Rmu_sc0006148.1_g000004

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006148.1
Physical Location & Seq
Reverse (-)
24206 .. 27945
3740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006148.1_g000004.1.cds

Sequence Viewer

Length: 1137 bp
atgaccactactgactcaggaggcagctcctcctccccacccaacaactcctccaccgaggagtccctcaacggcctcaaattcggccgcaaaatctactttgaggactctgctctcggacccaacccccccaaatccgggtcagggtctgccgggtcttcctcctccggggccacgccgcccaagaagcagaggagcggtggtggtgctgggttggtccatcagggccaccctccgaggtgccaggtcgagggctgcaacgtagatctgagtggtgttaaagcttactattccaggcacaaagtgtgtgccatgcactccaagacccctactgttattgttgccggccttgaacagaggttttgccagcagtgtagcagatttcatcagcttcctgaatttgaccaagggaaacgtagttgccgtagacgtctggctggtcataatgagcgtaggagaaagccacaacctggatccatgatgtctacacgttttggccgtctctcttcgtctatttatgaaaacaccagccgagttggaagctttctgatggacttcaccgcatacccaagggctgggagagatgaatgggcaactgcaagaacttgtgagcggccacctggaaatcaaactgtcactgccacaggaaagtttcttcaacatccatggcagagcaaccctgagaatactcgatctgatctttacctgcaagggtcagccggtggtaccagttatcctggtcctggaattcctccgggagaatgcgtctcaggagtcaccgactcgagctgtgctctctctcttctgtcaaatcaaccatgggactctagaaaccgcggtgttgggacaaatgccttcataaacacccaaggggcacccgtggctcaatcaatagctaatgttggcaccatcaatccatttccaaccacgtcatggggtttcaagggaaatgaggctggtagcagttcgcatcagatgcttcctgatctgggtcttggtcaaatttcgcagcctcataacagtcattactctagtgagctcgagttgtctcaacagggtaggaggcagcaaaatatggaacttggaaactccaggggctacgactcctccagtcaacacatgaattggtctctttaa

Protein Analysis

378

Amino Acids

40.65

Weight (kDa)

