MD14G1060200.v1.1

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
6372863 .. 6376873
4011 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1060200.v1.1.491

Sequence Viewer

Length: 1146 bp
ATGGGCTCGAGTTCTATGACCGAGTCAGGGAGCTCCTCCTCCTCTTCGCCGCCCAACTCGTCAGCCGAGTCACTCAACGGCCTGAAATTCGGCCAAACAATCTACTTTGAGGATGTGGGTTTTGGAGCTCAGCACAAATCATCATCCGGTTCTGCTGCTGGGTCTTCCTCCGCCGGGGCTACGCCGCCCAAGAAGCAACGGGGCGGCGGGAATATGGGTCAGCTGGGTCAGCCGCCGCGGTGTCAGGTAGAAGGCTGCCAGGTAGATCTGAGTGATGCCAAAGCTTACTATTCCAGGCACAAAGTCTGTGGCTTGCACTCTAAAACCCCCACAGTCATTGTTGCTGGTCTTGAACAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATTTGCTTCCTGAATTTGACCAAGGAAAACGTAGTTGTCGTAGACGTTTGGCTGGGCATAATGAGCGTCGTAGAAAGCCACAACCAGGATCCATATTGTCTGCTCGTTTTGGCCGACTTTCTTCATCTCTCTACGAAAACAGCAACAAAGTTGGAAGCTATCTGATGGACTTCACTGCATACCCAAGGGTTTCTGGGAGGGATGCATGGACAACAACAAGAACGTCAGAGCGAGCACCTGTTGTTCAAAATGCCAATGACGCAGGGAAGTTTCTCCAACAGCCGTGGCAGAGCAACTCTGGGATTACTACATCCGGCTTTTACATGCAAGGTTCAGCAGGCGGGACTAGTTATCCTGGTCCTGGAATTCCTCCGGGAGAATGCATCACAGTAGCCACTGACTCAAGCCGTGCTCTCTCTCTTCTGTCAAATCAACCATGGGGCTCTCGAAACCGAGTATCGGGTGTCGGGATGAATTCCTTGATGAACACCCAAGGGATACCTGTGGCTCAACCAACCCCTCATGCTGCGACCTCCAATCACTTTCCGACGACTTTGTGGGGTTTCAAAGGAAATGAAAATGGTAGCAGCTCGCACGAAATGCTTCCGGACCTGGGTCTTGGTCAAATCTCGCAGCCGCTTAGCAGTCAATACTCTGGTGTGCTGGAGCTGTCTCAACAGGGTAGGAGGCAGCAACACATGGAACTCGGACACACCAGGGGCTATGACTCCACCAGTCAGCAGATGAACTGGTCACTTTAA

Protein Analysis

382

Amino Acids

40.84

Weight (kDa)

