Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009219

Physical Location & Seq

Genomic Coordinates Reverse (-)

24089693 .. 24093227

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTGCTCTCGGACCCAACCCACCCAAATCCGGGTCAGGCTCTGCCGGGTCTTCCTCCTCCGGGGCCACGCCGCCCAAAGAAGCAGAGGAGCGGTGGTGCTGGGTTGGTCCATCAGGGCCAGCCTCCCAGGTGCCAGGTCGAGGGCTGCAACGTAGATCTGAGTGGTGTTAAAGCTTACTATTCCAGGCACAAAGTGTGTGCCATGCACTCCAAGACCCCTACTGTTATTGTTGCCGGCCTTGAACAGAGGTTTTGCCAGCAGTGTAGCAGTCCTGTTTTTGTTGATTTTCATGGAAAGCTGGTCTTGGGTAGTTGTACGCCTCCTGCATTAATGTTCTTGCCTGATGGCTTGTTCTGGGAATTCTCCCAGATAGTTTTTCTTAGAGGCTATTCTCTAAGTTTATTTCATCAACTTCCTGAATTTGACCAAGGGAAACGTAGTTGCCGTAGACGTTTGGCTGGTCATAATGAGCGTAGGAGAAAGCCACAACCTGGATCCATGATGGTCAGCCCGGTGGGTACCAGTTATCCTGGTCCTGGAATTCCTCCGGGAGAATGCGTCACAGGAGTCACCGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAATCAACCATGGGACTCTAGAAACCGCGGTGTTGGGACAAATGCCTTCATAAACACCCAAGGGGCACCCGTGGCTCAATCAATAGCTAATGTTGGCACCATCAATCCATTTCCAACCACATCATGGGGTTTCAAGGGAAATGAGGCTGGTAGCAGTTCGCATCAGATGCTTCCTGATCTGGGTCTTGGTCAAATTTCGCAGCCTCATAACAGTCATTACTCTGGTGAGCTTGAGTTGTCTCAACAGGGTAGGAGGCAGCAAAATATGGAACTTGGAAACTCCAGGGGCTACGACGACTCCAGTCAACACATGCATTGGTCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008361 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0042127 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

310

Amino Acids

33.68

Weight (kDa)

