Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009219

Physical Location & Seq

Genomic Coordinates Reverse (-)

21444243 .. 21446035

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGTTGTTAATGTGTTCGGGTCAGGCCGAGTCAGGTGGTTCTTCTTCCACCGAGTCTTCTTCACTCAGTGGTGGACTCAGGTTTGGTCAGAAGATCTACTTCGAGGATGGATCCGGATCCAGAAGCAAGAACCGGGTCAATACCGTTCGTAAGTCGTCTACCACGGCGAGGTGCCAAGTGGAAGGTTGTAGAATGGATCTAAGCAATGTTAAAGCTTATTACTCGAGACACAAAGTTTGTTGCATTCACTCTAAATCATCTAAAGTCATTGTCTCTGGTCTTCATCAAAGGTTTTGTCAACAATGTAGCAGGTTTCACCAGCTTTCTGAGTTTGACTTGGAGAAAAGAAGTTGTCGCAGAAGACTCGCTTGTCATAACGAACGACGAAGAAAACCACAACCCACAACGGCTCTTTTCACTTCTCATTACTCTCGAATCGCTCCATCTCTTTACGGAAACCCCAATGCTGCAATGATTAAAAGCGTTTTGGGAGATCCTACTGCGTGGTCAACCGCAAGATCAGTGATGCAGCGGCCTGGACCGTGGCAGATTAATCCAGTTAGGGAAACCCATCCACACATGAATGTTTTATCACATGGAAGCTCAAGCTTTACTACATGTCCAGAGATGATAAACAACAATAGCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAACTCATACCCAATTCATCAGCAGCAACTTCAGACACCAACAAATACATGGCGACCATCTTCTGGTTTCGACTCGATGATCTCATTCTCCGATAAGGTTACAATGGCTCAGCCACCGCCCATTTCAACCCATCAGCCGCCCATCTCAACACATCAGCAGTACCTCAGCCAAACTTGGGAAGTCATCGCGGGCGAAAAGAGCAATTCACATTATATGTCTCCTGTGAGTCAAATCTCGGAGCCAGCAGATTTCCAGATAAGCAATGGCACCACAATGGGTGGATTTGAGCTGTATCTTCATCAGCAGGTTCTGAAGCAATACATGGAACCCGAGAACACAAGAGCTTATGACTCCTCTCCTCAACATTTCAATTGGTCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008361 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0042127 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

354

Amino Acids

39.67

Weight (kDa)

9.11

Isoelectric Point (pI)

