Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8455867.1

Orthogroup ID

OG0009219

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1614

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8455867.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 757 bp

atttcatcagcttcctgaatttgaccaagggaaacgtagttgccgtagacgtctggctggtcataatgagcgtaggagaaagccacaacctggatccatgatgtctacacgttttggccgtctctcttcgtctatttatgaaaacaccagccgagttggaagctttctgatggacttcaccgcatacccaagggctgggagagatgaatgggcaactgcaagaacttgtgagcggccacctggaaatcaaactgtcactgccacaggaaagtttcttcaacatccatggcagagcaaccctgagaatactcgatctgatctttacctgcaagggtcagccggtggtaccagttatcctggtcctggaattcctccgggagaatgcgtctcaggagtcaccgactcgagctgtgctctctctcttctgtcaaatcaaccatgggactctagaaaccgcggtgttgggacaaatgccttcataaacacccaaggggcacccgtggctcaatcaatagctaatgttggcaccatcaatccatttccaaccacgtcatggggtttcaagggaaatgaggctggtagcagttcgcatcagatgcttcctgatctgggtcttggtcaaatttcgcagcctcataacagtcattactctagtgagctcgagttgtctcaacagggtaggaggcagcaaaatatggaacttggaaactccaggggctacgactcctccagtcaacacatgaattggtctctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008361 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0042127 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

251

Amino Acids

27.52

Weight (kDa)

