Rw3G020910

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
25015546 .. 25019601
4056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020910.1

Sequence Viewer

Length: 1152 bp
ATGGGCTCGACCTCTATGACCACTACTGACTCAGGAGGCAGCTCCTCCTCCCCACCCAACAACTCCTCCACCGAGGAGTCCCTCAACGGCCTCAAATTCGGCCGCAAAATCTACTTTGAGGACTCTGCTCTCGGACCCAACCCCCCCAAATCCGGGTCAGGGTCCGCCGGGTCTTCCTCCTCCGGGGCCACGCCGCCCAAGAAGCAGAGGAGCGGTGGTGGTGCTGGGTTGGTCCATCAGGGCCACCCTCCGAGGTGCCAGGTCGAGGGCTGCAACGTAGATCTGAGTGGTGTTAAAGCTTACTATTCCAGGCACAAAGTGTGTGCCATGCACTCCAAGACCCCTACTGTTATTGTTGCCGGCCTTGAACAGAGGTTTTGCCAGCAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGACCAAGGGAAACGTAGTTGCCGTAGACGTCTGGCTGGTCATAATGAGCGTAGGAGAAAGCCACAACCTGGATCCATGATGTCTACACGTTTTGGCCGTCTCTCTTCGTCTATTTATGAAAACACCAGCCGAGTTGGAAGCTTTCTGATGGACTTCACCGCATACCCAAGGGCTGGGAGAGATGAATGGGCAACTGCAAGAACTTGTGAGCGGCCACCTGGAAATCAAACTGTCACTGCCACCGGAAAGTTTCTTCAACATCCATGGCAGAGCAACCCTGAGAATACTCGATCTGATCTTTACCTGCAAGGGTCAGCCGGTGGTACCAGTTATCCTGGTCCTGGAATTCCTCCGGGAGAATGCGTCTCAGGAGTCACCGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAATCAACCATGGGACTCTAGAAACCGCGGTGTTGGGACAAATGCCTTCATAAACACCCAAGGGGCACCCGTGGCTCAATCAATAGCTAATGTTGGCACCATCAATCCATTTCCAACCACATCATGGGGTTTCAAGGGAAATGAGGCTGGTAGCAGTTCGCATCAGATGCTTCCTGATCTGGGTCTTGGTCAAATTTCGCAGCCTCATAACAGTCATTACTCTAGTGAGCTCGAGTTGTCTCAACAGGGTAGGAGGCAGCAAAATATGGAACTTGGAAACTCCAGGGGCTACGACTCCTCCAGTCAACACATGAATTGGTCTCTTTAA

Protein Analysis

383

Amino Acids

41.11

Weight (kDa)

