Prupe.6G256300_v2.0.a1

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
24912779 .. 24917335
4557 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G256300.2

Sequence Viewer

Length: 1155 bp
ATGACAATCATGGAAATGGGCTCTAGCTCTATGACCGATTCAGGGAGCTCCTCCTCCTCTTCCCCACCTAACTCCTCCACCGAGTCTCTCAACGGCTTGAAATTTGGCCGGAAAATCTACTTTGAGGATGCGGGTCTCGGAGCTGCATATAAATCCGGGTCTGCTGGGTCTTCTTCCTCTGGGGCTACACCGCCCAAGAAGCAAAGGGGTGTGAATTTGGCTCAGTCGGGTCAGCCACCGAGGTGTCAGGTTGAGGGCTGCCAGGTAGATCTGAGTGATGCCAAAGCTTACTATTCCAGGCACAAAGTCTGTGGCTTGCACTCTAAGACCCCCATGGTCATTGTTGCTGGTCTTGAACAGAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGACCAAGGAAAACGTAGTTGCCGTAGACGCCTGGCTGGTCATAATGAGCGCCGCAGAAAGCCACAACCTGGATCCATATTGTCTGCGCGTTTTGGCCGACTTTCTTCATCTATCTATGAAAACAGCAGCAGAGTTGGAAGCTTTCTCATGGACTTCACTGCATACCCAAGGCTTTCTGGGAGGGATGCATGGGCAACCACGAGAACGTCTGAGCGGGTACCTGGAAATCAAAATTCCAATGACACGGGGAAGTTTCTTCAACATCCATGGCAGAGCAACTCTGAGATTACTCCATCAGGCCTTTACCTGCAAGGTTCAGCGGGCAGGAGTAATTATCCTGGTCCTGGAATTCCTCCGGGAGAATGCGTCACAGGAGTCACTGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAACCATGGGGCTCTAGAAACCGAGTATCGGGTGTTGGGATGAACACCGTGATAAACACTCAAGGGCCACCTGTGGGTCAACCGATCACTCATGCTGGGACTGCCAACCACTTTCCGACCACTTCGTGGGGTTTCAAGGGAAATGAAGCAGGTAGCAGCTCACACGAGATGCTTCCTGATCTTGGTCTCGGTCAAATATCGCAGCCTCCTCTTAGTACTCAGTACTCTGGTGTGCTTGAGTTGTCTCAACAGAGCAGCAGGAGGCAGCAACAAATGGAACTTGGACACACCAGGGGCTATGATACCAGCAGTCAGCATATTCACTGGTCACTTTAA

Protein Analysis

385

Amino Acids

41.34

Weight (kDa)