9.53

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 81 - 154 5.8e-33 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 369
AccI GTMKAC 1 cut(s) 427
AccII CGCG 1 cut(s) 238
AccIII TCCGGA 1 cut(s) 991
AclWI GGATC 2 cut(s) 468, 481
AcoI YGGCCR 2 cut(s) 91, 496
AcsI RAATTY 4 cut(s) 86, 398, 750, 859
AfiI CCNNNNNNNGG 6 cut(s) 27, 174, 470, 746, 844, 998
AgsI TTSAA 3 cut(s) 353, 632, 952
AhlI ACTAGT 1 cut(s) 731
AjnI CCWGG 7 cut(s) 258, 293, 469, 739, 745, 996, 1100
AluBI AGCT 7 cut(s) 33, 128, 223, 284, 543, 975, 1054
AluI AGCT 7 cut(s) 33, 128, 223, 284, 543, 975, 1054
Alw21I GWGCWC 4 cut(s) 35, 130, 622, 799
Alw26I GTCTC 1 cut(s) 1062
AlwI GGATC 2 cut(s) 468, 481
Ama87I CYCGRG 1 cut(s) 7
Aor13HI TCCGGA 1 cut(s) 991
AoxI GGCC 3 cut(s) 79, 91, 496
ApeKI GCWGC 6 cut(s) 155, 255, 911, 972, 1018, 1075
ApoI RAATTY 4 cut(s) 86, 398, 750, 859
Asp700I GAANNNNTTC 1 cut(s) 987
AspS9I GGNCC 2 cut(s) 743, 994
AsuC2I CCSGG 2 cut(s) 175, 759
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 2 cut(s) 743, 994
BamHI GGATCC 1 cut(s) 473
BanII GRGCYC 4 cut(s) 8, 35, 130, 830
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 4 cut(s) 35, 130, 622, 799
BbvI GCAGC 6 cut(s) 142, 242, 898, 984, 1030, 1087
BccI CCATC 1 cut(s) 544
BceAI ACGGC 3 cut(s) 94, 652, 777
BciT130I CCWGG 7 cut(s) 260, 295, 471, 741, 747, 998, 1102
BciVI GTATCC 1 cut(s) 876
BcnI CCSGG 2 cut(s) 175, 759
BcoDI GTCTC 1 cut(s) 1062
BcuI ACTAGT 1 cut(s) 731
BfaI CTAG 1 cut(s) 732
BfuAI ACCTGC 1 cut(s) 369
BfuI GTATCC 1 cut(s) 876
BglII AGATCT 1 cut(s) 265
BlpI GCTNAGC 2 cut(s) 129, 1025
Bme1390I CCNGG 9 cut(s) 175, 260, 295, 471, 741, 747, 759, 998, 1102
Bme18I GGWCC 2 cut(s) 743, 994
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 743, 994
BmiI GGNNCC 1 cut(s) 475
BmrFI CCNGG 9 cut(s) 175, 260, 295, 471, 741, 747, 759, 998, 1102
BmsI GCATC 3 cut(s) 265, 577, 777
BoxI GACNNNNGTC 1 cut(s) 999
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 1070
Bpu1102I GCTNAGC 2 cut(s) 129, 1025
BpuEI CTTGAG 1 cut(s) 772
BpuMI CCSGG 2 cut(s) 175, 759
BsaJI CCNNGG 9 cut(s) 174, 236, 406, 569, 668, 821, 877, 997, 1101
BsaWI WCCGGW 2 cut(s) 146, 991
Bsc4I CCNNNNNNNGG 6 cut(s) 27, 174, 470, 746, 844, 998
Bse1I ACTGG 2 cut(s) 1119, 1139
BseAI TCCGGA 1 cut(s) 991
BseBI CCWGG 7 cut(s) 260, 295, 471, 741, 747, 998, 1102
BseDI CCNNGG 9 cut(s) 174, 236, 406, 569, 668, 821, 877, 997, 1101
BseGI GGATG 5 cut(s) 118, 143, 592, 695, 861
BseLI CCNNNNNNNGG 6 cut(s) 27, 174, 470, 746, 844, 998
BseMII CTCAG 2 cut(s) 143, 260
BseNI ACTGG 2 cut(s) 1119, 1139
BseRI GAGGAG 3 cut(s) 25, 28, 31