9.34

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 86 - 159 1e-33 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 448
Acc36I ACCTGC 1 cut(s) 729
Acc65I GGTACC 1 cut(s) 740
AccB1I GGYRCC 4 cut(s) 255, 740, 889, 920
AccB7I CCANNNNNTGG 3 cut(s) 485, 590, 948
AccBSI CCGCTC 2 cut(s) 213, 628
AccI GTMKAC 2 cut(s) 442, 500
AccII CGCG 1 cut(s) 852
AciI CCGC 8 cut(s) 103, 165, 194, 213, 576, 628, 850, 852
AclWI GGATC 2 cut(s) 483, 496
AcoI YGGCCR 3 cut(s) 100, 511, 629
AcsI RAATTY 4 cut(s) 95, 413, 762, 1017
AcyI GRCGYC 1 cut(s) 445
AdeI CACNNNGTG 1 cut(s) 319
AfaI GTAC 1 cut(s) 742
AflIII ACRYGT 1 cut(s) 503
AgsI TTSAA 3 cut(s) 368, 674, 958
AjnI CCWGG 7 cut(s) 258, 308, 484, 634, 751, 757, 1106
AluBI AGCT 7 cut(s) 42, 299, 406, 558, 804, 911, 1054
AluI AGCT 7 cut(s) 42, 299, 406, 558, 804, 911, 1054
Alw21I GWGCWC 2 cut(s) 811, 1056
Alw26I GTCTC 3 cut(s) 521, 787, 1068
AlwI GGATC 2 cut(s) 483, 496
Ama87I CYCGRG 2 cut(s) 799, 1055
AoxI GGCC 7 cut(s) 88, 100, 186, 241, 361, 511, 629
ApeKI GCWGC 4 cut(s) 39, 270, 1024, 1081
ApoI RAATTY 4 cut(s) 95, 413, 762, 1017
Asp718I GGTACC 1 cut(s) 740
AspS9I GGNCC 6 cut(s) 134, 162, 186, 232, 241, 755
AsuC2I CCSGG 4 cut(s) 154, 169, 184, 771
AsuHPI GGTGA 2 cut(s) 565, 784
AvaI CYCGRG 2 cut(s) 799, 1055
AvaII GGWCC 4 cut(s) 134, 162, 232, 755
BaeGI GKGCMC 1 cut(s) 892
BamHI GGATCC 1 cut(s) 488
BanI GGYRCC 4 cut(s) 255, 740, 889, 920
BanII GRGCYC 2 cut(s) 8, 1056
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 2 cut(s) 811, 1056
BbvI GCAGC 4 cut(s) 51, 257, 1036, 1093
BccI CCATC 3 cut(s) 243, 559, 932
BceAI ACGGC 3 cut(s) 103, 423, 498
BciT130I CCWGG 7 cut(s) 260, 310, 486, 636, 753, 759, 1108
BcnI CCSGG 4 cut(s) 154, 169, 184, 771
BcoDI GTCTC 3 cut(s) 521, 787, 1068
BfaI CTAG 2 cut(s) 843, 1047
BfuAI ACCTGC 1 cut(s) 729
BglII AGATCT 1 cut(s) 280
BisI GCNGC 7 cut(s) 40, 103, 194, 271, 629, 1025, 1082
BlsI GCNGC 7 cut(s) 41, 104, 195, 272, 630, 1026, 1083
Bme18I GGWCC 4 cut(s) 134, 162, 232, 755
BmeT110I CYCGRG 2 cut(s) 799, 1055
BmgT120I GGNCC 6 cut(s) 134, 162, 186, 232, 241, 755
BmiI GGNNCC 8 cut(s) 136, 163, 187, 257, 490, 742, 891, 922
BmsI GCATC 2 cut(s) 981, 994
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 793, 825
BpmI CTGGAG 2 cut(s) 1090, 1108
BpuMI CCSGG 4 cut(s) 154, 169, 184, 771
BsaHI GRCGYC 1 cut(s) 445
BsaWI WCCGGW 1 cut(s) 659
BsaXI ACNNNNNCTCC 8 cut(s) 50, 80, 202, 232, 765, 795, 1106, 1136
Bse118I RCCGGY 2 cut(s) 359, 734
Bse1I ACTGG 2 cut(s) 744, 1125
BseBI CCWGG 7 cut(s) 260, 310, 486, 636, 753, 759, 1108
BseGI GGATG 1 cut(s) 676
BseMII CTCAG 4 cut(s) 45, 275, 687, 798
BseNI ACTGG 2 cut(s) 744, 1125
BseRI GAGGAG 7 cut(s) 34, 37, 55, 89, 169, 223, 1111
BseSI GKGCMC 1 cut(s) 892
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 4 cut(s) 51, 257, 1036, 1093
BseYI CCCAGC 2 cut(s) 224, 590
Bsh1236I CGCG 1 cut(s) 852