9.23

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42200 AT3G57920
fragaria_vesca	FvH4_6g22640 FvH4_6g22640
malus_domestica	MD12G1060200.v1.1 MD14G1060200.v1.1
prunus_persica	Prupe.6G256300_v2.0.a1 Prupe.6G256300_v2.0.a1 Prupe.7G074200_v2.0.a1
pyrus_communis	pycom12g05320 pycom14g04880
rosa_chinensis	RchiOBHm_Chr3g0480201
rosa_laevigata	RLG00000023511
rosa_multiflora	Rmu_co8455867.1_g000001 Rmu_sc0006148.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401710
rosa_rugosa	Rorug03G0181000
rosa_samantha	Rh3AG232800 Rh3BG265400 Rh3CG262600 Rh3DG258600
rosa_wichuraiana	Rw3G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	334
Acc65I	GGTACC	1 cut(s)	345
AccB1I	GGYRCC	3 cut(s)	345, 494, 525
AccB7I	CCANNNNNTGG	3 cut(s)	90, 195, 553
AccBSI	CCGCTC	1 cut(s)	233
AccI	GTMKAC	2 cut(s)	47, 105
AccII	CGCG	1 cut(s)	457
AciI	CCGC	4 cut(s)	181, 233, 455, 457
AclWI	GGATC	2 cut(s)	88, 101
AcoI	YGGCCR	2 cut(s)	116, 234
AcsI	RAATTY	3 cut(s)	18, 367, 622
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	5 cut(s)	90, 195, 363, 553, 609
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	279, 563
AjiI	CACGTC	1 cut(s)	550
AjnI	CCWGG	5 cut(s)	89, 239, 356, 362, 711
AluBI	AGCT	5 cut(s)	11, 163, 409, 516, 659
AluI	AGCT	5 cut(s)	11, 163, 409, 516, 659
Alw21I	GWGCWC	2 cut(s)	416, 661
Alw26I	GTCTC	3 cut(s)	126, 392, 673
AlwI	GGATC	2 cut(s)	88, 101
Ama87I	CYCGRG	2 cut(s)	404, 660
AoxI	GGCC	2 cut(s)	116, 234
ApeKI	GCWGC	2 cut(s)	629, 686
ApoI	RAATTY	3 cut(s)	18, 367, 622
Asp718I	GGTACC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	170, 389
AvaI	CYCGRG	2 cut(s)	404, 660
AvaII	GGWCC	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	93
BanI	GGYRCC	3 cut(s)	345, 494, 525
BanII	GRGCYC	1 cut(s)	661
Bbv12I	GWGCWC	2 cut(s)	416, 661
BbvI	GCAGC	2 cut(s)	641, 698
BccI	CCATC	2 cut(s)	164, 537
BceAI	ACGGC	2 cut(s)	28, 103
BciT130I	CCWGG	5 cut(s)	91, 241, 358, 364, 713
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	3 cut(s)	126, 392, 673
BfaI	CTAG	2 cut(s)	448, 652
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	3 cut(s)	234, 630, 687
BlsI	GCNGC	3 cut(s)	235, 631, 688
Bme1390I	CCNGG	6 cut(s)	91, 241, 358, 364, 376, 713
Bme18I	GGWCC	1 cut(s)	360
BmeT110I	CYCGRG	2 cut(s)	404, 660
BmgBI	CACGTC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	4 cut(s)	95, 347, 496, 527
BmrFI	CCNGG	6 cut(s)	91, 241, 358, 364, 376, 713
BmsI	GCATC	2 cut(s)	586, 599
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	2 cut(s)	695, 713
BpuMI	CCSGG	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	8 cut(s)	26, 189, 285, 438, 455, 488, 499, 712
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 711, 741
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 195, 363, 553, 609
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	2 cut(s)	349, 730
BseBI	CCWGG	5 cut(s)	91, 241, 358, 364, 713
BseDI	CCNNGG	8 cut(s)	26, 189, 285, 438, 455, 488, 499, 712
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	5 cut(s)	90, 195, 363, 553, 609
BseMII	CTCAG	2 cut(s)	292, 403
BseNI	ACTGG	2 cut(s)	349, 730
BseRI	GAGGAG	1 cut(s)	716
BseSI	GKGCMC	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	641, 698
BseYI	CCCAGC	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	457
BshFI	GGCC	2 cut(s)	118, 236
BshNI	GGYRCC	3 cut(s)	345, 494, 525
BsiHKAI	GWGCWC	2 cut(s)	416, 661
BsiHKCI	CYCGRG	2 cut(s)	404, 660
BsiSI	CCGG	2 cut(s)	340, 375
BslFI	GGGAC	2 cut(s)	456, 479
BslI	CCNNNNNNNGG	5 cut(s)	90, 195, 363, 553, 609
BsmAI	GTCTC	3 cut(s)	126, 392, 673
BsmBI	CGTCTC	2 cut(s)	126, 392