9.13

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	45 - 91	1.7e-18	SBP domain
SBP	PF03110	134 - 162	9.5e-09	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42200 AT3G57920
fragaria_vesca	FvH4_6g22640 FvH4_6g22640
malus_domestica	MD12G1060200.v1.1 MD14G1060200.v1.1
prunus_persica	Prupe.6G256300_v2.0.a1 Prupe.6G256300_v2.0.a1 Prupe.7G074200_v2.0.a1
pyrus_communis	pycom12g05320 pycom14g04880
rosa_chinensis	RchiOBHm_Chr3g0480201
rosa_laevigata	RLG00000023511
rosa_multiflora	Rmu_co8455867.1_g000001 Rmu_sc0006148.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401710
rosa_rugosa	Rorug03G0181000
rosa_samantha	Rh3AG232800 Rh3BG265400 Rh3CG262600 Rh3DG258600
rosa_wichuraiana	Rw3G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	4 cut(s)	132, 521, 670, 701
AccB7I	CCANNNNNTGG	2 cut(s)	494, 729
AccBSI	CCGCTC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	451
AccII	CGCG	1 cut(s)	633
AciI	CCGC	4 cut(s)	73, 93, 631, 633
AclWI	GGATC	2 cut(s)	492, 505
AcsI	RAATTY	4 cut(s)	362, 422, 543, 798
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	2 cut(s)	319, 523
AfiI	CCNNNNNNNGG	8 cut(s)	31, 32, 62, 142, 494, 539, 729, 785
AgsI	TTSAA	2 cut(s)	245, 739
AjnI	CCWGG	7 cut(s)	128, 135, 185, 493, 532, 538, 887
AluBI	AGCT	5 cut(s)	176, 301, 585, 692, 835
AluI	AGCT	5 cut(s)	176, 301, 585, 692, 835
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	1 cut(s)	849
AlwI	GGATC	2 cut(s)	492, 505
AlwNI	CAGNNNCTG	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	3 cut(s)	65, 118, 238
ApeKI	GCWGC	4 cut(s)	4, 147, 805, 862
ApoI	RAATTY	4 cut(s)	362, 422, 543, 798
AseI	ATTAAT	1 cut(s)	332
Asp718I	GGTACC	1 cut(s)	521
AspS9I	GGNCC	6 cut(s)	13, 65, 109, 118, 536, 924
AsuC2I	CCSGG	5 cut(s)	33, 48, 63, 515, 552
AsuHPI	GGTGA	2 cut(s)	565, 842
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	4 cut(s)	13, 109, 536, 924
BaeGI	GKGCMC	1 cut(s)	673
BamHI	GGATCC	1 cut(s)	497
BanI	GGYRCC	4 cut(s)	132, 521, 670, 701
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	3 cut(s)	134, 817, 874
BccI	CCATC	4 cut(s)	120, 341, 499, 713
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	7 cut(s)	130, 137, 187, 495, 534, 540, 889
BcnI	CCSGG	5 cut(s)	33, 48, 63, 515, 552
BcoDI	GTCTC	1 cut(s)	849
BfaI	CTAG	1 cut(s)	624
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	5 cut(s)	5, 73, 148, 806, 863
BlsI	GCNGC	5 cut(s)	6, 74, 149, 807, 864
Bme18I	GGWCC	4 cut(s)	13, 109, 536, 924
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	6 cut(s)	13, 65, 109, 118, 536, 924
BmiI	GGNNCC	8 cut(s)	15, 66, 134, 499, 523, 672, 703, 926
BmsI	GCATC	2 cut(s)	762, 775
BoxI	GACNNNNGTC	1 cut(s)	906
BpiI	GAAGAC	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BpmI	CTGGAG	2 cut(s)	871, 889
BpuEI	CTTGAG	1 cut(s)	857
BpuMI	CCSGG	5 cut(s)	33, 48, 63, 515, 552
BsaJI	CCNNGG	8 cut(s)	62, 128, 430, 614, 631, 664, 675, 888
BsaXI	ACNNNNNCTCC	6 cut(s)	82, 112, 546, 576, 887, 917
Bsc4I	CCNNNNNNNGG	8 cut(s)	31, 32, 62, 142, 494, 539, 729, 785
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	525, 906
BseBI	CCWGG	7 cut(s)	130, 137, 187, 495, 534, 540, 889
BseDI	CCNNGG	8 cut(s)	62, 128, 430, 614, 631, 664, 675, 888
BseLI	CCNNNNNNNGG	8 cut(s)	31, 32, 62, 142, 494, 539, 729, 785
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	525, 906
BseRI	GAGGAG	2 cut(s)	48, 103
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	3 cut(s)	134, 817, 874
BseYI	CCCAGC	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	3 cut(s)	67, 120, 240
BshNI	GGYRCC	4 cut(s)	132, 521, 670, 701
BsiHKAI	GWGCWC	1 cut(s)	592
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	6 cut(s)	32, 47, 62, 237, 515, 551
BslFI	GGGAC	3 cut(s)	632, 655, 910
BslI	CCNNNNNNNGG	8 cut(s)	31, 32, 62, 142, 494, 539, 729, 785