BseXI GCAGC 6 cut(s) 142, 242, 898, 984, 1030, 1087
BseYI CCCAGC 3 cut(s) 158, 223, 437
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 3 cut(s) 81, 93, 498
BsiHKAI GWGCWC 4 cut(s) 35, 130, 622, 799
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 5 cut(s) 147, 174, 699, 758, 992
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 6 cut(s) 27, 174, 470, 746, 844, 998
BsmAI GTCTC 1 cut(s) 1062
BsmFI GGGAC 1 cut(s) 742
BsmI GAATGC 1 cut(s) 770
BsnI GGCC 3 cut(s) 81, 93, 498
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 6 cut(s) 8, 35, 130, 622, 799, 830
Bsp13I TCCGGA 1 cut(s) 991
Bsp143I GATC 2 cut(s) 265, 473
Bsp1720I GCTNAGC 2 cut(s) 129, 1025
Bsp19I CCATGG 1 cut(s) 821
BspANI GGCC 3 cut(s) 81, 93, 498
BspCNI CTCAG 2 cut(s) 142, 261
BspEI TCCGGA 1 cut(s) 991
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 475
BspMI ACCTGC 1 cut(s) 369
BspPI GGATC 2 cut(s) 468, 481
BsrI ACTGG 2 cut(s) 1119, 1139
BssECI CCNNGG 9 cut(s) 174, 236, 406, 569, 668, 821, 877, 997, 1101
BssMI GATC 2 cut(s) 265, 473
BssT1I CCWWGG 4 cut(s) 406, 569, 821, 877
Bst2UI CCWGG 7 cut(s) 260, 295, 471, 741, 747, 998, 1102
Bst4CI ACNGT 3 cut(s) 334, 372, 775
Bst6I CTCTTC 2 cut(s) 49, 810
BstAPI GCANNNNNTGC 1 cut(s) 985
BstC8I GCNNGC 4 cut(s) 314, 618, 724, 977
BstDEI CTNAG 3 cut(s) 129, 269, 1025
BstDSI CCRYGG 3 cut(s) 236, 668, 821
BstF5I GGATG 5 cut(s) 118, 143, 592, 695, 861
BstFNI CGCG 1 cut(s) 238
BstKTI GATC 2 cut(s) 268, 476
BstMAI GTCTC 1 cut(s) 1062
BstMBI GATC 2 cut(s) 265, 473
BstMWI GCNNNNNNNGC 5 cut(s) 193, 229, 448, 644, 985
BstNI CCWGG 7 cut(s) 260, 295, 471, 741, 747, 998, 1102
BstNSI RCATGY 1 cut(s) 712
BstPAI GACNNNNGTC 1 cut(s) 999
BstSCI CCNGG 9 cut(s) 173, 258, 293, 469, 739, 745, 757, 996, 1100
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 6 cut(s) 142, 242, 898, 984, 1030, 1087
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 265, 473
BstYI RGATCY 2 cut(s) 265, 473
BsuI GTATCC 1 cut(s) 876
BsuRI GGCC 3 cut(s) 81, 93, 498
BtgI CCRYGG 3 cut(s) 236, 668, 821
BtsCI GGATG 5 cut(s) 118, 143, 592, 695, 861
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 3 cut(s) 377, 558, 780
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 4 cut(s) 314, 618, 724, 977
Cfr13I GGNCC 2 cut(s) 743, 994
Cfr42I CCGCGG 1 cut(s) 239
CseI GACGC 2 cut(s) 440, 653
CspCI CAANNNNNGTGG 6 cut(s) 289, 319, 324, 354, 650, 685
CviAII CATG 5 cut(s) 591, 709, 822, 908, 1084
DdeI CTNAG 3 cut(s) 129, 269, 1025
DpnI GATC 2 cut(s) 267, 475
DpnII GATC 2 cut(s) 265, 473
EaeI YGGCCR 2 cut(s) 91, 496
Eam1104I CTCTTC 2 cut(s) 49, 810
EarI CTCTTC 2 cut(s) 49, 810
EciI GGCGGA 1 cut(s) 160