9.34

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 433
Acc36I ACCTGC 1 cut(s) 714
Acc65I GGTACC 1 cut(s) 725
AccB1I GGYRCC 4 cut(s) 240, 725, 874, 905
AccB7I CCANNNNNTGG 3 cut(s) 470, 575, 933
AccBSI CCGCTC 2 cut(s) 198, 613
AccI GTMKAC 2 cut(s) 427, 485
AccII CGCG 1 cut(s) 837
AciI CCGC 7 cut(s) 88, 179, 198, 561, 613, 835, 837
AclWI GGATC 2 cut(s) 468, 481
AcoI YGGCCR 3 cut(s) 85, 496, 614
AcsI RAATTY 4 cut(s) 80, 398, 747, 1002
AcyI GRCGYC 1 cut(s) 430
AdeI CACNNNGTG 1 cut(s) 304
AfaI GTAC 1 cut(s) 727
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 3 cut(s) 353, 659, 943
AjiI CACGTC 1 cut(s) 930
AjnI CCWGG 7 cut(s) 243, 293, 469, 619, 736, 742, 1091
AluBI AGCT 7 cut(s) 27, 284, 391, 543, 789, 896, 1039
AluI AGCT 7 cut(s) 27, 284, 391, 543, 789, 896, 1039
Alw21I GWGCWC 2 cut(s) 796, 1041
Alw26I GTCTC 3 cut(s) 506, 772, 1053
AlwI GGATC 2 cut(s) 468, 481
AlwNI CAGNNNCTG 1 cut(s) 149
Ama87I CYCGRG 2 cut(s) 784, 1040
AoxI GGCC 7 cut(s) 73, 85, 171, 226, 346, 496, 614
ApeKI GCWGC 4 cut(s) 24, 255, 1009, 1066
ApoI RAATTY 4 cut(s) 80, 398, 747, 1002
Asp718I GGTACC 1 cut(s) 725
AspS9I GGNCC 5 cut(s) 119, 171, 217, 226, 740
AsuC2I CCSGG 4 cut(s) 139, 154, 169, 756
AsuHPI GGTGA 2 cut(s) 550, 769
AvaI CYCGRG 2 cut(s) 784, 1040
AvaII GGWCC 3 cut(s) 119, 217, 740
BaeGI GKGCMC 1 cut(s) 877
BamHI GGATCC 1 cut(s) 473
BanI GGYRCC 4 cut(s) 240, 725, 874, 905
BanII GRGCYC 1 cut(s) 1041
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 796, 1041
BbvI GCAGC 4 cut(s) 36, 242, 1021, 1078
BccI CCATC 3 cut(s) 228, 544, 917
BceAI ACGGC 3 cut(s) 88, 408, 483
BciT130I CCWGG 7 cut(s) 245, 295, 471, 621, 738, 744, 1093
BcnI CCSGG 4 cut(s) 139, 154, 169, 756
BcoDI GTCTC 3 cut(s) 506, 772, 1053
BfaI CTAG 2 cut(s) 828, 1032
BfuAI ACCTGC 1 cut(s) 714
BglII AGATCT 1 cut(s) 265
BisI GCNGC 7 cut(s) 25, 88, 179, 256, 614, 1010, 1067
BlsI GCNGC 7 cut(s) 26, 89, 180, 257, 615, 1011, 1068
Bme18I GGWCC 3 cut(s) 119, 217, 740
BmeT110I CYCGRG 2 cut(s) 784, 1040
BmgBI CACGTC 1 cut(s) 930
BmgT120I GGNCC 5 cut(s) 119, 171, 217, 226, 740
BmiI GGNNCC 7 cut(s) 121, 172, 242, 475, 727, 876, 907
BmsI GCATC 2 cut(s) 966, 979
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 778, 810
BpmI CTGGAG 2 cut(s) 1075, 1093
BpuMI CCSGG 4 cut(s) 139, 154, 169, 756
BsaHI GRCGYC 1 cut(s) 430
BsaXI ACNNNNNCTCC 8 cut(s) 35, 65, 187, 217, 750, 780, 1091, 1121
Bse118I RCCGGY 2 cut(s) 344, 719
Bse1I ACTGG 2 cut(s) 729, 1110
BseBI CCWGG 7 cut(s) 245, 295, 471, 621, 738, 744, 1093
BseGI GGATG 1 cut(s) 661
BseMII CTCAG 4 cut(s) 30, 260, 672, 783
BseNI ACTGG 2 cut(s) 729, 1110
BseRI GAGGAG 7 cut(s) 19, 22, 40, 74, 154, 208, 1096
BseSI GKGCMC 1 cut(s) 877
BseX3I CGGCCG 1 cut(s) 85
BseXI GCAGC 4 cut(s) 36, 242, 1021, 1078
BseYI CCCAGC 2 cut(s) 209, 575
Bsh1236I CGCG 1 cut(s) 837