BsmFI	GGGAC	2 cut(s)	456, 479
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	118, 236
BsoBI	CYCGRG	2 cut(s)	404, 660
Bsp1286I	GDGCHC	3 cut(s)	416, 497, 661
Bsp143I	GATC	4 cut(s)	93, 312, 317, 605
Bsp19I	CCATGG	2 cut(s)	285, 438
BspACI	CCGC	4 cut(s)	181, 233, 455, 457
BspANI	GGCC	2 cut(s)	118, 236
BspCNI	CTCAG	2 cut(s)	293, 402
BspFNI	CGCG	1 cut(s)	457
BspLI	GGNNCC	4 cut(s)	95, 347, 496, 527
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	2 cut(s)	88, 101
BspT107I	GGYRCC	3 cut(s)	345, 494, 525
BsrBI	CCGCTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	349, 730
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	8 cut(s)	26, 189, 285, 438, 455, 488, 499, 712
BssMI	GATC	4 cut(s)	93, 312, 317, 605
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	5 cut(s)	26, 189, 285, 438, 488
Bst2UI	CCWGG	5 cut(s)	91, 241, 358, 364, 713
Bst4CI	ACNGT	2 cut(s)	254, 642
Bst6I	CTCTTC	2 cut(s)	131, 427
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstDEI	CTNAG	2 cut(s)	301, 389
BstDSI	CCRYGG	4 cut(s)	285, 438, 455, 499
BstF5I	GGATG	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	457
BstKTI	GATC	4 cut(s)	96, 315, 320, 608
BstMAI	GTCTC	3 cut(s)	126, 392, 673
BstMBI	GATC	4 cut(s)	93, 312, 317, 605
BstMWI	GCNNNNNNNGC	2 cut(s)	501, 596
BstNI	CCWGG	5 cut(s)	91, 241, 358, 364, 713
BstSCI	CCNGG	6 cut(s)	89, 239, 356, 362, 374, 711
BstSLI	GKGCMC	1 cut(s)	497
BstUI	CGCG	1 cut(s)	457
BstV1I	GCAGC	2 cut(s)	641, 698
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	118, 236
BtgI	CCRYGG	4 cut(s)	285, 438, 455, 499
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	360
Cfr42I	CCGCGG	1 cut(s)	458
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	5 cut(s)	98, 286, 439, 553, 740
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	301, 389
DpnI	GATC	4 cut(s)	95, 314, 319, 607
DpnII	GATC	4 cut(s)	93, 312, 317, 605
EaeI	YGGCCR	2 cut(s)	116, 234
Eam1104I	CTCTTC	2 cut(s)	131, 427
EarI	CTCTTC	2 cut(s)	131, 427
Ecl136II	GAGCTC	1 cut(s)	659
Eco130I	CCWWGG	5 cut(s)	26, 189, 285, 438, 488
Eco24I	GRGCYC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	659
Eco88I	CYCGRG	2 cut(s)	404, 660
EcoICRI	GAGCTC	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	5 cut(s)	89, 239, 356, 362, 711
EcoT14I	CCWWGG	5 cut(s)	26, 189, 285, 438, 488
EcoT38I	GRGCYC	1 cut(s)	661
ErhI	CCWWGG	5 cut(s)	26, 189, 285, 438, 488
Esp3I	CGTCTC	2 cut(s)	126, 392
FaeI	CATG	5 cut(s)	101, 289, 442, 556, 743
FaqI	GGGAC	2 cut(s)	456, 479
FatI	CATG	5 cut(s)	97, 285, 438, 552, 739
FblI	GTMKAC	2 cut(s)	47, 105
Fnu4HI	GCNGC	3 cut(s)	234, 630, 687
FokI	GGATG	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	661
Fsp4HI	GCNGC	3 cut(s)	234, 630, 687
FspBI	CTAG	2 cut(s)	448, 652
GluI	GCNGC	3 cut(s)	234, 630, 687
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	2 cut(s)	695, 713
HaeIII	GGCC	2 cut(s)	118, 236
HapII	CCGG	2 cut(s)	340, 375
HgaI	GACGC	1 cut(s)	374
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	5 cut(s)	101, 289, 442, 556, 743
HincII	GTYRAC	1 cut(s)	735
HindII	GTYRAC	1 cut(s)	735
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	4 cut(s)	394, 402, 444, 723
HpaII	CCGG	2 cut(s)	340, 375
HphI	GGTGA	2 cut(s)	170, 389
Hpy166II	GTNNAC	3 cut(s)	48, 106, 735
Hpy188I	TCNGA	3 cut(s)	169, 317, 595
Hpy188III	TCNNGA	4 cut(s)	15, 391, 448, 603
Hpy8I	GTNNAC	3 cut(s)	48, 106, 735
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	2 cut(s)	254, 642
HpyCH4IV	ACGT	4 cut(s)	35, 50, 110, 549
HpyCH4V	TGCA	2 cut(s)	219, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	501, 596