Ecl136II GAGCTC 2 cut(s) 33, 128
Eco130I CCWWGG 4 cut(s) 406, 569, 821, 877
Eco24I GRGCYC 4 cut(s) 8, 35, 130, 830
Eco47I GGWCC 2 cut(s) 743, 994
Eco53kI GAGCTC 2 cut(s) 33, 128
Eco88I CYCGRG 1 cut(s) 7
EcoICRI GAGCTC 2 cut(s) 33, 128
EcoRI GAATTC 2 cut(s) 750, 859
EcoRII CCWGG 7 cut(s) 258, 293, 469, 739, 745, 996, 1100
EcoT14I CCWWGG 4 cut(s) 406, 569, 821, 877
EcoT22I ATGCAT 2 cut(s) 592, 770
EcoT38I GRGCYC 4 cut(s) 8, 35, 130, 830
ErhI CCWWGG 4 cut(s) 406, 569, 821, 877
FaeI CATG 5 cut(s) 594, 712, 825, 911, 1087
FaqI GGGAC 1 cut(s) 742
FatI CATG 5 cut(s) 590, 708, 821, 907, 1083
FauI CCCGC 2 cut(s) 200, 719
FblI GTMKAC 1 cut(s) 427
FokI GGATG 5 cut(s) 125, 130, 599, 682, 868
FriOI GRGCYC 4 cut(s) 8, 35, 130, 830
FspBI CTAG 1 cut(s) 732
GsaI CCCAGC 3 cut(s) 162, 227, 441
GsuI CTGGAG 1 cut(s) 1070
HaeIII GGCC 3 cut(s) 81, 93, 498
HapII CCGG 5 cut(s) 147, 174, 699, 758, 992
HgaI GACGC 2 cut(s) 440, 653
Hin1II CATG 5 cut(s) 594, 712, 825, 911, 1087
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 4 cut(s) 23, 68, 785, 1112
HpaII CCGG 5 cut(s) 147, 174, 699, 758, 992
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 5 cut(s) 270, 549, 613, 933, 1094
Hpy188III TCNNGA 5 cut(s) 350, 395, 831, 853, 992
Hpy8I GTNNAC 1 cut(s) 428
Hpy99I CGWCG 2 cut(s) 456, 937
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 3 cut(s) 334, 372, 775
HpyCH4IV ACGT 3 cut(s) 415, 430, 608
HpyCH4V TGCA 5 cut(s) 316, 563, 590, 712, 768
HpyF10VI GCNNNNNNNGC 5 cut(s) 193, 229, 448, 644, 985
HpyF3I CTNAG 3 cut(s) 129, 269, 1025
HpySE526I ACGT 3 cut(s) 415, 430, 608
Hsp92II CATG 5 cut(s) 594, 712, 825, 911, 1087
Kpn2I TCCGGA 1 cut(s) 991
KspI CCGCGG 1 cut(s) 239
Kzo9I GATC 2 cut(s) 265, 473
LmnI GCTCC 4 cut(s) 30, 38, 125, 1051
Lsp1109I GCAGC 6 cut(s) 142, 242, 898, 984, 1030, 1087
LweI GCATC 3 cut(s) 265, 577, 777
MaeI CTAG 1 cut(s) 732
MaeII ACGT 3 cut(s) 415, 430, 608
MaeIII GTNAC 2 cut(s) 69, 1137
MalI GATC 2 cut(s) 267, 475
MboI GATC 2 cut(s) 265, 473
MboII GAAGA 4 cut(s) 36, 156, 498, 797
MflI RGATCY 2 cut(s) 265, 473
MhlI GDGCHC 6 cut(s) 8, 35, 130, 622, 799, 830
MluCI AATT 4 cut(s) 86, 398, 750, 859
MlyI GAGTC 4 cut(s) 32, 77, 779, 1106
MmeI TCCRAC 3 cut(s) 517, 685, 956
Mph1103I ATGCAT 2 cut(s) 592, 770
MroI TCCGGA 1 cut(s) 991
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 1 cut(s) 1144
MspA1I CMGCKG 2 cut(s) 223, 238
MspI CCGG 5 cut(s) 147, 174, 699, 758, 992
MspR9I CCNGG 9 cut(s) 175, 260, 295, 471, 741, 747, 759, 998, 1102
Mva1269I GAATGC 1 cut(s) 770
MvaI CCWGG 7 cut(s) 260, 295, 471, 741, 747, 998, 1102