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 7 cut(s) 90, 102, 188, 243, 363, 513, 631
BshNI GGYRCC 4 cut(s) 255, 740, 889, 920
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 2 cut(s) 811, 1056
BsiHKCI CYCGRG 2 cut(s) 799, 1055
BsiSI CCGG 7 cut(s) 153, 168, 183, 360, 660, 735, 770
BslFI GGGAC 3 cut(s) 64, 851, 874
BsmAI GTCTC 3 cut(s) 521, 787, 1068
BsmBI CGTCTC 2 cut(s) 521, 787
BsmFI GGGAC 3 cut(s) 64, 851, 874
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 7 cut(s) 90, 102, 188, 243, 363, 513, 631
BsoBI CYCGRG 2 cut(s) 799, 1055
Bsp1286I GDGCHC 4 cut(s) 8, 811, 892, 1056
Bsp143I GATC 5 cut(s) 280, 488, 707, 712, 1000
Bsp19I CCATGG 2 cut(s) 680, 833
BspACI CCGC 8 cut(s) 103, 165, 194, 213, 576, 628, 850, 852
BspANI GGCC 7 cut(s) 90, 102, 188, 243, 363, 513, 631
BspCNI CTCAG 4 cut(s) 44, 276, 688, 797
BspFNI CGCG 1 cut(s) 852
BspLI GGNNCC 8 cut(s) 136, 163, 187, 257, 490, 742, 891, 922
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 2 cut(s) 483, 496
BspT107I GGYRCC 4 cut(s) 255, 740, 889, 920
BsrBI CCGCTC 2 cut(s) 213, 628
BsrFI RCCGGY 2 cut(s) 359, 734
BsrI ACTGG 2 cut(s) 744, 1125
BssAI RCCGGY 2 cut(s) 359, 734
BssMI GATC 5 cut(s) 280, 488, 707, 712, 1000
BssNI GRCGYC 1 cut(s) 445
BssT1I CCWWGG 5 cut(s) 421, 584, 680, 833, 883
Bst2UI CCWGG 7 cut(s) 260, 310, 486, 636, 753, 759, 1108
Bst4CI ACNGT 3 cut(s) 349, 649, 1037
Bst6I CTCTTC 2 cut(s) 526, 822
BstACI GRCGYC 1 cut(s) 445
BstAPI GCANNNNNTGC 1 cut(s) 991
BstC8I GCNNGC 2 cut(s) 361, 383
BstDEI CTNAG 4 cut(s) 31, 284, 696, 784
BstDSI CCRYGG 4 cut(s) 680, 833, 850, 894
BstF5I GGATG 1 cut(s) 676
BstFNI CGCG 1 cut(s) 852
BstKTI GATC 5 cut(s) 283, 491, 710, 715, 1003
BstMAI GTCTC 3 cut(s) 521, 787, 1068
BstMBI GATC 5 cut(s) 280, 488, 707, 712, 1000
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 3 cut(s) 202, 896, 991
BstNI CCWGG 7 cut(s) 260, 310, 486, 636, 753, 759, 1108
BstSLI GKGCMC 1 cut(s) 892
BstUI CGCG 1 cut(s) 852
BstV1I GCAGC 4 cut(s) 51, 257, 1036, 1093
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 280, 488
BstYI RGATCY 2 cut(s) 280, 488
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 7 cut(s) 90, 102, 188, 243, 363, 513, 631
BtgI CCRYGG 4 cut(s) 680, 833, 850, 894
BtsCI GGATG 1 cut(s) 676
BtsI GCAGTG 2 cut(s) 392, 651
BtsIMutI CAGTG 2 cut(s) 392, 651
BveI ACCTGC 1 cut(s) 729
Cac8I GCNNGC 2 cut(s) 361, 383
Cfr10I RCCGGY 2 cut(s) 359, 734
Cfr13I GGNCC 6 cut(s) 134, 162, 186, 232, 241, 755
Cfr42I CCGCGG 1 cut(s) 853
CseI GACGC 1 cut(s) 769
Csp6I GTAC 1 cut(s) 741
CviAII CATG 6 cut(s) 328, 493, 681, 834, 948, 1135
CviQI GTAC 1 cut(s) 741
DdeI CTNAG 4 cut(s) 31, 284, 696, 784
DpnI GATC 5 cut(s) 282, 490, 709, 714, 1002
DpnII GATC 5 cut(s) 280, 488, 707, 712, 1000
DraIII CACNNNGTG 1 cut(s) 319
EaeI YGGCCR 3 cut(s) 100, 511, 629
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 526, 822
EarI CTCTTC 2 cut(s) 526, 822
