Prupe.7G074200_v2.0.a1

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
11146101 .. 11151079
4979 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G074200.1

Sequence Viewer

Length: 1152 bp
ATGGAAATGAGCTCGAGCTCTATGACCGAGTCAGGCAGCTCATCTTCCTCTTCCCCACCAAACTCCTCCACTGAGTCACTCAACGGCTTAAAATTTGGCCAGAAAATCTACTTTGAGGATGCGAGTCTCGGAGCTTCATACAAATCCGGGTCTGCCGGGTCTTCTTCTTCTTCTGGGGCTACCCCGCCAAAGAAGCAAAGGGCCGGGCATTTGGCTCATCCGGGTCAGCCACCCAGGTGCCAGGTTGAAGGCTGCCAGGTAGATCTGAGTGATGCCAAAGCTTACTATTCCAGGCACAAAGTGTGTGGCTTGCACTCTAAGACCCCTAAGGTCATTGTTGCTGGTCTTGAACAGAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGACCAAGGAAAACGTAGTTGCCGTAGACGCCTGGCTGGTCATAATGAGCGCCGGAGAAAGCCACAACCTGGATCCGTATCTACGCGTTTTGGCCGACTTTCTTCGTCTCTCTTTGAAAACAGCAACAAAGTTGGAAGCTTTCTGATGGACTTCACTGCATACCCAAGGCCTGCTGACAGGGATGCAAGGGCGACCACGAGAACTGAGCGAGTACCTGTTAATCAAAATGCCAATGGCACGGGGAAGTTTCTTCAACATGCATGGCAGAGCAACTCTGTTACTACATCCGGCCGTTATCTACAGGGTTCAGCAGGCGGGACTAGTTATCCTGATCCTGGAATTCCTCCTCGAGAATGCATCACAGGAATCGCTGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAACCATGTGGCTCTCGAAACCGAGTATCGGGTGTTGGGATGAATGCCTACTTGAATACCTGGATGAACACCCAAGGGGTAACTGTGGCTCAACCAATGGCTCATGCTGGGACTTCCAATCACTTTCCAACCACTTCGTGGGGTTTCAAGGGAAATGAGGCTGGTAGCAGCTCACACGAGATGCTTCCCAATCTGGGTCTCGGTCAAATCTCACAGCCTCTCAGTAGTCAGTACTCTGGTATGCTTGAGCTGTCTCAACAGAACAGGAGGCAGCAGCAGCACATGGAACTTGGACACACCAGGGCCTATGACTCCTCCACCAACCAGCAGATGCACTGGTCACTTTAA

Protein Analysis

384

Amino Acids

41.51

Weight (kDa)