9.47

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 720, 959
Acc65I GGTACC 1 cut(s) 622
AccB1I GGYRCC 1 cut(s) 622
AccB7I CCANNNNNTGG 2 cut(s) 473, 945
AccBSI CCGCTC 1 cut(s) 619
AccI GTMKAC 1 cut(s) 430
AccII CGCG 1 cut(s) 493
AciI CCGC 5 cut(s) 131, 191, 457, 619, 725
AclWI GGATC 2 cut(s) 471, 484
AcoI YGGCCR 2 cut(s) 106, 499
AcsI RAATTY 5 cut(s) 101, 214, 401, 637, 753
AcyI GRCGYC 1 cut(s) 433
AdeI CACNNNGTG 1 cut(s) 945
AfaI GTAC 3 cut(s) 624, 1036, 1043
AfiI CCNNNNNNNGG 7 cut(s) 42, 473, 749, 847, 893, 945, 1001
AgsI TTSAA 4 cut(s) 100, 356, 665, 955
AjnI CCWGG 8 cut(s) 261, 296, 435, 472, 625, 742, 748, 1109
AleI CACNNNNGTG 1 cut(s) 241
AluBI AGCT 8 cut(s) 27, 48, 143, 287, 394, 546, 795, 978
AluI AGCT 8 cut(s) 27, 48, 143, 287, 394, 546, 795, 978
Alw21I GWGCWC 2 cut(s) 50, 802
Alw26I GTCTC 4 cut(s) 90, 140, 1010, 1068
AlwI GGATC 2 cut(s) 471, 484
AoxI GGCC 4 cut(s) 106, 499, 703, 884
ApeKI GCWGC 7 cut(s) 143, 258, 531, 975, 1021, 1074, 1084
ApoI RAATTY 5 cut(s) 101, 214, 401, 637, 753
Asp718I GGTACC 1 cut(s) 622
AspLEI GCGC 2 cut(s) 456, 493
AspS9I GGNCC 2 cut(s) 746, 884
AsuC2I CCSGG 2 cut(s) 157, 762
AvaII GGWCC 1 cut(s) 746
BamHI GGATCC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 622
BanII GRGCYC 3 cut(s) 23, 50, 833
BauI CACGAG 2 cut(s) 604, 983
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 2 cut(s) 50, 802
BbvI GCAGC 7 cut(s) 130, 245, 543, 987, 1033, 1086, 1096
BccI CCATC 1 cut(s) 706
BceAI ACGGC 2 cut(s) 109, 411
BciT130I CCWGG 8 cut(s) 263, 298, 437, 474, 627, 744, 750, 1111
BcnI CCSGG 2 cut(s) 157, 762
BcoDI GTCTC 4 cut(s) 90, 140, 1010, 1068
BfaI CTAG 2 cut(s) 24, 834
BfoI RGCGCY 1 cut(s) 457
BfuAI ACCTGC 2 cut(s) 720, 959
BglII AGATCT 1 cut(s) 268
BisI GCNGC 8 cut(s) 144, 259, 457, 532, 976, 1022, 1075, 1085
BlsI GCNGC 8 cut(s) 145, 260, 458, 533, 977, 1023, 1076, 1086
BmcAI AGTACT 2 cut(s) 1036, 1043
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 2 cut(s) 746, 884
BmiI GGNNCC 2 cut(s) 478, 624
BmsI GCATC 4 cut(s) 118, 268, 580, 978
BpiI GAAGAC 1 cut(s) 162
BpuEI CTTGAG 3 cut(s) 775, 864, 1076
BpuMI CCSGG 2 cut(s) 157, 762
BsaHI GRCGYC 1 cut(s) 433
BsaI GGTCTC 2 cut(s) 140, 1010
BsaJI CCNNGG 7 cut(s) 239, 333, 409, 572, 671, 824, 1110
BsaXI ACNNNNNCTCC 2 cut(s) 756, 786
Bsc4I CCNNNNNNNGG 7 cut(s) 42, 473, 749, 847, 893, 945, 1001
Bse1I ACTGG 1 cut(s) 1148
BseBI CCWGG 8 cut(s) 263, 298, 437, 474, 627, 744, 750, 1111
BseDI CCNNGG 7 cut(s) 239, 333, 409, 572, 671, 824, 1110
BseGI GGATG 4 cut(s) 133, 595, 667, 864
BseLI CCNNNNNNNGG 7 cut(s) 42, 473, 749, 847, 893, 945, 1001
BseMII CTCAG 5 cut(s) 236, 263, 606, 678, 1052
BseNI ACTGG 1 cut(s) 1148
BseRI GAGGAG 5 cut(s) 40, 43, 46, 64, 1017
BseXI GCAGC 7 cut(s) 130, 245, 543, 987, 1033, 1086, 1096