BsmAI	GTCTC	1 cut(s)	849
BsmFI	GGGAC	3 cut(s)	632, 655, 910
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	3 cut(s)	67, 120, 240
BsoBI	CYCGRG	1 cut(s)	580
Bsp1286I	GDGCHC	2 cut(s)	592, 673
Bsp143I	GATC	3 cut(s)	157, 497, 781
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	4 cut(s)	73, 93, 631, 633
BspANI	GGCC	3 cut(s)	67, 120, 240
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	633
BspLI	GGNNCC	8 cut(s)	15, 66, 134, 499, 523, 672, 703, 926
BspPI	GGATC	2 cut(s)	492, 505
BspT107I	GGYRCC	4 cut(s)	132, 521, 670, 701
BsrBI	CCGCTC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	525, 906
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	8 cut(s)	62, 128, 430, 614, 631, 664, 675, 888
BssMI	GATC	3 cut(s)	157, 497, 781
BssT1I	CCWWGG	3 cut(s)	430, 614, 664
Bst2UI	CCWGG	7 cut(s)	130, 137, 187, 495, 534, 540, 889
Bst4CI	ACNGT	2 cut(s)	226, 818
Bst6I	CTCTTC	1 cut(s)	603
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstC8I	GCNNGC	3 cut(s)	122, 238, 260
BstDEI	CTNAG	3 cut(s)	161, 383, 398
BstDSI	CCRYGG	3 cut(s)	614, 631, 675
BstFNI	CGCG	1 cut(s)	633
BstKTI	GATC	3 cut(s)	160, 500, 784
BstMAI	GTCTC	1 cut(s)	849
BstMBI	GATC	3 cut(s)	157, 497, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 772
BstNI	CCWGG	7 cut(s)	130, 137, 187, 495, 534, 540, 889
BstNSI	RCATGY	1 cut(s)	919
BstPAI	GACNNNNGTC	1 cut(s)	906
BstSLI	GKGCMC	1 cut(s)	673
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	3 cut(s)	134, 817, 874
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	2 cut(s)	157, 497
BstYI	RGATCY	2 cut(s)	157, 497
BsuRI	GGCC	3 cut(s)	67, 120, 240
BtgI	CCRYGG	3 cut(s)	614, 631, 675
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	3 cut(s)	122, 238, 260
CaiI	CAGNNNCTG	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	6 cut(s)	13, 65, 109, 118, 536, 924
Cfr42I	CCGCGG	1 cut(s)	634
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	318, 522
CviAII	CATG	6 cut(s)	205, 293, 502, 615, 729, 916
CviQI	GTAC	2 cut(s)	318, 522
DdeI	CTNAG	3 cut(s)	161, 383, 398
DpnI	GATC	3 cut(s)	159, 499, 783
DpnII	GATC	3 cut(s)	157, 497, 781
DraIII	CACNNNGTG	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	3 cut(s)	430, 614, 664
Eco47I	GGWCC	4 cut(s)	13, 109, 536, 924
Eco88I	CYCGRG	1 cut(s)	580
EcoRI	GAATTC	2 cut(s)	362, 543
EcoRII	CCWGG	7 cut(s)	128, 135, 185, 493, 532, 538, 887
EcoT14I	CCWWGG	3 cut(s)	430, 614, 664
EcoT22I	ATGCAT	1 cut(s)	921
ErhI	CCWWGG	3 cut(s)	430, 614, 664
FaeI	CATG	6 cut(s)	208, 296, 505, 618, 732, 919
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	3 cut(s)	632, 655, 910
FatI	CATG	6 cut(s)	204, 292, 501, 614, 728, 915
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	5 cut(s)	5, 73, 148, 806, 863
Fsp4HI	GCNGC	5 cut(s)	5, 73, 148, 806, 863
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	5 cut(s)	5, 73, 148, 806, 863
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	2 cut(s)	871, 889
HaeIII	GGCC	3 cut(s)	67, 120, 240
HapII	CCGG	6 cut(s)	32, 47, 62, 237, 515, 551
HgaI	GACGC	1 cut(s)	550
Hin1II	CATG	6 cut(s)	208, 296, 505, 618, 732, 919
HincII	GTYRAC	1 cut(s)	911
HindII	GTYRAC	1 cut(s)	911
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	4 cut(s)	570, 578, 620, 902
HpaII	CCGG	6 cut(s)	32, 47, 62, 237, 515, 551
HphI	GGTGA	2 cut(s)	565, 842
Hpy166II	GTNNAC	2 cut(s)	452, 911
Hpy188I	TCNGA	3 cut(s)	13, 162, 771
Hpy188III	TCNNGA	3 cut(s)	419, 624, 779
Hpy8I	GTNNAC	2 cut(s)	452, 911
Hpy99I	CGWCG	1 cut(s)	902
HpyAV	CCTTC	1 cut(s)	661
HpyCH4III	ACNGT	2 cut(s)	226, 818
HpyCH4IV	ACGT	3 cut(s)	153, 439, 454
HpyCH4V	TGCA	4 cut(s)	150, 208, 329, 919
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 772
HpyF3I	CTNAG	3 cut(s)	161, 383, 398
HpySE526I	ACGT	3 cut(s)	153, 439, 454