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 7 cut(s) 75, 87, 173, 228, 348, 498, 616
BshNI GGYRCC 4 cut(s) 240, 725, 874, 905
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 796, 1041
BsiHKCI CYCGRG 2 cut(s) 784, 1040
BsiSI CCGG 6 cut(s) 138, 153, 168, 345, 720, 755
BslFI GGGAC 3 cut(s) 49, 836, 859
BsmAI GTCTC 3 cut(s) 506, 772, 1053
BsmBI CGTCTC 2 cut(s) 506, 772
BsmFI GGGAC 3 cut(s) 49, 836, 859
BsmI GAATGC 1 cut(s) 767
BsnI GGCC 7 cut(s) 75, 87, 173, 228, 348, 498, 616
BsoBI CYCGRG 2 cut(s) 784, 1040
Bsp1286I GDGCHC 3 cut(s) 796, 877, 1041
Bsp143I GATC 5 cut(s) 265, 473, 692, 697, 985
Bsp19I CCATGG 2 cut(s) 665, 818
BspACI CCGC 7 cut(s) 88, 179, 198, 561, 613, 835, 837
BspANI GGCC 7 cut(s) 75, 87, 173, 228, 348, 498, 616
BspCNI CTCAG 4 cut(s) 29, 261, 673, 782
BspFNI CGCG 1 cut(s) 837
BspLI GGNNCC 7 cut(s) 121, 172, 242, 475, 727, 876, 907
BspMI ACCTGC 1 cut(s) 714
BspPI GGATC 2 cut(s) 468, 481
BspT107I GGYRCC 4 cut(s) 240, 725, 874, 905
BsrBI CCGCTC 2 cut(s) 198, 613
BsrFI RCCGGY 2 cut(s) 344, 719
BsrI ACTGG 2 cut(s) 729, 1110
BssAI RCCGGY 2 cut(s) 344, 719
BssMI GATC 5 cut(s) 265, 473, 692, 697, 985
BssNI GRCGYC 1 cut(s) 430
BssT1I CCWWGG 5 cut(s) 406, 569, 665, 818, 868
Bst2UI CCWGG 7 cut(s) 245, 295, 471, 621, 738, 744, 1093
Bst4CI ACNGT 3 cut(s) 334, 634, 1022
Bst6I CTCTTC 2 cut(s) 511, 807
BstACI GRCGYC 1 cut(s) 430
BstAPI GCANNNNNTGC 1 cut(s) 976
BstC8I GCNNGC 2 cut(s) 346, 368
BstDEI CTNAG 4 cut(s) 16, 269, 681, 769
BstDSI CCRYGG 4 cut(s) 665, 818, 835, 879
BstF5I GGATG 1 cut(s) 661
BstFNI CGCG 1 cut(s) 837
BstKTI GATC 5 cut(s) 268, 476, 695, 700, 988
BstMAI GTCTC 3 cut(s) 506, 772, 1053
BstMBI GATC 5 cut(s) 265, 473, 692, 697, 985
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 3 cut(s) 187, 881, 976
BstNI CCWGG 7 cut(s) 245, 295, 471, 621, 738, 744, 1093
BstSLI GKGCMC 1 cut(s) 877
BstUI CGCG 1 cut(s) 837
BstV1I GCAGC 4 cut(s) 36, 242, 1021, 1078
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 2 cut(s) 265, 473
BstYI RGATCY 2 cut(s) 265, 473
BstZI CGGCCG 1 cut(s) 85
BsuRI GGCC 7 cut(s) 75, 87, 173, 228, 348, 498, 616
BtgI CCRYGG 4 cut(s) 665, 818, 835, 879
BtrI CACGTC 1 cut(s) 930
BtsCI GGATG 1 cut(s) 661
BtsI GCAGTG 2 cut(s) 377, 636
BtsIMutI CAGTG 2 cut(s) 377, 636
BveI ACCTGC 1 cut(s) 714
Cac8I GCNNGC 2 cut(s) 346, 368
CaiI CAGNNNCTG 1 cut(s) 149
Cfr10I RCCGGY 2 cut(s) 344, 719
Cfr13I GGNCC 5 cut(s) 119, 171, 217, 226, 740
Cfr42I CCGCGG 1 cut(s) 838
CseI GACGC 1 cut(s) 754
Csp6I GTAC 1 cut(s) 726
CviAII CATG 6 cut(s) 313, 478, 666, 819, 933, 1120
CviQI GTAC 1 cut(s) 726
DdeI CTNAG 4 cut(s) 16, 269, 681, 769
DpnI GATC 5 cut(s) 267, 475, 694, 699, 987
DpnII GATC 5 cut(s) 265, 473, 692, 697, 985
DraIII CACNNNGTG 1 cut(s) 304
EaeI YGGCCR 3 cut(s) 85, 496, 614
EagI CGGCCG 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 511, 807
EarI CTCTTC 2 cut(s) 511, 807
Ecl136II GAGCTC 1 cut(s) 1039