HpyF3I	CTNAG	2 cut(s)	301, 389
HpySE526I	ACGT	4 cut(s)	35, 50, 110, 549
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	5 cut(s)	101, 289, 442, 556, 743
KpnI	GGTACC	1 cut(s)	349
KspI	CCGCGG	1 cut(s)	458
Kzo9I	GATC	4 cut(s)	93, 312, 317, 605
Lsp1109I	GCAGC	2 cut(s)	641, 698
LweI	GCATC	2 cut(s)	586, 599
MaeI	CTAG	2 cut(s)	448, 652
MaeII	ACGT	4 cut(s)	35, 50, 110, 549
MaeIII	GTNAC	2 cut(s)	254, 395
MalI	GATC	4 cut(s)	95, 314, 319, 607
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	4 cut(s)	93, 312, 317, 605
MboII	GAAGA	3 cut(s)	118, 267, 414
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	3 cut(s)	416, 497, 661
MluCI	AATT	4 cut(s)	18, 367, 622, 743
MlyI	GAGTC	4 cut(s)	396, 403, 438, 717
MmeI	TCCRAC	2 cut(s)	137, 567
MnlI	CCTC	5 cut(s)	382, 566, 643, 676, 737
MseI	TTAA	1 cut(s)	755
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	2 cut(s)	340, 375
MspR9I	CCNGG	6 cut(s)	91, 241, 358, 364, 376, 713
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	5 cut(s)	91, 241, 358, 364, 713
MvnI	CGCG	1 cut(s)	457
MwoI	GCNNNNNNNGC	2 cut(s)	501, 596
NciI	CCSGG	1 cut(s)	376
NcoI	CCATGG	2 cut(s)	285, 438
NdeII	GATC	4 cut(s)	93, 312, 317, 605
NlaIII	CATG	5 cut(s)	101, 289, 442, 556, 743
NlaIV	GGNNCC	4 cut(s)	95, 347, 496, 527
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	254, 395
PaeR7I	CTCGAG	2 cut(s)	404, 660
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 116
PctI	GAATGC	1 cut(s)	387
PflMI	CCANNNNNTGG	3 cut(s)	90, 195, 553
PfoI	TCCNGGA	2 cut(s)	362, 374
PkrI	GCNGC	3 cut(s)	235, 631, 688
PleI	GAGTC	4 cut(s)	396, 402, 438, 717
PpsI	GAGTC	4 cut(s)	396, 402, 438, 717
Psp124BI	GAGCTC	1 cut(s)	661
Psp6I	CCWGG	5 cut(s)	89, 239, 356, 362, 711
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	5 cut(s)	89, 239, 356, 362, 711
PspN4I	GGNNCC	4 cut(s)	95, 347, 496, 527
PspPI	GGNCC	1 cut(s)	360
PspXI	VCTCGAGB	2 cut(s)	404, 660
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	661
SacII	CCGCGG	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	755
SatI	GCNGC	3 cut(s)	234, 630, 687
Sau3AI	GATC	4 cut(s)	93, 312, 317, 605
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	4 cut(s)	396, 403, 438, 717
ScrFI	CCNGG	6 cut(s)	91, 241, 358, 364, 376, 713
SduI	GDGCHC	3 cut(s)	416, 497, 661
SfaNI	GCATC	2 cut(s)	586, 599
Sfr274I	CTCGAG	2 cut(s)	404, 660
Sfr303I	CCGCGG	1 cut(s)	458
SgrBI	CCGCGG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	360
SlaI	CTCGAG	2 cut(s)	404, 660
SmlI	CTYRAG	2 cut(s)	404, 660
SmoI	CTYRAG	2 cut(s)	404, 660
Sse9I	AATT	4 cut(s)	18, 367, 622, 743
SsiI	CCGC	4 cut(s)	181, 233, 455, 457
SspMI	CTAG	2 cut(s)	448, 652
SstI	GAGCTC	1 cut(s)	661
StyD4I	CCNGG	6 cut(s)	89, 239, 356, 362, 374, 711
StyI	CCWWGG	5 cut(s)	26, 189, 285, 438, 488
TaaI	ACNGT	2 cut(s)	254, 642
TaiI	ACGT	4 cut(s)	38, 53, 113, 552
TaqI	TCGA	3 cut(s)	311, 405, 661
TasI	AATT	4 cut(s)	18, 367, 622, 743
TauI	GCSGC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	755
Tru9I	TTAA	1 cut(s)	755
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	2 cut(s)	254, 395
TseI	GCWGC	2 cut(s)	629, 686
Tsp45I	GTSAC	2 cut(s)	254, 395
TspDTI	ATGAA	4 cut(s)	154, 220, 467, 756
TspRI	CASTG	1 cut(s)	263
Van91I	CCANNNNNTGG	3 cut(s)	90, 195, 553
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	3 cut(s)	18, 367, 622
XbaI	TCTAGA	1 cut(s)	447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XhoI	CTCGAG	2 cut(s)	404, 660
XmiI	GTMKAC	2 cut(s)	47, 105
XspI	CTAG	2 cut(s)	448, 652
ZraI	GACGTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.