EciI GGCGGA 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 1054
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 5 cut(s) 421, 584, 680, 833, 883
Eco24I GRGCYC 2 cut(s) 8, 1056
Eco47I GGWCC 4 cut(s) 134, 162, 232, 755
Eco52I CGGCCG 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 1054
Eco88I CYCGRG 2 cut(s) 799, 1055
EcoICRI GAGCTC 1 cut(s) 1054
EcoRI GAATTC 1 cut(s) 762
EcoRII CCWGG 7 cut(s) 258, 308, 484, 634, 751, 757, 1106
EcoT14I CCWWGG 5 cut(s) 421, 584, 680, 833, 883
EcoT38I GRGCYC 2 cut(s) 8, 1056
ErhI CCWWGG 5 cut(s) 421, 584, 680, 833, 883
Esp3I CGTCTC 2 cut(s) 521, 787
FaeI CATG 6 cut(s) 331, 496, 684, 837, 951, 1138
FaqI GGGAC 3 cut(s) 64, 851, 874
FatI CATG 6 cut(s) 327, 492, 680, 833, 947, 1134
FblI GTMKAC 2 cut(s) 442, 500
Fnu4HI GCNGC 7 cut(s) 40, 103, 194, 271, 629, 1025, 1082
FokI GGATG 1 cut(s) 663
FriOI GRGCYC 2 cut(s) 8, 1056
Fsp4HI GCNGC 7 cut(s) 40, 103, 194, 271, 629, 1025, 1082
FspBI CTAG 2 cut(s) 843, 1047
GluI GCNGC 7 cut(s) 40, 103, 194, 271, 629, 1025, 1082
GsaI CCCAGC 2 cut(s) 228, 594
GsuI CTGGAG 2 cut(s) 1090, 1108
HaeIII GGCC 7 cut(s) 90, 102, 188, 243, 363, 513, 631
HapII CCGG 7 cut(s) 153, 168, 183, 360, 660, 735, 770
HgaI GACGC 1 cut(s) 769
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 6 cut(s) 331, 496, 684, 837, 951, 1138
HincII GTYRAC 1 cut(s) 1130
HindII GTYRAC 1 cut(s) 1130
HindIII AAGCTT 2 cut(s) 297, 556
HinfI GANTC 7 cut(s) 29, 77, 122, 789, 797, 839, 1118
HpaII CCGG 7 cut(s) 153, 168, 183, 360, 660, 735, 770
HphI GGTGA 2 cut(s) 565, 784
Hpy166II GTNNAC 3 cut(s) 443, 501, 1130
Hpy188I TCNGA 6 cut(s) 134, 252, 285, 564, 712, 990
Hpy188III TCNNGA 5 cut(s) 33, 410, 786, 843, 998
Hpy8I GTNNAC 3 cut(s) 443, 501, 1130
HpyAV CCTTC 1 cut(s) 880
HpyCH4III ACNGT 3 cut(s) 349, 649, 1037
HpyCH4IV ACGT 4 cut(s) 276, 430, 445, 505
HpyCH4V TGCA 4 cut(s) 273, 331, 614, 724
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 896, 991
HpyF3I CTNAG 4 cut(s) 31, 284, 696, 784
HpySE526I ACGT 4 cut(s) 276, 430, 445, 505
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 6 cut(s) 331, 496, 684, 837, 951, 1138
KpnI GGTACC 1 cut(s) 744
KroI GCCGGC 1 cut(s) 359
KroNI GCCGGC 1 cut(s) 361
KspI CCGCGG 1 cut(s) 853
Kzo9I GATC 5 cut(s) 280, 488, 707, 712, 1000
LmnI GCTCC 2 cut(s) 47, 210
Lsp1109I GCAGC 4 cut(s) 51, 257, 1036, 1093
LweI GCATC 2 cut(s) 981, 994
MaeI CTAG 2 cut(s) 843, 1047
MaeII ACGT 4 cut(s) 276, 430, 445, 505
MaeIII GTNAC 2 cut(s) 649, 790
MalI GATC 5 cut(s) 282, 490, 709, 714, 1002
MbiI CCGCTC 2 cut(s) 213, 628
MboI GATC 5 cut(s) 280, 488, 707, 712, 1000
MboII GAAGA 4 cut(s) 165, 513, 662, 809
MflI RGATCY 2 cut(s) 280, 488
MhlI GDGCHC 4 cut(s) 8, 811, 892, 1056
MluCI AATT 5 cut(s) 95, 413, 762, 1017, 1138
MlyI GAGTC 7 cut(s) 23, 86, 116, 791, 798, 833, 1112
MmeI TCCRAC 2 cut(s) 532, 962
MroNI GCCGGC 1 cut(s) 359
MseI TTAA 2 cut(s) 294, 1150
MspA1I CMGCKG 1 cut(s) 852
