Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009219

Physical Location & Seq

Genomic Coordinates Forward (+)

15514857 .. 15515249

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCTGAAACCTTACTTCATAAGGATGAGGCTCCTCTCAGAGAGCAATATTCTAGAGGTGATGTCTGCAGCATTGTGAAGCTGAACAGGTTGCAGGTGAGGCGGAAGCTTTCCCGAGGTGGTGAAAATAAACCACCCCAGGATGTCCCCCGTGGTCACTTGGCCATGGTAGTAGGGAAAGCGAGGAGACGGTTTGTTGTGAGAACGGATTTACTGAACCACCCAGTTTTACGGCAGCTGCTAGACCAAGCATATGAAGAGTATGGTCATGCTAACCCTGGTCCTTTAACTTTACCTTGTGATGAGTTTCTCTTTGAAGATATAGTTCACTCTCTTAGAGGTGGTACAAGAACCAACCAATTCTCTTGCCCCTCATGGCTTTCTGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008361 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0042127 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

130

Amino Acids

14.89

Weight (kDa)

9.18

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	39 - 111	2e-23	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42200 AT3G57920
fragaria_vesca	FvH4_6g22640 FvH4_6g22640
malus_domestica	MD12G1060200.v1.1 MD14G1060200.v1.1
prunus_persica	Prupe.6G256300_v2.0.a1 Prupe.6G256300_v2.0.a1 Prupe.7G074200_v2.0.a1
pyrus_communis	pycom12g05320 pycom14g04880
rosa_chinensis	RchiOBHm_Chr3g0480201
rosa_laevigata	RLG00000023511
rosa_multiflora	Rmu_co8455867.1_g000001 Rmu_sc0006148.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401710
rosa_rugosa	Rorug03G0181000
rosa_samantha	Rh3AG232800 Rh3BG265400 Rh3CG262600 Rh3DG258600
rosa_wichuraiana	Rw3G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	85
AciI	CCGC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	162
AfaI	GTAC	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	138, 277
AluBI	AGCT	3 cut(s)	82, 109, 238
AluI	AGCT	3 cut(s)	82, 109, 238
Alw26I	GTCTC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	69, 235, 238
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	71, 109, 134
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	81, 225, 247
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	140, 279
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	54, 242
BfmI	CTRYAG	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	3 cut(s)	70, 236, 239
BlsI	GCNGC	3 cut(s)	71, 237, 240
Bme1390I	CCNGG	2 cut(s)	140, 279
Bme18I	GGWCC	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	140, 279
BmrI	ACTGGG	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	218
BsaJI	CCNNGG	5 cut(s)	115, 138, 151, 165, 277
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	140, 279
BseDI	CCNNGG	5 cut(s)	115, 138, 151, 165, 277
BseGI	GGATG	2 cut(s)	31, 148
BseMII	CTCAG	2 cut(s)	52, 375
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	2 cut(s)	24, 199
BseXI	GCAGC	3 cut(s)	81, 225, 247
BshFI	GGCC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	181
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	51, 376
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	5 cut(s)	115, 138, 151, 165, 277
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	140, 279
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	38, 335, 384
BstDSI	CCRYGG	2 cut(s)	151, 165
BstF5I	GGATG	2 cut(s)	31, 148
BstMAI	GTCTC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	140, 279
BstSCI	CCNGG	2 cut(s)	138, 277
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	3 cut(s)	81, 225, 247
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	2 cut(s)	151, 165
BtsCI	GGATG	2 cut(s)	31, 148
BveI	ACCTGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	3 cut(s)	166, 269, 375
CviJI	RGCY	6 cut(s)	32, 82, 109, 164, 238, 379
CviKI_1	RGCY	6 cut(s)	32, 82, 109, 164, 238, 379
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	3 cut(s)	38, 335, 384
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	138, 277
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	3 cut(s)	169, 272, 378
FaiI	YATR	8 cut(s)	21, 167, 253, 255, 264, 270, 323, 376
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	165, 268, 374
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	3 cut(s)	70, 236, 239
FokI	GGATG	2 cut(s)	38, 155
Fsp4HI	GCNGC	3 cut(s)	70, 236, 239
FspBI	CTAG	2 cut(s)	54, 242
GluI	GCNGC	3 cut(s)	70, 236, 239
HaeIII	GGCC	1 cut(s)	164
Hin1II	CATG	3 cut(s)	169, 272, 378
HindIII	AAGCTT	1 cut(s)	107
HphI	GGTGA	3 cut(s)	71, 109, 134
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	3 cut(s)	7, 41, 385
Hpy188III	TCNNGA	2 cut(s)	54, 114
Hpy8I	GTNNAC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	69, 94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	3 cut(s)	38, 335, 384
Hsp92II	CATG	3 cut(s)	169, 272, 378
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	7 cut(s)	73, 80, 125, 152, 237, 264, 291
Lsp1109I	GCAGC	3 cut(s)	81, 225, 247
MaeI	CTAG	2 cut(s)	54, 242
MaeIII	GTNAC	1 cut(s)	155
MboII	GAAGA	2 cut(s)	269, 329
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	1 cut(s)	359
MluNI	TGGCCA	1 cut(s)	164
MnlI	CCTC	8 cut(s)	22, 45, 50, 93, 110, 177, 332, 382
Mox20I	TGGCCA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	238
MspR9I	CCNGG	2 cut(s)	140, 279
MvaI	CCWGG	2 cut(s)	140, 279
MwoI	GCNNNNNNNGC	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	253
NlaIII	CATG	3 cut(s)	169, 272, 378
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	155
PaqCI	CACCTGC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	71, 237, 240
Psp6I	CCWGG	2 cut(s)	138, 277
PspGI	CCWGG	2 cut(s)	138, 277
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	3 cut(s)	70, 236, 239
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	140, 279
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	103
SspI	AATATT	1 cut(s)	50
SspMI	CTAG	2 cut(s)	54, 242
StyD4I	CCNGG	2 cut(s)	138, 277
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	192
TasI	AATT	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	69, 235, 238
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	8, 270
TspGWI	ACGGA	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	281
XbaI	TCTAGA	1 cut(s)	53
XspI	CTAG	2 cut(s)	54, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.