNCC 3 cut(s) 794, 876, 959
SchI GAGTC 5 cut(s) 86, 137, 830, 837, 1163
SduI GDGCHC 4 cut(s) 68, 850, 931, 1095
SfaNI GCATC 2 cut(s) 628, 1020
Sfr274I CTCGAG 2 cut(s) 838, 1094
SinI GGWCC 1 cut(s) 794
SlaI CTCGAG 2 cut(s) 838, 1094
SmlI CTYRAG 3 cut(s) 404, 838, 1094
SmoI CTYRAG 3 cut(s) 404, 838, 1094
Sse9I AATT 3 cut(s) 161, 452, 801
SsiI CCGC 7 cut(s) 169, 228, 247, 255, 258, 261, 667
SspMI CTAG 1 cut(s) 882
SstI GAGCTC 1 cut(s) 1095
StyI CCWWGG 4 cut(s) 460, 623, 922, 933
TaaI ACNGT 4 cut(s) 388, 688, 873, 1076
TaiI ACGT 4 cut(s) 23, 318, 487, 547
TaqI TCGA 5 cut(s) 68, 183, 745, 839, 1095
TasI AATT 3 cut(s) 161, 452, 801
TauI GCSGC 4 cut(s) 171, 258, 261, 670
TfiI GAWTC 1 cut(s) 1186
Tru1I TTAA 5 cut(s) 333, 914, 996, 1071, 1201
Tru9I TTAA 5 cut(s) 333, 914, 996, 1071, 1201
TscAI CASTG 3 cut(s) 431, 697, 838
TseFI GTSAC 3 cut(s) 688, 820, 829
TseI GCWGC 7 cut(s) 102, 244, 252, 409, 429, 1063, 1120
Tsp45I GTSAC 3 cut(s) 688, 820, 829
TspDTI ATGAA 3 cut(s) 428, 588, 1178
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 3 cut(s) 431, 697, 838
Van91I CCANNNNNTGG 3 cut(s) 524, 629, 987
VpaK11BI GGWCC 1 cut(s) 794
XapI RAATTY 3 cut(s) 161, 452, 801
XbaI TCTAGA 1 cut(s) 881
XcmI CCANNNNNNNNNTGG 1 cut(s) 984
XhoI CTCGAG 2 cut(s) 838, 1094
XmiI GTMKAC 2 cut(s) 481, 539
XspI CTAG 1 cut(s) 882
ZraI GACGTC 1 cut(s) 485
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.