MspI CCGG 7 cut(s) 153, 168, 183, 360, 660, 735, 770
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 7 cut(s) 260, 310, 486, 636, 753, 759, 1108
MvnI CGCG 1 cut(s) 852
MwoI GCNNNNNNNGC 3 cut(s) 202, 896, 991
NaeI GCCGGC 1 cut(s) 361
NciI CCSGG 4 cut(s) 154, 169, 184, 771
NcoI CCATGG 2 cut(s) 680, 833
NdeII GATC 5 cut(s) 280, 488, 707, 712, 1000
NgoMIV GCCGGC 1 cut(s) 359
NlaIII CATG 6 cut(s) 331, 496, 684, 837, 951, 1138
NlaIV GGNNCC 8 cut(s) 136, 163, 187, 257, 490, 742, 891, 922
NmeAIII GCCGAG 1 cut(s) 572
NmuCI GTSAC 2 cut(s) 649, 790
PaeR7I CTCGAG 2 cut(s) 799, 1055
PcsI WCGNNNNNNNCGW 2 cut(s) 436, 511
PctI GAATGC 1 cut(s) 782
PdiI GCCGGC 1 cut(s) 361
PflMI CCANNNNNTGG 3 cut(s) 485, 590, 948
PfoI TCCNGGA 2 cut(s) 757, 769
PkrI GCNGC 7 cut(s) 41, 104, 195, 272, 630, 1026, 1083
PleI GAGTC 7 cut(s) 23, 85, 116, 791, 797, 833, 1112
PpsI GAGTC 7 cut(s) 23, 85, 116, 791, 797, 833, 1112
Psp124BI GAGCTC 1 cut(s) 1056
Psp6I CCWGG 7 cut(s) 258, 308, 484, 634, 751, 757, 1106
PspFI CCCAGC 2 cut(s) 224, 590
PspGI CCWGG 7 cut(s) 258, 308, 484, 634, 751, 757, 1106
PspN4I GGNNCC 8 cut(s) 136, 163, 187, 257, 490, 742, 891, 922
PspPI GGNCC 6 cut(s) 134, 162, 186, 232, 241, 755
PspXI VCTCGAGB 2 cut(s) 799, 1055
PsuI RGATCY 2 cut(s) 280, 488
RsaI GTAC 1 cut(s) 742
RsaNI GTAC 1 cut(s) 741
SacI GAGCTC 1 cut(s) 1056
SacII CCGCGG 1 cut(s) 853
SaqAI TTAA 2 cut(s) 294, 1150
SatI GCNGC 7 cut(s) 40, 103, 194, 271, 629, 1025, 1082
Sau3AI GATC 5 cut(s) 280, 488, 707, 712, 1000
Sau96I GGNCC 6 cut(s) 134, 162, 186, 232, 241, 755
SchI GAGTC 7 cut(s) 23, 86, 116, 791, 798, 833, 1112
SduI GDGCHC 4 cut(s) 8, 811, 892, 1056
SfaNI GCATC 2 cut(s) 981, 994
Sfr274I CTCGAG 2 cut(s) 799, 1055
Sfr303I CCGCGG 1 cut(s) 853
SgrBI CCGCGG 1 cut(s) 853
SinI GGWCC 4 cut(s) 134, 162, 232, 755
SlaI CTCGAG 2 cut(s) 799, 1055
SmlI CTYRAG 2 cut(s) 799, 1055
SmoI CTYRAG 2 cut(s) 799, 1055
Sse9I AATT 5 cut(s) 95, 413, 762, 1017, 1138
SsiI CCGC 8 cut(s) 103, 165, 194, 213, 576, 628, 850, 852
SspMI CTAG 2 cut(s) 843, 1047
SstI GAGCTC 1 cut(s) 1056
StyI CCWWGG 5 cut(s) 421, 584, 680, 833, 883
TaaI ACNGT 3 cut(s) 349, 649, 1037
TaiI ACGT 4 cut(s) 279, 433, 448, 508
TaqI TCGA 5 cut(s) 8, 264, 706, 800, 1056
TasI AATT 5 cut(s) 95, 413, 762, 1017, 1138
TauI GCSGC 3 cut(s) 105, 196, 631
Tru1I TTAA 2 cut(s) 294, 1150
Tru9I TTAA 2 cut(s) 294, 1150
TscAI CASTG 2 cut(s) 392, 658
TseFI GTSAC 2 cut(s) 649, 790
TseI GCWGC 4 cut(s) 39, 270, 1024, 1081
Tsp45I GTSAC 2 cut(s) 649, 790
TspDTI ATGAA 5 cut(s) 389, 549, 615, 862, 1151
TspRI CASTG 2 cut(s) 392, 658
Van91I CCANNNNNTGG 3 cut(s) 485, 590, 948
VpaK11BI GGWCC 4 cut(s) 134, 162, 232, 755
XapI RAATTY 4 cut(s) 95, 413, 762, 1017
XbaI TCTAGA 1 cut(s) 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 945
XhoI CTCGAG 2 cut(s) 799, 1055
XmiI GTMKAC 2 cut(s) 442, 500
XspI CTAG 2 cut(s) 843, 1047
ZraI GACGTC 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.