Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009219

Physical Location & Seq

Genomic Coordinates Forward (+)

7012604 .. 7014136

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1060200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCATGTAATACTTTGCTTCAGGATGTACTGCTGTGGAGTGGCAGCAAACTTGTACACGGTATTGTCTCTTGTTTTTGTTTTTGTCGGTTTCATTTACTTCCTGAATTTGATCAAGGAAAACGTAGTTGTCGTAGACGCTTGGCTGGGCATAATGAGCGTCGTAGAAAACCACCTCCAGGATCCATACTGTCTACGCGTGGCAGACTTTCTTCGTCTCTCTACGAAAACAGCAGCAGAATTGGAAGCTTTCTGATGGACTTCACTGCATACCCAAGGTTTTCTGGGAGGGATACATGGACAACAACGACAACAAGAACCTCTGAGCGAGCACCTGTTAATCAAAATGCCAATGACGCAGGGAAGTTTCTACAACAGCCGTGGCAGAGCAACTCTGAGATTTCTACATCCGGCTTTTACCTACAAGGTTCAGCAGGCGGGACTAGTTATCCTGGTCCTGGAATTCCTCCAGGAGAATGTGTCACAGTAGTCACTGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAGCCATGGGGTTCTCGAAACCGAGTATTGGGTGCTGGGATGAATTCCTTGATGAACACTCAAGGGGTACCTGTGGCTCAACCAGTCCCTCATTCTGCAACCTCCAATCACTTTCCGACCACTTCGTGGGGTTTCAAAGGAAATGAAAATGGTAGCAGCTCACACGGGATGCTTCCAGATCTGGGTCTCGGTCAAATCTCGCAGCCGCTTAGCAGTCAGTACTCTGGTGTGCTGGAGCTGTCTCAACAGGGTAGGAGGCAGCAACACATGGAACTCGGACACACCAGGGGCTATGACTCCACCAGTCAGCAGATGCACTGGTCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008361 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0042127 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

286

Amino Acids

31.17

Weight (kDa)