9.59

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AccB7I CCANNNNNTGG 2 cut(s) 467, 942
AccI GTMKAC 1 cut(s) 424
AccII CGCG 1 cut(s) 484
AciI CCGC 2 cut(s) 185, 714
AclWI GGATC 3 cut(s) 465, 478, 725
AcoI YGGCCR 3 cut(s) 97, 490, 688
AcsI RAATTY 3 cut(s) 92, 395, 738
AcyI GRCGYC 1 cut(s) 427
AdeI CACNNNGTG 2 cut(s) 301, 942
AfaI GTAC 2 cut(s) 612, 1037
AfiI CCNNNNNNNGG 5 cut(s) 467, 734, 832, 942, 998
AflIII ACRYGT 1 cut(s) 482
AgsI TTSAA 6 cut(s) 248, 350, 515, 653, 859, 952
AhlI ACTAGT 1 cut(s) 719
AjnI CCWGG 9 cut(s) 233, 240, 255, 290, 429, 466, 733, 863, 1103
AleI CACNNNNGTG 1 cut(s) 235
Alw21I GWGCWC 3 cut(s) 14, 20, 787
Alw26I GTCTC 4 cut(s) 131, 510, 1007, 1062
AlwI GGATC 3 cut(s) 465, 478, 725
Ama87I CYCGRG 2 cut(s) 13, 747
AoxI GGCC 6 cut(s) 97, 201, 490, 566, 688, 1107
ApeKI GCWGC 6 cut(s) 36, 252, 972, 1075, 1078, 1081
ApoI RAATTY 3 cut(s) 92, 395, 738
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 2 cut(s) 201, 1107
AsuC2I CCSGG 4 cut(s) 148, 157, 205, 222
AvaI CYCGRG 2 cut(s) 13, 747
AxyI CCTNAGG 1 cut(s) 327
BalI TGGCCA 1 cut(s) 99
BamHI GGATCC 1 cut(s) 470
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 2 cut(s) 14, 20
BauI CACGAG 2 cut(s) 595, 980
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 3 cut(s) 14, 20, 787
BbvI GCAGC 6 cut(s) 48, 239, 984, 1087, 1090, 1093
BccI CCATC 1 cut(s) 538
BceAI ACGGC 3 cut(s) 100, 405, 675
BciT130I CCWGG 9 cut(s) 235, 242, 257, 292, 431, 468, 735, 865, 1105
BcnI CCSGG 4 cut(s) 148, 157, 205, 222
BcoDI GTCTC 4 cut(s) 131, 510, 1007, 1062
BcuI ACTAGT 1 cut(s) 719
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 1 cut(s) 698
BfoI RGCGCY 1 cut(s) 451
BglII AGATCT 1 cut(s) 262
BisI GCNGC 6 cut(s) 37, 253, 973, 1076, 1079, 1082
BlsI GCNGC 6 cut(s) 38, 254, 974, 1077, 1080, 1083
BmcAI AGTACT 1 cut(s) 1037
BmeT110I CYCGRG 2 cut(s) 13, 747
BmgT120I GGNCC 2 cut(s) 201, 1107
BmiI GGNNCC 2 cut(s) 239, 472
BmsI GCATC 6 cut(s) 109, 262, 571, 765, 975, 1125
BpiI GAAGAC 1 cut(s) 153
BpuEI CTTGAG 2 cut(s) 760, 1070
BpuMI CCSGG 4 cut(s) 148, 157, 205, 222
BsaBI GATNNNNATC 1 cut(s) 475
BsaHI GRCGYC 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 1007
BsaJI CCNNGG 5 cut(s) 233, 403, 563, 877, 1104
Bsc4I CCNNNNNNNGG 5 cut(s) 467, 734, 832, 942, 998
Bse1I ACTGG 1 cut(s) 1145
Bse21I CCTNAGG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 475
BseBI CCWGG 9 cut(s) 235, 242, 257, 292, 431, 468, 735, 865, 1105
BseDI CCNNGG 5 cut(s) 233, 403, 563, 877, 1104
BseGI GGATG 6 cut(s) 124, 217, 586, 683, 849, 873
BseJI GATNNNNATC 1 cut(s) 475
BseLI CCNNNNNNNGG 5 cut(s) 467, 734, 832, 942, 998
BseMII CTCAG 4 cut(s) 63, 257, 594, 1039
BseNI ACTGG 1 cut(s) 1145
BseRI GAGGAG 3 cut(s) 55, 735, 1108
BseX3I CGGCCG 1 cut(s) 688
BseXI GCAGC 6 cut(s) 48, 239, 984, 1087, 1090, 1093
BseYI CCCAGC 1 cut(s) 911
Bsh1236I CGCG 1 cut(s) 484
Bsh1285I CGRYCG 1 cut(s) 691
BshFI GGCC 6 cut(s) 99, 203, 492, 568, 690, 1109