60.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	59 - 132	2.3e-29	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42200 AT3G57920
fragaria_vesca	FvH4_6g22640 FvH4_6g22640
malus_domestica	MD12G1060200.v1.1 MD14G1060200.v1.1
prunus_persica	Prupe.6G256300_v2.0.a1 Prupe.6G256300_v2.0.a1 Prupe.7G074200_v2.0.a1
pyrus_communis	pycom12g05320 pycom14g04880
rosa_chinensis	RchiOBHm_Chr3g0480201
rosa_laevigata	RLG00000023511
rosa_multiflora	Rmu_co8455867.1_g000001 Rmu_sc0006148.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401710
rosa_rugosa	Rorug03G0181000
rosa_samantha	Rh3AG232800 Rh3BG265400 Rh3CG262600 Rh3DG258600
rosa_wichuraiana	Rw3G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	372
Acc36I	ACCTGC	2 cut(s)	303, 976
AccB1I	GGYRCC	2 cut(s)	174, 947
AccB7I	CCANNNNNTGG	1 cut(s)	743
AccI	GTMKAC	1 cut(s)	161
AccII	CGCG	1 cut(s)	869
AccIII	TCCGGA	1 cut(s)	116
AciI	CCGC	5 cut(s)	516, 535, 797, 818, 869
AclWI	GGATC	6 cut(s)	108, 114, 121, 127, 207, 491
AcuI	CTGAAG	2 cut(s)	695, 1013
AdeI	CACNNNGTG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	842
AfiI	CCNNNNNNNGG	3 cut(s)	171, 743, 856
AflIII	ACRYGT	1 cut(s)	620
AgsI	TTSAA	3 cut(s)	657, 807, 1051
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	7 cut(s)	218, 325, 606, 612, 660, 970, 1025
AluI	AGCT	7 cut(s)	218, 325, 606, 612, 660, 970, 1025
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	3 cut(s)	223, 280, 903
AlwI	GGATC	6 cut(s)	108, 114, 121, 127, 207, 491
AlwNI	CAGNNNCTG	1 cut(s)	991
Ama87I	CYCGRG	2 cut(s)	226, 1010
Aor13HI	TCCGGA	1 cut(s)	116
AoxI	GGCC	2 cut(s)	27, 536
ApeKI	GCWGC	3 cut(s)	470, 532, 703
ArsI	GACNNNNNNTTYG	4 cut(s)	222, 254, 283, 315
AseI	ATTAAT	1 cut(s)	555
AspS9I	GGNCC	1 cut(s)	542
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	2 cut(s)	226, 1010
AvaII	GGWCC	1 cut(s)	542
BamHI	GGATCC	2 cut(s)	113, 119
BanI	GGYRCC	2 cut(s)	174, 947
BbsI	GAAGAC	3 cut(s)	51, 275, 370
Bbv12I	GWGCWC	1 cut(s)	667
BbvCI	CCTCAGC	1 cut(s)	845
BbvI	GCAGC	3 cut(s)	457, 544, 715
BccI	CCATC	6 cut(s)	104, 454, 582, 745, 819, 830
BceAI	ACGGC	2 cut(s)	183, 426
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	3 cut(s)	223, 280, 903
BfuAI	ACCTGC	2 cut(s)	303, 976
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	5 cut(s)	471, 533, 536, 704, 818
BlpI	GCTNAGC	1 cut(s)	789
BlsI	GCNGC	5 cut(s)	472, 534, 537, 705, 819
Bme1390I	CCNGG	2 cut(s)	137, 540
Bme18I	GGWCC	1 cut(s)	542
BmeT110I	CYCGRG	2 cut(s)	226, 1010
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	6 cut(s)	115, 121, 176, 921, 949, 1008
BmrFI	CCNGG	2 cut(s)	137, 540
BmsI	GCATC	1 cut(s)	519
BpiI	GAAGAC	3 cut(s)	51, 275, 370
Bpu10I	CCTNAGC	1 cut(s)	845
Bpu1102I	GCTNAGC	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	165, 545
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 743, 856
Bse1I	ACTGG	1 cut(s)	560
Bse3DI	GCAATG	3 cut(s)	214, 480, 949
Bse8I	GATNNNNATC	1 cut(s)	118
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	165, 545
BseGI	GGATG	2 cut(s)	115, 574
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	3 cut(s)	171, 743, 856
BseMI	GCAATG	3 cut(s)	214, 480, 949
BseMII	CTCAG	5 cut(s)	82, 94, 321, 803, 859
BseNI	ACTGG	1 cut(s)	560
BseRI	GAGGAG	2 cut(s)	1024, 1029
BseXI	GCAGC	3 cut(s)	457, 544, 715
Bsh1236I	CGCG	1 cut(s)	869