BseYI CCCAGC 2 cut(s) 164, 914
Bsh1236I CGCG 1 cut(s) 493
BshFI GGCC 4 cut(s) 108, 501, 705, 886
BshNI GGYRCC 1 cut(s) 622
BsiHKAI GWGCWC 2 cut(s) 50, 802
BsiSI CCGG 3 cut(s) 109, 156, 761
BslFI GGGAC 1 cut(s) 931
BslI CCNNNNNNNGG 7 cut(s) 42, 473, 749, 847, 893, 945, 1001
BsmAI GTCTC 4 cut(s) 90, 140, 1010, 1068
BsmFI GGGAC 1 cut(s) 931
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 4 cut(s) 108, 501, 705, 886
Bso31I GGTCTC 2 cut(s) 140, 1010
Bsp1286I GDGCHC 4 cut(s) 23, 50, 802, 833
Bsp143I GATC 4 cut(s) 268, 476, 903, 997
Bsp19I CCATGG 3 cut(s) 333, 671, 824
BspACI CCGC 5 cut(s) 131, 191, 457, 619, 725
BspANI GGCC 4 cut(s) 108, 501, 705, 886
BspCNI CTCAG 5 cut(s) 235, 264, 607, 679, 1051
BspFNI CGCG 1 cut(s) 493
BspLI GGNNCC 2 cut(s) 478, 624
BspMI ACCTGC 2 cut(s) 720, 959
BspPI GGATC 2 cut(s) 471, 484
BspT107I GGYRCC 1 cut(s) 622
BspTNI GGTCTC 2 cut(s) 140, 1010
BsrBI CCGCTC 1 cut(s) 619
BsrI ACTGG 1 cut(s) 1148
BssECI CCNNGG 7 cut(s) 239, 333, 409, 572, 671, 824, 1110
BssMI GATC 4 cut(s) 268, 476, 903, 997
BssNI GRCGYC 1 cut(s) 433
BssSI CACGAG 2 cut(s) 604, 983
BssT1I CCWWGG 5 cut(s) 333, 409, 572, 671, 824
Bst2BI CACGAG 2 cut(s) 604, 983
Bst2UI CCWGG 8 cut(s) 263, 298, 437, 474, 627, 744, 750, 1111
Bst4CI ACNGT 2 cut(s) 375, 868
Bst6I CTCTTC 2 cut(s) 64, 813
BstACI GRCGYC 1 cut(s) 433
BstC8I GCNNGC 2 cut(s) 317, 727
BstDEI CTNAG 7 cut(s) 222, 272, 324, 615, 687, 1031, 1038
BstDSI CCRYGG 3 cut(s) 333, 671, 824
BstF5I GGATG 4 cut(s) 133, 595, 667, 864
BstFNI CGCG 1 cut(s) 493
BstH2I RGCGCY 1 cut(s) 457
BstHHI GCGC 2 cut(s) 456, 493
BstKTI GATC 4 cut(s) 271, 479, 906, 1000
BstMAI GTCTC 4 cut(s) 90, 140, 1010, 1068
BstMBI GATC 4 cut(s) 268, 476, 903, 997
BstMWI GCNNNNNNNGC 3 cut(s) 199, 432, 920
BstNI CCWGG 8 cut(s) 263, 298, 437, 474, 627, 744, 750, 1111
BstUI CGCG 1 cut(s) 493
BstV1I GCAGC 7 cut(s) 130, 245, 543, 987, 1033, 1086, 1096
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 2 cut(s) 268, 476
BstYI RGATCY 2 cut(s) 268, 476
BsuRI GGCC 4 cut(s) 108, 501, 705, 886
BtgI CCRYGG 3 cut(s) 333, 671, 824
BtsCI GGATG 4 cut(s) 133, 595, 667, 864
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 4 cut(s) 380, 561, 783, 1141
BveI ACCTGC 2 cut(s) 720, 959
Cac8I GCNNGC 2 cut(s) 317, 727
CfoI GCGC 2 cut(s) 456, 493
Cfr13I GGNCC 2 cut(s) 746, 884
CseI GACGC 2 cut(s) 441, 760
Csp6I GTAC 3 cut(s) 623, 1035, 1042
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 7 cut(s) 10, 334, 553, 594, 672, 825, 911
CviQI GTAC 3 cut(s) 623, 1035, 1042
DdeI CTNAG 7 cut(s) 222, 272, 324, 615, 687, 1031, 1038
DpnI GATC 4 cut(s) 270, 478, 905, 999
DpnII GATC 4 cut(s) 268, 476, 903, 997
DraIII CACNNNGTG 1 cut(s) 945
EaeI YGGCCR 2 cut(s) 106, 499
Eam1104I CTCTTC 2 cut(s) 64, 813
EarI CTCTTC 2 cut(s) 64, 813