BshNI GGYRCC 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 691
BsiHKAI GWGCWC 3 cut(s) 14, 20, 787
BsiHKCI CYCGRG 2 cut(s) 13, 747
BsiSI CCGG 6 cut(s) 147, 156, 204, 221, 451, 687
BslFI GGGAC 2 cut(s) 730, 928
BslI CCNNNNNNNGG 5 cut(s) 467, 734, 832, 942, 998
BsmAI GTCTC 4 cut(s) 131, 510, 1007, 1062
BsmBI CGTCTC 1 cut(s) 510
BsmFI GGGAC 2 cut(s) 730, 928
BsmI GAATGC 2 cut(s) 758, 853
BsnI GGCC 6 cut(s) 99, 203, 492, 568, 690, 1109
Bso31I GGTCTC 1 cut(s) 1007
BsoBI CYCGRG 2 cut(s) 13, 747
Bsp1286I GDGCHC 3 cut(s) 14, 20, 787
Bsp143I GATC 3 cut(s) 262, 470, 730
BspACI CCGC 2 cut(s) 185, 714
BspANI GGCC 6 cut(s) 99, 203, 492, 568, 690, 1109
BspCNI CTCAG 4 cut(s) 64, 258, 595, 1038
BspFNI CGCG 1 cut(s) 484
BspLI GGNNCC 2 cut(s) 239, 472
BspPI GGATC 3 cut(s) 465, 478, 725
BspT107I GGYRCC 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 1007
BsrI ACTGG 1 cut(s) 1145
BssECI CCNNGG 5 cut(s) 233, 403, 563, 877, 1104
BssMI GATC 3 cut(s) 262, 470, 730
BssNI GRCGYC 1 cut(s) 427
BssSI CACGAG 2 cut(s) 595, 980
BssT1I CCWWGG 3 cut(s) 403, 563, 877
Bst2BI CACGAG 2 cut(s) 595, 980
Bst2UI CCWGG 9 cut(s) 235, 242, 257, 292, 431, 468, 735, 865, 1105
Bst4CI ACNGT 2 cut(s) 369, 889
Bst6I CTCTTC 2 cut(s) 55, 798
BstACI GRCGYC 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 311, 570, 712
BstDEI CTNAG 6 cut(s) 72, 266, 318, 327, 603, 1025
BstF5I GGATG 6 cut(s) 124, 217, 586, 683, 849, 873
BstFNI CGCG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 3 cut(s) 265, 473, 733
BstMAI GTCTC 4 cut(s) 131, 510, 1007, 1062
BstMBI GATC 3 cut(s) 262, 470, 730
BstMCI CGRYCG 1 cut(s) 691
BstMWI GCNNNNNNNGC 3 cut(s) 193, 426, 1081
BstNI CCWGG 9 cut(s) 235, 242, 257, 292, 431, 468, 735, 865, 1105
BstNSI RCATGY 1 cut(s) 659
BstSFI CTRYAG 1 cut(s) 698
BstUI CGCG 1 cut(s) 484
BstV1I GCAGC 6 cut(s) 48, 239, 984, 1087, 1090, 1093
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 2 cut(s) 262, 470
BstYI RGATCY 2 cut(s) 262, 470
BstZI CGGCCG 1 cut(s) 688
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 6 cut(s) 99, 203, 492, 568, 690, 1109
BtsCI GGATG 6 cut(s) 124, 217, 586, 683, 849, 873
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 4 cut(s) 69, 374, 552, 1138
Cac8I GCNNGC 3 cut(s) 311, 570, 712
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 2 cut(s) 201, 1107
CseI GACGC 1 cut(s) 435
Csp6I GTAC 2 cut(s) 611, 1036
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 5 cut(s) 656, 660, 810, 908, 1087
CviQI GTAC 2 cut(s) 611, 1036
DdeI CTNAG 6 cut(s) 72, 266, 318, 327, 603, 1025
DpnI GATC 3 cut(s) 264, 472, 732
DpnII GATC 3 cut(s) 262, 470, 730
DraIII CACNNNGTG 2 cut(s) 301, 942
EaeI YGGCCR 3 cut(s) 97, 490, 688
EagI CGGCCG 1 cut(s) 688
Eam1104I CTCTTC 2 cut(s) 55, 798
EarI CTCTTC 2 cut(s) 55, 798
Ecl136II GAGCTC 2 cut(s) 12, 18
EclXI CGGCCG 1 cut(s) 688
Eco130I CCWWGG 3 cut(s) 403, 563, 877
Eco147I AGGCCT 1 cut(s) 568