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 5 cut(s) 193, 229, 448, 644, 985
NciI CCSGG 2 cut(s) 175, 759
NcoI CCATGG 1 cut(s) 821
NdeII GATC 2 cut(s) 265, 473
NlaIII CATG 5 cut(s) 594, 712, 825, 911, 1087
NlaIV GGNNCC 1 cut(s) 475
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 2 cut(s) 69, 1137
NsiI ATGCAT 2 cut(s) 592, 770
NspI RCATGY 1 cut(s) 712
PaeR7I CTCGAG 1 cut(s) 7
PcsI WCGNNNNNNNCGW 2 cut(s) 421, 496
PctI GAATGC 1 cut(s) 770
PdmI GAANNNNTTC 1 cut(s) 987
PflFI GACNNNGTC 1 cut(s) 22
PfoI TCCNGGA 2 cut(s) 745, 757
PleI GAGTC 4 cut(s) 31, 76, 779, 1106
PpsI GAGTC 4 cut(s) 31, 76, 779, 1106
PshAI GACNNNNGTC 1 cut(s) 999
Psp124BI GAGCTC 2 cut(s) 35, 130
Psp6I CCWGG 7 cut(s) 258, 293, 469, 739, 745, 996, 1100
PspFI CCCAGC 3 cut(s) 158, 223, 437
PspGI CCWGG 7 cut(s) 258, 293, 469, 739, 745, 996, 1100
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 2 cut(s) 743, 994
PspXI VCTCGAGB 1 cut(s) 7
PsuI RGATCY 2 cut(s) 265, 473
PsyI GACNNNGTC 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 223
SacI GAGCTC 2 cut(s) 35, 130
SacII CCGCGG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 1144
Sau3AI GATC 2 cut(s) 265, 473
Sau96I GGNCC 2 cut(s) 743, 994
SchI GAGTC 4 cut(s) 32, 77, 779, 1106
ScrFI CCNGG 9 cut(s) 175, 260, 295, 471, 741, 747, 759, 998, 1102
SduI GDGCHC 6 cut(s) 8, 35, 130, 622, 799, 830
SfaNI GCATC 3 cut(s) 265, 577, 777
Sfr274I CTCGAG 1 cut(s) 7
Sfr303I CCGCGG 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 239
SinI GGWCC 2 cut(s) 743, 994
SlaI CTCGAG 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 7, 787
SmoI CTYRAG 2 cut(s) 7, 787
SpeI ACTAGT 1 cut(s) 731
Sse9I AATT 4 cut(s) 86, 398, 750, 859
SspMI CTAG 1 cut(s) 732
SstI GAGCTC 2 cut(s) 35, 130
StyD4I CCNGG 9 cut(s) 173, 258, 293, 469, 739, 745, 757, 996, 1100
StyI CCWWGG 4 cut(s) 406, 569, 821, 877
TaaI ACNGT 3 cut(s) 334, 372, 775
TaiI ACGT 3 cut(s) 418, 433, 611
TaqI TCGA 2 cut(s) 8, 832
TaqII GACCGA 1 cut(s) 35
TasI AATT 4 cut(s) 86, 398, 750, 859
TauI GCSGC 6 cut(s) 52, 187, 207, 235, 238, 1024
Tru1I TTAA 1 cut(s) 1144
Tru9I TTAA 1 cut(s) 1144
TscAI CASTG 3 cut(s) 377, 565, 787
TseFI GTSAC 2 cut(s) 69, 1137
TseI GCWGC 6 cut(s) 155, 255, 911, 972, 1018, 1075
Tsp45I GTSAC 2 cut(s) 69, 1137
TspDTI ATGAA 6 cut(s) 374, 498, 872, 884, 975, 1145
TspRI CASTG 3 cut(s) 377, 565, 787
Tth111I GACNNNGTC 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 743, 994
XapI RAATTY 4 cut(s) 86, 398, 750, 859
XceI RCATGY 1 cut(s) 712
XhoI CTCGAG 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 1 cut(s) 732
Zsp2I ATGCAT 2 cut(s) 592, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.