pycom14g04880

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
4635908 .. 4639193
3286 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g04880.3

Sequence Viewer

Length: 1149 bp
ATGGGCTCGAGTTCTATGACCGAGTCAGGGAGCTCCTCCTCCTCTTCGCCGCCCAACTCGTCAGCCGAGTCACTCAACGGCCTGAAATTCGGCCAAACAATCTACTTTGAGGATGTGGGTTTTGGAGCTCAGCACAAATCATCATCCGGGTCAGCTGCTGGGTCTTCCTCCGCCGGGGCTACGCCGCCCAAGAAGCAACGGGGCGGCGGGAATATGGGTCAGCTGGGTCAGCCGCCGCGGTGTCAGGTGGAAGGCTGCCAGGTAGATCTGAGCGATGCCAAAGCTTACTATTCCAGGCACAAAGTCTGTGGCTTGCACTCTAAAACCCCCACAGTCATTGTTGCTGGTCTTGAACAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATTTGCTTCCTGAATTTGACCAAGGAAAACGTAGTTGTCGTAGACGTTTGGCTGGGCATAATGAGCGTCGTAGAAAGCCACAACCAGATCGATCCATATTGTCTACGCGTTTTGGCCGACTTTCTTCATCTCTCTACGAAAACAGCAACAGAGTTGGAAGCTTTCTGATGGACTTCACTGCATACCCAAGGGTTTCTGGGAGGGATGCATGGACAACAACAAGAACTTCTGAGCGAGCACCTGTTGTTCAAAATGCCAATGACGCAGGGAAGTTTCTCCAACAGCCGTGGCATAGCAACTCTGGGATTACTACATCCGGCTTTTACATGCAAGGTTCAGCAGGTGGGACTAATTATCCTGGTCCTGGAATTCCTCCGGGAGAATGCATCACAGTAGTCGCTGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAACCATGGGGCTCTCGAAACCGAGTATCAGGTGTCGGGATGAATTCCTTGATGAACACCCAAGGGATACCTGTGGCTCAACCAACCCCTCATGTTGCAACCTCCAATCACTTTCCGACCACTTTATGGGGTTTCAAAGGAAATGAAAATGGTAGCAGCTCACACGAGATGCTTCCGGATCTGGGTCTCGGTCAAATCTCGCAGCCGCTTAGCAGTCAGTACTCTGGTGTGCTGGAGCTGTCTCAACAGGGTAGGAGGCAGCAACACATGGAACTCGGACACACCAGGGGCTATGACTCCACCAGTCAGCAGATGAACTGGTCACTTTAA

Protein Analysis

383

Amino Acids

41.1

Weight (kDa)