BshFI	GGCC	2 cut(s)	29, 538
BshNI	GGYRCC	2 cut(s)	174, 947
BsiHKAI	GWGCWC	1 cut(s)	667
BsiHKCI	CYCGRG	2 cut(s)	226, 1010
BsiSI	CCGG	2 cut(s)	117, 136
BslI	CCNNNNNNNGG	3 cut(s)	171, 743, 856
BsmAI	GTCTC	3 cut(s)	223, 280, 903
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	29, 538
BsoBI	CYCGRG	2 cut(s)	226, 1010
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	7 cut(s)	96, 113, 119, 199, 496, 521, 759
Bsp1720I	GCTNAGC	1 cut(s)	789
BspACI	CCGC	5 cut(s)	516, 535, 797, 818, 869
BspANI	GGCC	2 cut(s)	29, 538
BspCNI	CTCAG	5 cut(s)	81, 93, 322, 802, 858
BspEI	TCCGGA	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	869
BspLI	GGNNCC	6 cut(s)	115, 121, 176, 921, 949, 1008
BspMI	ACCTGC	2 cut(s)	303, 976
BspPI	GGATC	6 cut(s)	108, 114, 121, 127, 207, 491
BspT107I	GGYRCC	2 cut(s)	174, 947
BsrDI	GCAATG	3 cut(s)	214, 480, 949
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	165, 545
BssMI	GATC	7 cut(s)	96, 113, 119, 199, 496, 521, 759
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	148, 546
Bst6I	CTCTTC	1 cut(s)	678
BstC8I	GCNNGC	2 cut(s)	871, 924
BstDEI	CTNAG	6 cut(s)	68, 80, 203, 330, 789, 845
BstDSI	CCRYGG	2 cut(s)	165, 545
BstF5I	GGATG	2 cut(s)	115, 574
BstFNI	CGCG	1 cut(s)	869
BstKTI	GATC	7 cut(s)	99, 116, 122, 202, 499, 524, 762
BstMAI	GTCTC	3 cut(s)	223, 280, 903
BstMBI	GATC	7 cut(s)	96, 113, 119, 199, 496, 521, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	879
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	135, 538
BstUI	CGCG	1 cut(s)	869
BstV1I	GCAGC	3 cut(s)	457, 544, 715
BstV2I	GAAGAC	3 cut(s)	51, 275, 370
BstX2I	RGATCY	5 cut(s)	96, 113, 119, 199, 496
BstYI	RGATCY	5 cut(s)	96, 113, 119, 199, 496
BsuRI	GGCC	2 cut(s)	29, 538
BtgI	CCRYGG	2 cut(s)	165, 545
BtgZI	GCGATG	1 cut(s)	850
BtsCI	GGATG	2 cut(s)	115, 574
BtsIMutI	CAGTG	2 cut(s)	76, 531
BveI	ACCTGC	2 cut(s)	303, 976
Cac8I	GCNNGC	2 cut(s)	871, 924
CaiI	CAGNNNCTG	1 cut(s)	991
Cfr13I	GGNCC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	841
CviAII	CATG	5 cut(s)	583, 599, 621, 729, 1003
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	6 cut(s)	68, 80, 203, 330, 789, 845
DpnI	GATC	7 cut(s)	98, 115, 121, 201, 498, 523, 761
DpnII	GATC	7 cut(s)	96, 113, 119, 199, 496, 521, 759
DraIII	CACNNNGTG	1 cut(s)	71
DrdI	GACNNNNNNGTC	1 cut(s)	372
DseDI	GACNNNNNNGTC	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	695, 1013
Eco88I	CYCGRG	2 cut(s)	226, 1010
EcoRII	CCWGG	1 cut(s)	538
FaeI	CATG	5 cut(s)	586, 602, 624, 732, 1006
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 355, 387
FatI	CATG	5 cut(s)	582, 598, 620, 728, 1002
FauI	CCCGC	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	5 cut(s)	471, 533, 536, 704, 818
FokI	GGATG	2 cut(s)	122, 561
Fsp4HI	GCNGC	5 cut(s)	471, 533, 536, 704, 818
GluI	GCNGC	5 cut(s)	471, 533, 536, 704, 818
HaeIII	GGCC	2 cut(s)	29, 538
HapII	CCGG	2 cut(s)	117, 136
Hin1II	CATG	5 cut(s)	586, 602, 624, 732, 1006
HincII	GTYRAC	2 cut(s)	302, 513
HindII	GTYRAC	2 cut(s)	302, 513
HindIII	AAGCTT	2 cut(s)	216, 610
HinfI	GANTC	9 cut(s)	32, 56, 78, 366, 438, 653, 752, 907, 1031
HpaII	CCGG	2 cut(s)	117, 136
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	4 cut(s)	77, 162, 302, 513
Hpy188I	TCNGA	6 cut(s)	93, 331, 714, 772, 919, 993
Hpy188III	TCNNGA	6 cut(s)	117, 123, 228, 435, 626, 934