EclXI CGGCCG 1 cut(s) 85
Eco130I CCWWGG 5 cut(s) 406, 569, 665, 818, 868
Eco24I GRGCYC 1 cut(s) 1041
Eco47I GGWCC 3 cut(s) 119, 217, 740
Eco52I CGGCCG 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 1039
Eco88I CYCGRG 2 cut(s) 784, 1040
EcoICRI GAGCTC 1 cut(s) 1039
EcoRI GAATTC 1 cut(s) 747
EcoRII CCWGG 7 cut(s) 243, 293, 469, 619, 736, 742, 1091
EcoT14I CCWWGG 5 cut(s) 406, 569, 665, 818, 868
EcoT38I GRGCYC 1 cut(s) 1041
ErhI CCWWGG 5 cut(s) 406, 569, 665, 818, 868
Esp3I CGTCTC 2 cut(s) 506, 772
FaeI CATG 6 cut(s) 316, 481, 669, 822, 936, 1123
FaqI GGGAC 3 cut(s) 49, 836, 859
FatI CATG 6 cut(s) 312, 477, 665, 818, 932, 1119
FblI GTMKAC 2 cut(s) 427, 485
Fnu4HI GCNGC 7 cut(s) 25, 88, 179, 256, 614, 1010, 1067
FokI GGATG 1 cut(s) 648
FriOI GRGCYC 1 cut(s) 1041
Fsp4HI GCNGC 7 cut(s) 25, 88, 179, 256, 614, 1010, 1067
FspBI CTAG 2 cut(s) 828, 1032
GluI GCNGC 7 cut(s) 25, 88, 179, 256, 614, 1010, 1067
GsaI CCCAGC 2 cut(s) 213, 579
GsuI CTGGAG 2 cut(s) 1075, 1093
HaeIII GGCC 7 cut(s) 75, 87, 173, 228, 348, 498, 616
HapII CCGG 6 cut(s) 138, 153, 168, 345, 720, 755
HgaI GACGC 1 cut(s) 754
Hin1I GRCGYC 1 cut(s) 430
Hin1II CATG 6 cut(s) 316, 481, 669, 822, 936, 1123
HincII GTYRAC 1 cut(s) 1115
HindII GTYRAC 1 cut(s) 1115
HindIII AAGCTT 2 cut(s) 282, 541
HinfI GANTC 7 cut(s) 14, 62, 107, 774, 782, 824, 1103
HpaII CCGG 6 cut(s) 138, 153, 168, 345, 720, 755
HphI GGTGA 2 cut(s) 550, 769
Hpy166II GTNNAC 3 cut(s) 428, 486, 1115
Hpy188I TCNGA 6 cut(s) 119, 237, 270, 549, 697, 975
Hpy188III TCNNGA 5 cut(s) 18, 395, 771, 828, 983
Hpy8I GTNNAC 3 cut(s) 428, 486, 1115
HpyAV CCTTC 1 cut(s) 865
HpyCH4III ACNGT 3 cut(s) 334, 634, 1022
HpyCH4IV ACGT 5 cut(s) 261, 415, 430, 490, 929
HpyCH4V TGCA 4 cut(s) 258, 316, 599, 709
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 881, 976
HpyF3I CTNAG 4 cut(s) 16, 269, 681, 769
HpySE526I ACGT 5 cut(s) 261, 415, 430, 490, 929
Hsp92I GRCGYC 1 cut(s) 430
Hsp92II CATG 6 cut(s) 316, 481, 669, 822, 936, 1123
KpnI GGTACC 1 cut(s) 729
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
KspI CCGCGG 1 cut(s) 838
Kzo9I GATC 5 cut(s) 265, 473, 692, 697, 985
LmnI GCTCC 2 cut(s) 32, 195
Lsp1109I GCAGC 4 cut(s) 36, 242, 1021, 1078
LweI GCATC 2 cut(s) 966, 979
MaeI CTAG 2 cut(s) 828, 1032
MaeII ACGT 5 cut(s) 261, 415, 430, 490, 929
MaeIII GTNAC 2 cut(s) 634, 775
MalI GATC 5 cut(s) 267, 475, 694, 699, 987
MbiI CCGCTC 2 cut(s) 198, 613
MboI GATC 5 cut(s) 265, 473, 692, 697, 985
MboII GAAGA 4 cut(s) 150, 498, 647, 794
MflI RGATCY 2 cut(s) 265, 473
MhlI GDGCHC 3 cut(s) 796, 877, 1041
MluCI AATT 5 cut(s) 80, 398, 747, 1002, 1123
MlyI GAGTC 7 cut(s) 8, 71, 101, 776, 783, 818, 1097
MmeI TCCRAC 2 cut(s) 517, 947
MroNI GCCGGC 1 cut(s) 344
MseI TTAA 2 cut(s) 279, 1135
MspA1I CMGCKG 1 cut(s) 837
MspI CCGG 6 cut(s) 138, 153, 168, 345, 720, 755
Mva1269I GAATGC 1 cut(s) 767