9.42

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 716
Acc36I ACCTGC 2 cut(s) 369, 716
AccB7I CCANNNNNTGG 1 cut(s) 945
AccI GTMKAC 2 cut(s) 427, 488
AccII CGCG 2 cut(s) 238, 493
AccIII TCCGGA 1 cut(s) 994
AciI CCGC 9 cut(s) 50, 171, 185, 204, 207, 233, 236, 238, 1025
AclWI GGATC 2 cut(s) 471, 1005
AcoI YGGCCR 2 cut(s) 91, 499
AcsI RAATTY 4 cut(s) 86, 398, 753, 862
AfaI GTAC 1 cut(s) 1040
AfiI CCNNNNNNNGG 5 cut(s) 27, 174, 749, 945, 1001
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 3 cut(s) 353, 635, 955
AjnI CCWGG 5 cut(s) 258, 293, 742, 748, 1103
AluBI AGCT 9 cut(s) 33, 128, 155, 223, 284, 546, 795, 978, 1057
AluI AGCT 9 cut(s) 33, 128, 155, 223, 284, 546, 795, 978, 1057
Alw21I GWGCWC 4 cut(s) 35, 130, 625, 802
Alw26I GTCTC 2 cut(s) 1010, 1065
AlwI GGATC 2 cut(s) 471, 1005
AlwNI CAGNNNCTG 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 7
Aor13HI TCCGGA 1 cut(s) 994
AoxI GGCC 3 cut(s) 79, 91, 499
ApeKI GCWGC 5 cut(s) 155, 255, 975, 1021, 1078
ApoI RAATTY 4 cut(s) 86, 398, 753, 862
AspS9I GGNCC 1 cut(s) 746
AsuC2I CCSGG 3 cut(s) 148, 175, 762
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 1 cut(s) 746
BanII GRGCYC 4 cut(s) 8, 35, 130, 833
BauI CACGAG 1 cut(s) 983
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 4 cut(s) 35, 130, 625, 802
BbvI GCAGC 5 cut(s) 142, 242, 987, 1033, 1090
BccI CCATC 1 cut(s) 547
BceAI ACGGC 2 cut(s) 94, 655
BciT130I CCWGG 5 cut(s) 260, 295, 744, 750, 1105
BciVI GTATCC 1 cut(s) 879
BcnI CCSGG 3 cut(s) 148, 175, 762
BcoDI GTCTC 2 cut(s) 1010, 1065
BfuAI ACCTGC 2 cut(s) 369, 716
BfuI GTATCC 1 cut(s) 879
BglII AGATCT 1 cut(s) 265
BlpI GCTNAGC 2 cut(s) 129, 1028
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 8 cut(s) 148, 175, 260, 295, 744, 750, 762, 1105
Bme18I GGWCC 1 cut(s) 746
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 746
BmrFI CCNGG 8 cut(s) 148, 175, 260, 295, 744, 750, 762, 1105
BmsI GCATC 4 cut(s) 265, 580, 780, 978
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 1073
Bpu1102I GCTNAGC 2 cut(s) 129, 1028
BpuEI CTTGAG 1 cut(s) 775
BpuMI CCSGG 3 cut(s) 148, 175, 762
Bsa29I ATCGAT 1 cut(s) 475
BsaI GGTCTC 1 cut(s) 1010
BsaJI CCNNGG 8 cut(s) 174, 236, 406, 572, 671, 824, 880, 1104
BsaWI WCCGGW 1 cut(s) 994
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 174, 749, 945, 1001
Bse1I ACTGG 2 cut(s) 1122, 1142
BseAI TCCGGA 1 cut(s) 994
BseBI CCWGG 5 cut(s) 260, 295, 744, 750, 1105
BseCI ATCGAT 1 cut(s) 475
BseDI CCNNGG 8 cut(s) 174, 236, 406, 572, 671, 824, 880, 1104
BseGI GGATG 5 cut(s) 118, 143, 595, 698, 864
BseLI CCNNNNNNNGG 5 cut(s) 27, 174, 749, 945, 1001
BseMII CTCAG 3 cut(s) 143, 260, 606
BseNI ACTGG 2 cut(s) 1122, 1142
BseRI GAGGAG 3 cut(s) 25, 28, 31
BseXI GCAGC 5 cut(s) 142, 242, 987, 1033, 1090