Hpy8I	GTNNAC	4 cut(s)	77, 162, 302, 513
Hpy99I	CGWCG	1 cut(s)	390
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	148, 546
HpyCH4V	TGCA	3 cut(s)	246, 473, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	879
HpyF3I	CTNAG	6 cut(s)	68, 80, 203, 330, 789, 845
Hsp92II	CATG	5 cut(s)	586, 602, 624, 732, 1006
Kpn2I	TCCGGA	1 cut(s)	116
Kzo9I	GATC	7 cut(s)	96, 113, 119, 199, 496, 521, 759
LmnI	GCTCC	2 cut(s)	448, 919
Lsp1109I	GCAGC	3 cut(s)	457, 544, 715
LweI	GCATC	1 cut(s)	519
MaeIII	GTNAC	1 cut(s)	778
MalI	GATC	7 cut(s)	98, 115, 121, 201, 498, 523, 761
MboI	GATC	7 cut(s)	96, 113, 119, 199, 496, 521, 759
MfeI	CAATTG	1 cut(s)	1051
MflI	RGATCY	5 cut(s)	96, 113, 119, 199, 496
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	3 cut(s)	693, 883, 1051
MlyI	GAGTC	7 cut(s)	41, 65, 72, 360, 746, 916, 1025
MnlI	CCTC	5 cut(s)	100, 165, 854, 1045, 1050
MroI	TCCGGA	1 cut(s)	116
MseI	TTAA	4 cut(s)	11, 213, 480, 555
MslI	CAYNNNNRTG	2 cut(s)	585, 953
MspA1I	CMGCKG	1 cut(s)	535
MspI	CCGG	2 cut(s)	117, 136
MspR9I	CCNGG	2 cut(s)	137, 540
MunI	CAATTG	1 cut(s)	1051
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	869
MwoI	GCNNNNNNNGC	1 cut(s)	879
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	7 cut(s)	96, 113, 119, 199, 496, 521, 759
NlaIII	CATG	5 cut(s)	586, 602, 624, 732, 1006
NlaIV	GGNNCC	6 cut(s)	115, 121, 176, 921, 949, 1008
NmeAIII	GCCGAG	1 cut(s)	55
NspI	RCATGY	1 cut(s)	624
PaeR7I	CTCGAG	1 cut(s)	226
PciI	ACATGT	1 cut(s)	620
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	438, 653
PflMI	CCANNNNNTGG	1 cut(s)	743
PkrI	GCNGC	5 cut(s)	472, 534, 537, 705, 819
PleI	GAGTC	7 cut(s)	40, 64, 72, 360, 746, 915, 1025
PpsI	GAGTC	7 cut(s)	40, 64, 72, 360, 746, 915, 1025
PscI	ACATGT	1 cut(s)	620
PshBI	ATTAAT	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	6 cut(s)	115, 121, 176, 921, 949, 1008
PspPI	GGNCC	1 cut(s)	542
PstNI	CAGNNNCTG	1 cut(s)	991
PsuI	RGATCY	5 cut(s)	96, 113, 119, 199, 496
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
RseI	CAYNNNNRTG	2 cut(s)	585, 953
SaqAI	TTAA	4 cut(s)	11, 213, 480, 555
SatI	GCNGC	5 cut(s)	471, 533, 536, 704, 818
Sau3AI	GATC	7 cut(s)	96, 113, 119, 199, 496, 521, 759
Sau96I	GGNCC	1 cut(s)	542
SchI	GAGTC	7 cut(s)	41, 65, 72, 360, 746, 916, 1025
ScrFI	CCNGG	2 cut(s)	137, 540
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	1 cut(s)	519
Sfr274I	CTCGAG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	542
SlaI	CTCGAG	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	585, 953
SmlI	CTYRAG	2 cut(s)	226, 607
SmoI	CTYRAG	2 cut(s)	226, 607
Sse9I	AATT	3 cut(s)	693, 883, 1051
SsiI	CCGC	5 cut(s)	516, 535, 797, 818, 869
StyD4I	CCNGG	2 cut(s)	135, 538
TaaI	ACNGT	2 cut(s)	148, 546
TaqI	TCGA	5 cut(s)	105, 227, 436, 750, 755
TasI	AATT	3 cut(s)	693, 883, 1051
TauI	GCSGC	2 cut(s)	538, 820
TfiI	GAWTC	2 cut(s)	438, 653
Tru1I	TTAA	4 cut(s)	11, 213, 480, 555
Tru9I	TTAA	4 cut(s)	11, 213, 480, 555
TscAI	CASTG	2 cut(s)	76, 531
TseI	GCWGC	3 cut(s)	470, 532, 703
TspDTI	ATGAA	4 cut(s)	275, 599, 686, 968
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	2 cut(s)	76, 531
Van91I	CCANNNNNTGG	1 cut(s)	743
VpaK11BI	GGWCC	1 cut(s)	542
VspI	ATTAAT	1 cut(s)	555
XceI	RCATGY	1 cut(s)	624
XcmI	CCANNNNNNNNNTGG	2 cut(s)	726, 941
XhoI	CTCGAG	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.