Ecl136II GAGCTC 1 cut(s) 48
Eco130I CCWWGG 5 cut(s) 333, 409, 572, 671, 824
Eco147I AGGCCT 1 cut(s) 705
Eco24I GRGCYC 3 cut(s) 23, 50, 833
Eco31I GGTCTC 2 cut(s) 140, 1010
Eco47I GGWCC 1 cut(s) 746
Eco53kI GAGCTC 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 753
EcoRII CCWGG 8 cut(s) 261, 296, 435, 472, 625, 742, 748, 1109
EcoT14I CCWWGG 5 cut(s) 333, 409, 572, 671, 824
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 3 cut(s) 23, 50, 833
ErhI CCWWGG 5 cut(s) 333, 409, 572, 671, 824
FaeI CATG 7 cut(s) 13, 337, 556, 597, 675, 828, 914
FaqI GGGAC 1 cut(s) 931
FatI CATG 7 cut(s) 9, 333, 552, 593, 671, 824, 910
FauI CCCGC 3 cut(s) 124, 612, 718
FblI GTMKAC 1 cut(s) 430
Fnu4HI GCNGC 8 cut(s) 144, 259, 457, 532, 976, 1022, 1075, 1085
FokI GGATG 4 cut(s) 140, 602, 654, 871
FriOI GRGCYC 3 cut(s) 23, 50, 833
Fsp4HI GCNGC 8 cut(s) 144, 259, 457, 532, 976, 1022, 1075, 1085
FspBI CTAG 2 cut(s) 24, 834
GlaI GCGC 2 cut(s) 455, 492
GluI GCNGC 8 cut(s) 144, 259, 457, 532, 976, 1022, 1075, 1085
GsaI CCCAGC 2 cut(s) 168, 918
HaeII RGCGCY 1 cut(s) 457
HaeIII GGCC 4 cut(s) 108, 501, 705, 886
HapII CCGG 3 cut(s) 109, 156, 761
HgaI GACGC 2 cut(s) 441, 760
HhaI GCGC 2 cut(s) 456, 493
Hin1I GRCGYC 1 cut(s) 433
Hin1II CATG 7 cut(s) 13, 337, 556, 597, 675, 828, 914
Hin6I GCGC 2 cut(s) 454, 491
HinP1I GCGC 2 cut(s) 454, 491
HincII GTYRAC 2 cut(s) 821, 899
HindII GTYRAC 2 cut(s) 821, 899
HindIII AAGCTT 2 cut(s) 285, 544
HinfI GANTC 4 cut(s) 38, 83, 780, 788
HpaII CCGG 3 cut(s) 109, 156, 761
Hpy166II GTNNAC 3 cut(s) 431, 821, 899
Hpy188I TCNGA 5 cut(s) 140, 273, 616, 688, 936
Hpy188III TCNNGA 4 cut(s) 353, 398, 834, 995
Hpy8I GTNNAC 3 cut(s) 431, 821, 899
HpyCH4III ACNGT 2 cut(s) 375, 868
HpyCH4IV ACGT 2 cut(s) 418, 611
HpyCH4V TGCA 5 cut(s) 146, 319, 566, 593, 715
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 432, 920
HpyF3I CTNAG 7 cut(s) 222, 272, 324, 615, 687, 1031, 1038
HpySE526I ACGT 2 cut(s) 418, 611
Hsp92I GRCGYC 1 cut(s) 433
Hsp92II CATG 7 cut(s) 13, 337, 556, 597, 675, 828, 914
HspAI GCGC 2 cut(s) 454, 491
KpnI GGTACC 1 cut(s) 626
Kzo9I GATC 4 cut(s) 268, 476, 903, 997
LmnI GCTCC 3 cut(s) 45, 53, 140
Lsp1109I GCAGC 7 cut(s) 130, 245, 543, 987, 1033, 1086, 1096
LweI GCATC 4 cut(s) 118, 268, 580, 978
MaeI CTAG 2 cut(s) 24, 834
MaeII ACGT 2 cut(s) 418, 611
MaeIII GTNAC 3 cut(s) 772, 781, 1146
MalI GATC 4 cut(s) 270, 478, 905, 999
MbiI CCGCTC 1 cut(s) 619
MboI GATC 4 cut(s) 268, 476, 903, 997
MboII GAAGA 6 cut(s) 51, 162, 165, 501, 653, 800
MflI RGATCY 2 cut(s) 268, 476
MhlI GDGCHC 4 cut(s) 23, 50, 802, 833
MluCI AATT 6 cut(s) 101, 214, 401, 637, 736, 753
MlyI GAGTC 3 cut(s) 92, 782, 789
MmeI TCCRAC 2 cut(s) 520, 959
Mph1103I ATGCAT 1 cut(s) 595
MseI TTAA 1 cut(s) 1153
MslI CAYNNNNRTG 2 cut(s) 14, 241