BseYI CCCAGC 3 cut(s) 158, 223, 437
Bsh1236I CGCG 2 cut(s) 238, 493
BshFI GGCC 3 cut(s) 81, 93, 501
BshVI ATCGAT 1 cut(s) 475
BsiHKAI GWGCWC 4 cut(s) 35, 130, 625, 802
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 5 cut(s) 147, 174, 702, 761, 995
BslFI GGGAC 1 cut(s) 745
BslI CCNNNNNNNGG 5 cut(s) 27, 174, 749, 945, 1001
BsmAI GTCTC 2 cut(s) 1010, 1065
BsmFI GGGAC 1 cut(s) 745
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 3 cut(s) 81, 93, 501
Bso31I GGTCTC 1 cut(s) 1010
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 6 cut(s) 8, 35, 130, 625, 802, 833
Bsp13I TCCGGA 1 cut(s) 994
Bsp143I GATC 4 cut(s) 265, 472, 476, 997
Bsp1720I GCTNAGC 2 cut(s) 129, 1028
Bsp19I CCATGG 1 cut(s) 824
BspACI CCGC 9 cut(s) 50, 171, 185, 204, 207, 233, 236, 238, 1025
BspANI GGCC 3 cut(s) 81, 93, 501
BspCNI CTCAG 3 cut(s) 142, 261, 607
BspDI ATCGAT 1 cut(s) 475
BspEI TCCGGA 1 cut(s) 994
BspFNI CGCG 2 cut(s) 238, 493
BspMI ACCTGC 2 cut(s) 369, 716
BspPI GGATC 2 cut(s) 471, 1005
BspTNI GGTCTC 1 cut(s) 1010
BsrI ACTGG 2 cut(s) 1122, 1142
BssECI CCNNGG 8 cut(s) 174, 236, 406, 572, 671, 824, 880, 1104
BssMI GATC 4 cut(s) 265, 472, 476, 997
BssSI CACGAG 1 cut(s) 983
BssT1I CCWWGG 4 cut(s) 406, 572, 824, 880
Bst2BI CACGAG 1 cut(s) 983
Bst2UI CCWGG 5 cut(s) 260, 295, 744, 750, 1105
Bst4CI ACNGT 3 cut(s) 334, 372, 778
Bst6I CTCTTC 2 cut(s) 49, 813
BstC8I GCNNGC 2 cut(s) 314, 621
BstDEI CTNAG 4 cut(s) 129, 269, 615, 1028
BstDSI CCRYGG 3 cut(s) 236, 671, 824
BstF5I GGATG 5 cut(s) 118, 143, 595, 698, 864
BstFNI CGCG 2 cut(s) 238, 493
BstKTI GATC 4 cut(s) 268, 475, 479, 1000
BstMAI GTCTC 2 cut(s) 1010, 1065
BstMBI GATC 4 cut(s) 265, 472, 476, 997
BstMWI GCNNNNNNNGC 4 cut(s) 193, 229, 448, 647
BstNI CCWGG 5 cut(s) 260, 295, 744, 750, 1105
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 8 cut(s) 146, 173, 258, 293, 742, 748, 760, 1103
BstUI CGCG 2 cut(s) 238, 493
BstV1I GCAGC 5 cut(s) 142, 242, 987, 1033, 1090
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 265, 997
BstYI RGATCY 2 cut(s) 265, 997
Bsu15I ATCGAT 1 cut(s) 475
BsuI GTATCC 1 cut(s) 879
BsuRI GGCC 3 cut(s) 81, 93, 501
BsuTUI ATCGAT 1 cut(s) 475
BtgI CCRYGG 3 cut(s) 236, 671, 824
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 5 cut(s) 118, 143, 595, 698, 864
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 2 cut(s) 377, 561
BveI ACCTGC 2 cut(s) 369, 716
Cac8I GCNNGC 2 cut(s) 314, 621
CaiI CAGNNNCTG 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 746
Cfr42I CCGCGG 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 475
CseI GACGC 2 cut(s) 440, 656
Csp6I GTAC 1 cut(s) 1039
CspCI CAANNNNNGTGG 6 cut(s) 289, 319, 324, 354, 653, 688
CviAII CATG 5 cut(s) 594, 712, 825, 911, 1087
CviQI GTAC 1 cut(s) 1039
DdeI CTNAG 4 cut(s) 129, 269, 615, 1028