Hsp92II	CATG	6 cut(s)	208, 296, 505, 618, 732, 919
KpnI	GGTACC	1 cut(s)	525
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
KspI	CCGCGG	1 cut(s)	634
Kzo9I	GATC	3 cut(s)	157, 497, 781
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	3 cut(s)	134, 817, 874
LweI	GCATC	2 cut(s)	762, 775
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	3 cut(s)	153, 439, 454
MaeIII	GTNAC	2 cut(s)	562, 571
MalI	GATC	3 cut(s)	159, 499, 783
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	3 cut(s)	157, 497, 781
MboII	GAAGA	2 cut(s)	44, 590
MflI	RGATCY	2 cut(s)	157, 497
MhlI	GDGCHC	2 cut(s)	592, 673
MluCI	AATT	4 cut(s)	362, 422, 543, 798
MlyI	GAGTC	4 cut(s)	572, 579, 614, 896
MmeI	TCCRAC	1 cut(s)	743
Mph1103I	ATGCAT	1 cut(s)	921
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	3 cut(s)	171, 332, 931
MspA1I	CMGCKG	1 cut(s)	633
MspI	CCGG	6 cut(s)	32, 47, 62, 237, 515, 551
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	7 cut(s)	130, 137, 187, 495, 534, 540, 889
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	2 cut(s)	677, 772
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	5 cut(s)	33, 48, 63, 515, 552
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	3 cut(s)	157, 497, 781
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	6 cut(s)	208, 296, 505, 618, 732, 919
NlaIV	GGNNCC	8 cut(s)	15, 66, 134, 499, 523, 672, 703, 926
NmuCI	GTSAC	2 cut(s)	562, 571
NsiI	ATGCAT	1 cut(s)	921
NspI	RCATGY	1 cut(s)	919
PaeR7I	CTCGAG	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PctI	GAATGC	1 cut(s)	563
PdiI	GCCGGC	1 cut(s)	238
PflMI	CCANNNNNTGG	2 cut(s)	494, 729
PfoI	TCCNGGA	2 cut(s)	538, 550
PkrI	GCNGC	5 cut(s)	6, 74, 149, 807, 864
PleI	GAGTC	4 cut(s)	572, 578, 614, 896
PpsI	GAGTC	4 cut(s)	572, 578, 614, 896
PshAI	GACNNNNGTC	1 cut(s)	906
PshBI	ATTAAT	1 cut(s)	332
Psp6I	CCWGG	7 cut(s)	128, 135, 185, 493, 532, 538, 887
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	7 cut(s)	128, 135, 185, 493, 532, 538, 887
PspN4I	GGNNCC	8 cut(s)	15, 66, 134, 499, 523, 672, 703, 926
PspPI	GGNCC	6 cut(s)	13, 65, 109, 118, 536, 924
PspXI	VCTCGAGB	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	157, 497
RsaI	GTAC	2 cut(s)	319, 523
RsaNI	GTAC	2 cut(s)	318, 522
SacII	CCGCGG	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	171, 332, 931
SatI	GCNGC	5 cut(s)	5, 73, 148, 806, 863
Sau3AI	GATC	3 cut(s)	157, 497, 781
Sau96I	GGNCC	6 cut(s)	13, 65, 109, 118, 536, 924
SchI	GAGTC	4 cut(s)	572, 579, 614, 896
SduI	GDGCHC	2 cut(s)	592, 673
SfaNI	GCATC	2 cut(s)	762, 775
Sfr274I	CTCGAG	1 cut(s)	580
Sfr303I	CCGCGG	1 cut(s)	634
SgrBI	CCGCGG	1 cut(s)	634
SinI	GGWCC	4 cut(s)	13, 109, 536, 924
SlaI	CTCGAG	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	580, 836
SmoI	CTYRAG	2 cut(s)	580, 836
Sse9I	AATT	4 cut(s)	362, 422, 543, 798
SsiI	CCGC	4 cut(s)	73, 93, 631, 633
SspMI	CTAG	1 cut(s)	624
StyI	CCWWGG	3 cut(s)	430, 614, 664
TaaI	ACNGT	2 cut(s)	226, 818
TaiI	ACGT	3 cut(s)	156, 442, 457
TaqI	TCGA	2 cut(s)	141, 581
TasI	AATT	4 cut(s)	362, 422, 543, 798
TauI	GCSGC	1 cut(s)	75
Tru1I	TTAA	3 cut(s)	171, 332, 931
Tru9I	TTAA	3 cut(s)	171, 332, 931
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	2 cut(s)	562, 571
TseI	GCWGC	4 cut(s)	4, 147, 805, 862
Tsp45I	GTSAC	2 cut(s)	562, 571
TspDTI	ATGAA	3 cut(s)	281, 398, 643
TspRI	CASTG	1 cut(s)	269
Van91I	CCANNNNNTGG	2 cut(s)	494, 729
VpaK11BI	GGWCC	4 cut(s)	13, 109, 536, 924
VspI	ATTAAT	1 cut(s)	332
XapI	RAATTY	4 cut(s)	362, 422, 543, 798
XbaI	TCTAGA	1 cut(s)	623
XceI	RCATGY	1 cut(s)	919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	726
XhoI	CTCGAG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	451
XspI	CTAG	1 cut(s)	624
Zsp2I	ATGCAT	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.