MvaI CCWGG 7 cut(s) 245, 295, 471, 621, 738, 744, 1093
MvnI CGCG 1 cut(s) 837
MwoI GCNNNNNNNGC 3 cut(s) 187, 881, 976
NaeI GCCGGC 1 cut(s) 346
NciI CCSGG 4 cut(s) 139, 154, 169, 756
NcoI CCATGG 2 cut(s) 665, 818
NdeII GATC 5 cut(s) 265, 473, 692, 697, 985
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 6 cut(s) 316, 481, 669, 822, 936, 1123
NlaIV GGNNCC 7 cut(s) 121, 172, 242, 475, 727, 876, 907
NmeAIII GCCGAG 1 cut(s) 557
NmuCI GTSAC 2 cut(s) 634, 775
PaeR7I CTCGAG 2 cut(s) 784, 1040
PcsI WCGNNNNNNNCGW 2 cut(s) 421, 496
PctI GAATGC 1 cut(s) 767
PdiI GCCGGC 1 cut(s) 346
PflMI CCANNNNNTGG 3 cut(s) 470, 575, 933
PfoI TCCNGGA 2 cut(s) 742, 754
PkrI GCNGC 7 cut(s) 26, 89, 180, 257, 615, 1011, 1068
PleI GAGTC 7 cut(s) 8, 70, 101, 776, 782, 818, 1097
PpsI GAGTC 7 cut(s) 8, 70, 101, 776, 782, 818, 1097
Psp124BI GAGCTC 1 cut(s) 1041
Psp6I CCWGG 7 cut(s) 243, 293, 469, 619, 736, 742, 1091
PspFI CCCAGC 2 cut(s) 209, 575
PspGI CCWGG 7 cut(s) 243, 293, 469, 619, 736, 742, 1091
PspN4I GGNNCC 7 cut(s) 121, 172, 242, 475, 727, 876, 907
PspPI GGNCC 5 cut(s) 119, 171, 217, 226, 740
PspXI VCTCGAGB 2 cut(s) 784, 1040
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 2 cut(s) 265, 473
RsaI GTAC 1 cut(s) 727
RsaNI GTAC 1 cut(s) 726
SacI GAGCTC 1 cut(s) 1041
SacII CCGCGG 1 cut(s) 838
SaqAI TTAA 2 cut(s) 279, 1135
SatI GCNGC 7 cut(s) 25, 88, 179, 256, 614, 1010, 1067
Sau3AI GATC 5 cut(s) 265, 473, 692, 697, 985
Sau96I GGNCC 5 cut(s) 119, 171, 217, 226, 740
SchI GAGTC 7 cut(s) 8, 71, 101, 776, 783, 818, 1097
SduI GDGCHC 3 cut(s) 796, 877, 1041
SfaNI GCATC 2 cut(s) 966, 979
Sfr274I CTCGAG 2 cut(s) 784, 1040
Sfr303I CCGCGG 1 cut(s) 838
SgrBI CCGCGG 1 cut(s) 838
SinI GGWCC 3 cut(s) 119, 217, 740
SlaI CTCGAG 2 cut(s) 784, 1040
SmlI CTYRAG 2 cut(s) 784, 1040
SmoI CTYRAG 2 cut(s) 784, 1040
Sse9I AATT 5 cut(s) 80, 398, 747, 1002, 1123
SsiI CCGC 7 cut(s) 88, 179, 198, 561, 613, 835, 837
SspMI CTAG 2 cut(s) 828, 1032
SstI GAGCTC 1 cut(s) 1041
StyI CCWWGG 5 cut(s) 406, 569, 665, 818, 868
TaaI ACNGT 3 cut(s) 334, 634, 1022
TaiI ACGT 5 cut(s) 264, 418, 433, 493, 932
TaqI TCGA 4 cut(s) 249, 691, 785, 1041
TasI AATT 5 cut(s) 80, 398, 747, 1002, 1123
TauI GCSGC 3 cut(s) 90, 181, 616
Tru1I TTAA 2 cut(s) 279, 1135
Tru9I TTAA 2 cut(s) 279, 1135
TscAI CASTG 2 cut(s) 377, 643
TseFI GTSAC 2 cut(s) 634, 775
TseI GCWGC 4 cut(s) 24, 255, 1009, 1066
Tsp45I GTSAC 2 cut(s) 634, 775
TspDTI ATGAA 5 cut(s) 374, 534, 600, 847, 1136
TspRI CASTG 2 cut(s) 377, 643
Van91I CCANNNNNTGG 3 cut(s) 470, 575, 933
VpaK11BI GGWCC 3 cut(s) 119, 217, 740
XapI RAATTY 4 cut(s) 80, 398, 747, 1002
XbaI TCTAGA 1 cut(s) 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 930
XhoI CTCGAG 2 cut(s) 784, 1040
XmiI GTMKAC 2 cut(s) 427, 485
XspI CTAG 2 cut(s) 828, 1032
ZraI GACGTC 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.