DpnI GATC 4 cut(s) 267, 474, 478, 999
DpnII GATC 4 cut(s) 265, 472, 476, 997
EaeI YGGCCR 2 cut(s) 91, 499
Eam1104I CTCTTC 2 cut(s) 49, 813
EarI CTCTTC 2 cut(s) 49, 813
EciI GGCGGA 1 cut(s) 160
Ecl136II GAGCTC 2 cut(s) 33, 128
Eco130I CCWWGG 4 cut(s) 406, 572, 824, 880
Eco24I GRGCYC 4 cut(s) 8, 35, 130, 833
Eco31I GGTCTC 1 cut(s) 1010
Eco47I GGWCC 1 cut(s) 746
Eco53kI GAGCTC 2 cut(s) 33, 128
Eco88I CYCGRG 1 cut(s) 7
EcoICRI GAGCTC 2 cut(s) 33, 128
EcoRI GAATTC 2 cut(s) 753, 862
EcoRII CCWGG 5 cut(s) 258, 293, 742, 748, 1103
EcoT14I CCWWGG 4 cut(s) 406, 572, 824, 880
EcoT22I ATGCAT 2 cut(s) 595, 773
EcoT38I GRGCYC 4 cut(s) 8, 35, 130, 833
ErhI CCWWGG 4 cut(s) 406, 572, 824, 880
FaeI CATG 5 cut(s) 597, 715, 828, 914, 1090
FaqI GGGAC 1 cut(s) 745
FatI CATG 5 cut(s) 593, 711, 824, 910, 1086
FauI CCCGC 1 cut(s) 200
FblI GTMKAC 2 cut(s) 427, 488
FokI GGATG 5 cut(s) 125, 130, 602, 685, 871
FriOI GRGCYC 4 cut(s) 8, 35, 130, 833
GsaI CCCAGC 3 cut(s) 162, 227, 441
GsuI CTGGAG 1 cut(s) 1073
HaeIII GGCC 3 cut(s) 81, 93, 501
HapII CCGG 5 cut(s) 147, 174, 702, 761, 995
HgaI GACGC 2 cut(s) 440, 656
Hin1II CATG 5 cut(s) 597, 715, 828, 914, 1090
HindIII AAGCTT 2 cut(s) 282, 544
HinfI GANTC 4 cut(s) 23, 68, 788, 1115
HpaII CCGG 5 cut(s) 147, 174, 702, 761, 995
Hpy166II GTNNAC 2 cut(s) 428, 489
Hpy188I TCNGA 5 cut(s) 270, 552, 616, 936, 1097
Hpy188III TCNNGA 5 cut(s) 350, 395, 834, 856, 995
Hpy8I GTNNAC 2 cut(s) 428, 489
Hpy99I CGWCG 1 cut(s) 456
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 3 cut(s) 334, 372, 778
HpyCH4IV ACGT 2 cut(s) 415, 430
HpyCH4V TGCA 6 cut(s) 316, 566, 593, 715, 771, 917
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 229, 448, 647
HpyF3I CTNAG 4 cut(s) 129, 269, 615, 1028
HpySE526I ACGT 2 cut(s) 415, 430
Hsp92II CATG 5 cut(s) 597, 715, 828, 914, 1090
Kpn2I TCCGGA 1 cut(s) 994
KspI CCGCGG 1 cut(s) 239
Kzo9I GATC 4 cut(s) 265, 472, 476, 997
LmnI GCTCC 4 cut(s) 30, 38, 125, 1054
Lsp1109I GCAGC 5 cut(s) 142, 242, 987, 1033, 1090
LweI GCATC 4 cut(s) 265, 580, 780, 978
MaeII ACGT 2 cut(s) 415, 430
MaeIII GTNAC 2 cut(s) 69, 1140
MalI GATC 4 cut(s) 267, 474, 478, 999
MboI GATC 4 cut(s) 265, 472, 476, 997
MboII GAAGA 4 cut(s) 36, 156, 501, 800
MflI RGATCY 2 cut(s) 265, 997
MhlI GDGCHC 6 cut(s) 8, 35, 130, 625, 802, 833
MluCI AATT 5 cut(s) 86, 398, 736, 753, 862
MluI ACGCGT 1 cut(s) 491
MlyI GAGTC 4 cut(s) 32, 77, 782, 1109
MmeI TCCRAC 3 cut(s) 520, 688, 959
Mph1103I ATGCAT 2 cut(s) 595, 773
MroI TCCGGA 1 cut(s) 994
MseI TTAA 1 cut(s) 1147
MspA1I CMGCKG 3 cut(s) 155, 223, 238
MspI CCGG 5 cut(s) 147, 174, 702, 761, 995
MspR9I CCNGG 8 cut(s) 148, 175, 260, 295, 744, 750, 762, 1105
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 5 cut(s) 260, 295, 744, 750, 1105