Eco24I GRGCYC 2 cut(s) 14, 20
Eco31I GGTCTC 1 cut(s) 1007
Eco52I CGGCCG 1 cut(s) 688
Eco53kI GAGCTC 2 cut(s) 12, 18
Eco81I CCTNAGG 1 cut(s) 327
Eco88I CYCGRG 2 cut(s) 13, 747
EcoICRI GAGCTC 2 cut(s) 12, 18
EcoO109I RGGNCCY 1 cut(s) 1107
EcoRI GAATTC 1 cut(s) 738
EcoRII CCWGG 9 cut(s) 233, 240, 255, 290, 429, 466, 733, 863, 1103
EcoT14I CCWWGG 3 cut(s) 403, 563, 877
EcoT22I ATGCAT 2 cut(s) 661, 758
EcoT38I GRGCYC 2 cut(s) 14, 20
ErhI CCWWGG 3 cut(s) 403, 563, 877
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 5 cut(s) 659, 663, 813, 911, 1090
FaqI GGGAC 2 cut(s) 730, 928
FatI CATG 5 cut(s) 655, 659, 809, 907, 1086
FauI CCCGC 2 cut(s) 192, 707
FblI GTMKAC 1 cut(s) 424
Fnu4HI GCNGC 6 cut(s) 37, 253, 973, 1076, 1079, 1082
FokI GGATG 6 cut(s) 131, 204, 593, 670, 856, 880
FriOI GRGCYC 2 cut(s) 14, 20
Fsp4HI GCNGC 6 cut(s) 37, 253, 973, 1076, 1079, 1082
FspBI CTAG 1 cut(s) 720
GlaI GCGC 1 cut(s) 449
GluI GCNGC 6 cut(s) 37, 253, 973, 1076, 1079, 1082
GsaI CCCAGC 1 cut(s) 915
HaeII RGCGCY 1 cut(s) 451
HaeIII GGCC 6 cut(s) 99, 203, 492, 568, 690, 1109
HapII CCGG 6 cut(s) 147, 156, 204, 221, 451, 687
HgaI GACGC 1 cut(s) 435
HhaI GCGC 1 cut(s) 450
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 5 cut(s) 659, 663, 813, 911, 1090
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HindIII AAGCTT 2 cut(s) 279, 535
HinfI GANTC 6 cut(s) 29, 74, 124, 765, 773, 1115
HpaII CCGG 6 cut(s) 147, 156, 204, 221, 451, 687
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 3 cut(s) 131, 267, 543
Hpy188III TCNNGA 5 cut(s) 347, 392, 728, 749, 819
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 2 cut(s) 369, 889
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 6 cut(s) 313, 557, 584, 659, 756, 1138
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 426, 1081
HpyF3I CTNAG 6 cut(s) 72, 266, 318, 327, 603, 1025
HpySE526I ACGT 1 cut(s) 412
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 5 cut(s) 659, 663, 813, 911, 1090
HspAI GCGC 1 cut(s) 448
Kzo9I GATC 3 cut(s) 262, 470, 730
LmnI GCTCC 1 cut(s) 131
Lsp1109I GCAGC 6 cut(s) 48, 239, 984, 1087, 1090, 1093
LweI GCATC 6 cut(s) 109, 262, 571, 765, 975, 1125
MaeI CTAG 1 cut(s) 720
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 4 cut(s) 75, 676, 883, 1143
MalI GATC 3 cut(s) 264, 472, 732
MboI GATC 3 cut(s) 262, 470, 730
MboII GAAGA 9 cut(s) 36, 42, 153, 156, 159, 162, 492, 641, 785
MflI RGATCY 2 cut(s) 262, 470
MhlI GDGCHC 3 cut(s) 14, 20, 787
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 92, 395, 738
MluI ACGCGT 1 cut(s) 482
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 5 cut(s) 38, 83, 133, 767, 1109
MmeI TCCRAC 2 cut(s) 511, 956
Mox20I TGGCCA 1 cut(s) 99
Mph1103I ATGCAT 2 cut(s) 661, 758
MscI TGGCCA 1 cut(s) 99
MseI TTAA 3 cut(s) 89, 618, 1150
MslI CAYNNNNRTG 1 cut(s) 235
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 6 cut(s) 147, 156, 204, 221, 451, 687