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 3 cut(s) 109, 156, 761
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 8 cut(s) 263, 298, 437, 474, 627, 744, 750, 1111
MvnI CGCG 1 cut(s) 493
MwoI GCNNNNNNNGC 3 cut(s) 199, 432, 920
NciI CCSGG 2 cut(s) 157, 762
NcoI CCATGG 3 cut(s) 333, 671, 824
NdeII GATC 4 cut(s) 268, 476, 903, 997
NlaIII CATG 7 cut(s) 13, 337, 556, 597, 675, 828, 914
NlaIV GGNNCC 2 cut(s) 478, 624
NmuCI GTSAC 3 cut(s) 772, 781, 1146
NsiI ATGCAT 1 cut(s) 595
OliI CACNNNNGTG 1 cut(s) 241
PceI AGGCCT 1 cut(s) 705
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PctI GAATGC 1 cut(s) 773
PfeI GAWTC 1 cut(s) 38
PflMI CCANNNNNTGG 2 cut(s) 473, 945
PfoI TCCNGGA 2 cut(s) 748, 760
PkrI GCNGC 8 cut(s) 145, 260, 458, 533, 977, 1023, 1076, 1086
PleI GAGTC 3 cut(s) 91, 782, 788
PpsI GAGTC 3 cut(s) 91, 782, 788
Psp124BI GAGCTC 1 cut(s) 50
Psp6I CCWGG 8 cut(s) 261, 296, 435, 472, 625, 742, 748, 1109
PspFI CCCAGC 2 cut(s) 164, 914
PspGI CCWGG 8 cut(s) 261, 296, 435, 472, 625, 742, 748, 1109
PspN4I GGNNCC 2 cut(s) 478, 624
PspPI GGNCC 2 cut(s) 746, 884
PsuI RGATCY 2 cut(s) 268, 476
RsaI GTAC 3 cut(s) 624, 1036, 1043
RsaNI GTAC 3 cut(s) 623, 1035, 1042
RseI CAYNNNNRTG 2 cut(s) 14, 241
SacI GAGCTC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 1153
SatI GCNGC 8 cut(s) 144, 259, 457, 532, 976, 1022, 1075, 1085
Sau3AI GATC 4 cut(s) 268, 476, 903, 997
Sau96I GGNCC 2 cut(s) 746, 884
ScaI AGTACT 2 cut(s) 1036, 1043
SchI GAGTC 3 cut(s) 92, 782, 789
SduI GDGCHC 4 cut(s) 23, 50, 802, 833
SfaNI GCATC 4 cut(s) 118, 268, 580, 978
SinI GGWCC 1 cut(s) 746
SmiMI CAYNNNNRTG 2 cut(s) 14, 241
SmlI CTYRAG 3 cut(s) 790, 879, 1055
SmoI CTYRAG 3 cut(s) 790, 879, 1055
Sse9I AATT 6 cut(s) 101, 214, 401, 637, 736, 753
SseBI AGGCCT 1 cut(s) 705
SsiI CCGC 5 cut(s) 131, 191, 457, 619, 725
SspMI CTAG 2 cut(s) 24, 834
SstI GAGCTC 1 cut(s) 50
StuI AGGCCT 1 cut(s) 705
StyI CCWWGG 5 cut(s) 333, 409, 572, 671, 824
TaaI ACNGT 2 cut(s) 375, 868
TaiI ACGT 2 cut(s) 421, 614
TaqII GACCGA 2 cut(s) 50, 998
TasI AATT 6 cut(s) 101, 214, 401, 637, 736, 753
TatI WGTACW 2 cut(s) 1034, 1041
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 1153
Tru9I TTAA 1 cut(s) 1153
TscAI CASTG 4 cut(s) 380, 568, 790, 1148
TseFI GTSAC 3 cut(s) 772, 781, 1146
TseI GCWGC 7 cut(s) 143, 258, 531, 975, 1021, 1074, 1084
Tsp45I GTSAC 3 cut(s) 772, 781, 1146
TspDTI ATGAA 5 cut(s) 377, 501, 537, 875, 978
TspRI CASTG 4 cut(s) 380, 568, 790, 1148
Van91I CCANNNNNTGG 2 cut(s) 473, 945
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 5 cut(s) 101, 214, 401, 637, 753
XbaI TCTAGA 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 430
XspI CTAG 2 cut(s) 24, 834
ZrmI AGTACT 2 cut(s) 1036, 1043
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.