MvnI CGCG 2 cut(s) 238, 493
MwoI GCNNNNNNNGC 4 cut(s) 193, 229, 448, 647
NciI CCSGG 3 cut(s) 148, 175, 762
NcoI CCATGG 1 cut(s) 824
NdeII GATC 4 cut(s) 265, 472, 476, 997
NlaIII CATG 5 cut(s) 597, 715, 828, 914, 1090
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 2 cut(s) 69, 1140
NsiI ATGCAT 2 cut(s) 595, 773
NspI RCATGY 1 cut(s) 715
PaeR7I CTCGAG 1 cut(s) 7
PaqCI CACCTGC 1 cut(s) 716
PcsI WCGNNNNNNNCGW 1 cut(s) 421
PctI GAATGC 1 cut(s) 773
PflFI GACNNNGTC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 945
PfoI TCCNGGA 2 cut(s) 748, 760
PleI GAGTC 4 cut(s) 31, 76, 782, 1109
PpsI GAGTC 4 cut(s) 31, 76, 782, 1109
Psp124BI GAGCTC 2 cut(s) 35, 130
Psp6I CCWGG 5 cut(s) 258, 293, 742, 748, 1103
PspFI CCCAGC 3 cut(s) 158, 223, 437
PspGI CCWGG 5 cut(s) 258, 293, 742, 748, 1103
PspPI GGNCC 1 cut(s) 746
PspXI VCTCGAGB 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 2 cut(s) 265, 997
PsyI GACNNNGTC 1 cut(s) 22
PvuII CAGCTG 2 cut(s) 155, 223
RsaI GTAC 1 cut(s) 1040
RsaNI GTAC 1 cut(s) 1039
SacI GAGCTC 2 cut(s) 35, 130
SacII CCGCGG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 1147
Sau3AI GATC 4 cut(s) 265, 472, 476, 997
Sau96I GGNCC 1 cut(s) 746
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 4 cut(s) 32, 77, 782, 1109
ScrFI CCNGG 8 cut(s) 148, 175, 260, 295, 744, 750, 762, 1105
SduI GDGCHC 6 cut(s) 8, 35, 130, 625, 802, 833
SfaNI GCATC 4 cut(s) 265, 580, 780, 978
Sfr274I CTCGAG 1 cut(s) 7
Sfr303I CCGCGG 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 239
SinI GGWCC 1 cut(s) 746
SlaI CTCGAG 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 7, 790
SmoI CTYRAG 2 cut(s) 7, 790
Sse9I AATT 5 cut(s) 86, 398, 736, 753, 862
SsiI CCGC 9 cut(s) 50, 171, 185, 204, 207, 233, 236, 238, 1025
SstI GAGCTC 2 cut(s) 35, 130
StyD4I CCNGG 8 cut(s) 146, 173, 258, 293, 742, 748, 760, 1103
StyI CCWWGG 4 cut(s) 406, 572, 824, 880
TaaI ACNGT 3 cut(s) 334, 372, 778
TaiI ACGT 2 cut(s) 418, 433
TaqI TCGA 3 cut(s) 8, 475, 835
TaqII GACCGA 2 cut(s) 35, 998
TasI AATT 5 cut(s) 86, 398, 736, 753, 862
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 6 cut(s) 52, 187, 207, 235, 238, 1027
Tru1I TTAA 1 cut(s) 1147
Tru9I TTAA 1 cut(s) 1147
TscAI CASTG 2 cut(s) 377, 568
TseFI GTSAC 2 cut(s) 69, 1140
TseI GCWGC 5 cut(s) 155, 255, 975, 1021, 1078
Tsp45I GTSAC 2 cut(s) 69, 1140
TspDTI ATGAA 6 cut(s) 374, 501, 875, 887, 978, 1148
TspRI CASTG 2 cut(s) 377, 568
Tth111I GACNNNGTC 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 945
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 4 cut(s) 86, 398, 753, 862
XceI RCATGY 1 cut(s) 715
XhoI CTCGAG 1 cut(s) 7
XmiI GTMKAC 2 cut(s) 427, 488
ZrmI AGTACT 1 cut(s) 1040
Zsp2I ATGCAT 2 cut(s) 595, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.