Mva1269I GAATGC 2 cut(s) 758, 853
MvaI CCWGG 9 cut(s) 235, 242, 257, 292, 431, 468, 735, 865, 1105
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 3 cut(s) 193, 426, 1081
NciI CCSGG 4 cut(s) 148, 157, 205, 222
NdeII GATC 3 cut(s) 262, 470, 730
NlaIII CATG 5 cut(s) 659, 663, 813, 911, 1090
NlaIV GGNNCC 2 cut(s) 239, 472
NmuCI GTSAC 2 cut(s) 75, 1143
NsiI ATGCAT 2 cut(s) 661, 758
NspI RCATGY 1 cut(s) 659
OliI CACNNNNGTG 1 cut(s) 235
PaeR7I CTCGAG 2 cut(s) 13, 747
PceI AGGCCT 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PctI GAATGC 2 cut(s) 758, 853
PfeI GAWTC 1 cut(s) 765
PflFI GACNNNGTC 1 cut(s) 28
PflMI CCANNNNNTGG 2 cut(s) 467, 942
PfoI TCCNGGA 1 cut(s) 733
PkrI GCNGC 6 cut(s) 38, 254, 974, 1077, 1080, 1083
PleI GAGTC 5 cut(s) 37, 82, 132, 767, 1109
PpsI GAGTC 5 cut(s) 37, 82, 132, 767, 1109
Psp124BI GAGCTC 2 cut(s) 14, 20
Psp6I CCWGG 9 cut(s) 233, 240, 255, 290, 429, 466, 733, 863, 1103
PspFI CCCAGC 1 cut(s) 911
PspGI CCWGG 9 cut(s) 233, 240, 255, 290, 429, 466, 733, 863, 1103
PspN4I GGNNCC 2 cut(s) 239, 472
PspPI GGNCC 2 cut(s) 201, 1107
PspXI VCTCGAGB 1 cut(s) 13
PsuI RGATCY 2 cut(s) 262, 470
PsyI GACNNNGTC 1 cut(s) 28
RsaI GTAC 2 cut(s) 612, 1037
RsaNI GTAC 2 cut(s) 611, 1036
RseI CAYNNNNRTG 1 cut(s) 235
SacI GAGCTC 2 cut(s) 14, 20
SaqAI TTAA 3 cut(s) 89, 618, 1150
SatI GCNGC 6 cut(s) 37, 253, 973, 1076, 1079, 1082
Sau3AI GATC 3 cut(s) 262, 470, 730
Sau96I GGNCC 2 cut(s) 201, 1107
ScaI AGTACT 1 cut(s) 1037
SchI GAGTC 5 cut(s) 38, 83, 133, 767, 1109
SduI GDGCHC 3 cut(s) 14, 20, 787
SfaNI GCATC 6 cut(s) 109, 262, 571, 765, 975, 1125
SfcI CTRYAG 1 cut(s) 698
Sfr274I CTCGAG 2 cut(s) 13, 747
SlaI CTCGAG 2 cut(s) 13, 747
SmiMI CAYNNNNRTG 1 cut(s) 235
SmlI CTYRAG 4 cut(s) 13, 747, 775, 1049
SmoI CTYRAG 4 cut(s) 13, 747, 775, 1049
SpeI ACTAGT 1 cut(s) 719
Sse9I AATT 3 cut(s) 92, 395, 738
SseBI AGGCCT 1 cut(s) 568
SsiI CCGC 2 cut(s) 185, 714
SspMI CTAG 1 cut(s) 720
SstI GAGCTC 2 cut(s) 14, 20
StuI AGGCCT 1 cut(s) 568
StyI CCWWGG 3 cut(s) 403, 563, 877
TaaI ACNGT 2 cut(s) 369, 889
TaiI ACGT 1 cut(s) 415
TaqI TCGA 3 cut(s) 14, 748, 820
TaqII GACCGA 2 cut(s) 41, 995
TasI AATT 3 cut(s) 92, 395, 738
TatI WGTACW 1 cut(s) 1035
TfiI GAWTC 1 cut(s) 765
Tru1I TTAA 3 cut(s) 89, 618, 1150
Tru9I TTAA 3 cut(s) 89, 618, 1150
TscAI CASTG 4 cut(s) 76, 374, 559, 1145
TseFI GTSAC 2 cut(s) 75, 1143
TseI GCWGC 6 cut(s) 36, 252, 972, 1075, 1078, 1081
Tsp45I GTSAC 2 cut(s) 75, 1143
TspDTI ATGAA 4 cut(s) 126, 371, 860, 884
TspGWI ACGGA 1 cut(s) 463
TspRI CASTG 4 cut(s) 76, 374, 559, 1145
Tth111I GACNNNGTC 1 cut(s) 28
Van91I CCANNNNNTGG 2 cut(s) 467, 942
XapI RAATTY 3 cut(s) 92, 395, 738
XceI RCATGY 1 cut(s) 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 939
XhoI CTCGAG 2 cut(s) 13, 747
XmiI GTMKAC 1 cut(s) 424
XspI CTAG 1 cut(s) 720
ZrmI AGTACT 1 cut(s) 1037
Zsp2I ATGCAT 2 cut(s) 661, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.