9.37

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	19 - 57	8.9e-09	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42200 AT3G57920
fragaria_vesca	FvH4_6g22640 FvH4_6g22640
malus_domestica	MD12G1060200.v1.1 MD14G1060200.v1.1
prunus_persica	Prupe.6G256300_v2.0.a1 Prupe.6G256300_v2.0.a1 Prupe.7G074200_v2.0.a1
pyrus_communis	pycom12g05320 pycom14g04880
rosa_chinensis	RchiOBHm_Chr3g0480201
rosa_laevigata	RLG00000023511
rosa_multiflora	Rmu_co8455867.1_g000001 Rmu_sc0006148.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401710
rosa_rugosa	Rorug03G0181000
rosa_samantha	Rh3AG232800 Rh3BG265400 Rh3CG262600 Rh3DG258600
rosa_wichuraiana	Rw3G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	595
AccB1I	GGYRCC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	654
AccI	GTMKAC	2 cut(s)	136, 194
AccII	CGCG	1 cut(s)	199
AciI	CCGC	2 cut(s)	438, 734
AclWI	GGATC	2 cut(s)	177, 190
AcsI	RAATTY	3 cut(s)	107, 462, 571
AcuI	CTGAAG	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	654
AfaI	GTAC	4 cut(s)	30, 57, 597, 749
AfiI	CCNNNNNNNGG	5 cut(s)	179, 458, 556, 654, 710
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	664
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	5 cut(s)	178, 451, 457, 469, 812
AluBI	AGCT	4 cut(s)	249, 504, 687, 766
AluI	AGCT	4 cut(s)	249, 504, 687, 766
Alw21I	GWGCWC	2 cut(s)	334, 511
Alw26I	GTCTC	4 cut(s)	73, 222, 719, 774
AlwI	GGATC	2 cut(s)	177, 190
ApeKI	GCWGC	5 cut(s)	45, 234, 684, 730, 787
ApoI	RAATTY	3 cut(s)	107, 462, 571
Asp718I	GGTACC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	455
BamHI	GGATCC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	595
Bbv12I	GWGCWC	2 cut(s)	334, 511
BbvI	GCAGC	5 cut(s)	57, 246, 696, 742, 799
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	5 cut(s)	180, 453, 459, 471, 814
BciVI	GTATCC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	4 cut(s)	73, 222, 719, 774
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	286
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	6 cut(s)	46, 235, 685, 731, 734, 788
BlpI	GCTNAGC	1 cut(s)	737
BlsI	GCNGC	6 cut(s)	47, 236, 686, 732, 735, 789
BmcAI	AGTACT	1 cut(s)	749
Bme1390I	CCNGG	5 cut(s)	180, 453, 459, 471, 814
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	184, 597
BmrFI	CCNGG	5 cut(s)	180, 453, 459, 471, 814
BmsI	GCATC	2 cut(s)	687, 831
BpmI	CTGGAG	3 cut(s)	162, 453, 782
Bpu1102I	GCTNAGC	1 cut(s)	737
BpuEI	CTTGAG	2 cut(s)	484, 573
BsaI	GGTCTC	1 cut(s)	719
BsaJI	CCNNGG	4 cut(s)	275, 380, 533, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	5 cut(s)	179, 458, 556, 654, 710
Bse1I	ACTGG	3 cut(s)	611, 831, 851
BseBI	CCWGG	5 cut(s)	180, 453, 459, 471, 814
BseDI	CCNNGG	4 cut(s)	275, 380, 533, 813
BseGI	GGATG	4 cut(s)	31, 407, 573, 702
BseLI	CCNNNNNNNGG	5 cut(s)	179, 458, 556, 654, 710
BseMII	CTCAG	2 cut(s)	315, 387
BseNI	ACTGG	3 cut(s)	611, 831, 851
BseXI	GCAGC	5 cut(s)	57, 246, 696, 742, 799
BseYI	CCCAGC	2 cut(s)	146, 563
Bsh1236I	CGCG	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	2 cut(s)	334, 511
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	2 cut(s)	454, 599
BslI	CCNNNNNNNGG	5 cut(s)	179, 458, 556, 654, 710
BsmAI	GTCTC	4 cut(s)	73, 222, 719, 774
BsmBI	CGTCTC	1 cut(s)	222
BsmFI	GGGAC	2 cut(s)	454, 599
Bso31I	GGTCTC	1 cut(s)	719
Bsp1286I	GDGCHC	2 cut(s)	334, 511
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	112, 182, 706
Bsp1720I	GCTNAGC	1 cut(s)	737
Bsp19I	CCATGG	1 cut(s)	533
BspACI	CCGC	2 cut(s)	438, 734
BspCNI	CTCAG	2 cut(s)	316, 388
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	184, 597
BspPI	GGATC	2 cut(s)	177, 190
BspT107I	GGYRCC	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	719
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	3 cut(s)	611, 831, 851
BssECI	CCNNGG	4 cut(s)	275, 380, 533, 813
BssMI	GATC	3 cut(s)	112, 182, 706
BssT1I	CCWWGG	2 cut(s)	275, 533
Bst2UI	CCWGG	5 cut(s)	180, 453, 459, 471, 814
Bst4CI	ACNGT	3 cut(s)	62, 192, 487
Bst6I	CTCTTC	1 cut(s)	522
BstAUI	TGTACA	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	330, 436
BstDEI	CTNAG	3 cut(s)	324, 396, 737
BstDSI	CCRYGG	2 cut(s)	380, 533
BstF5I	GGATG	4 cut(s)	31, 407, 573, 702
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	3 cut(s)	115, 185, 709
BstMAI	GTCTC	4 cut(s)	73, 222, 719, 774
BstMBI	GATC	3 cut(s)	112, 182, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 356
BstNI	CCWGG	5 cut(s)	180, 453, 459, 471, 814
BstSCI	CCNGG	5 cut(s)	178, 451, 457, 469, 812
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	5 cut(s)	57, 246, 696, 742, 799
BstX2I	RGATCY	2 cut(s)	182, 706
BstYI	RGATCY	2 cut(s)	182, 706
BsuI	GTATCC	1 cut(s)	286
BtgI	CCRYGG	2 cut(s)	380, 533
BtsCI	GGATG	4 cut(s)	31, 407, 573, 702
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	3 cut(s)	264, 492, 844
Cac8I	GCNNGC	2 cut(s)	330, 436
Cfr13I	GGNCC	1 cut(s)	455
CseI	GACGC	3 cut(s)	147, 149, 365
Csp6I	GTAC	4 cut(s)	29, 56, 596, 748
CspCI	CAANNNNNGTGG	2 cut(s)	362, 397
CviAII	CATG	4 cut(s)	6, 297, 534, 796
CviQI	GTAC	4 cut(s)	29, 56, 596, 748
DdeI	CTNAG	3 cut(s)	324, 396, 737
DpnI	GATC	3 cut(s)	114, 184, 708
DpnII	GATC	3 cut(s)	112, 182, 706
DraIII	CACNNNGTG	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	2 cut(s)	275, 533
Eco31I	GGTCTC	1 cut(s)	719
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	5
EcoRI	GAATTC	2 cut(s)	462, 571
EcoRII	CCWGG	5 cut(s)	178, 451, 457, 469, 812
EcoT14I	CCWWGG	2 cut(s)	275, 533
ErhI	CCWWGG	2 cut(s)	275, 533
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	4 cut(s)	9, 300, 537, 799
FaiI	YATR	8 cut(s)	7, 153, 188, 271, 298, 535, 797, 822
FaqI	GGGAC	2 cut(s)	454, 599
FatI	CATG	4 cut(s)	5, 296, 533, 795
FauI	CCCGC	1 cut(s)	431
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	2 cut(s)	136, 194
Fnu4HI	GCNGC	6 cut(s)	46, 235, 685, 731, 734, 788
FokI	GGATG	4 cut(s)	38, 394, 580, 709
Fsp4HI	GCNGC	6 cut(s)	46, 235, 685, 731, 734, 788
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	6 cut(s)	46, 235, 685, 731, 734, 788
GsaI	CCCAGC	2 cut(s)	150, 567
GsuI	CTGGAG	3 cut(s)	162, 453, 782
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	3 cut(s)	147, 149, 365
Hin1II	CATG	4 cut(s)	9, 300, 537, 799
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	2 cut(s)	497, 824
HpaII	CCGG	1 cut(s)	411
Hpy166II	GTNNAC	3 cut(s)	58, 137, 195
Hpy188I	TCNGA	5 cut(s)	255, 325, 397, 645, 806
Hpy188III	TCNNGA	4 cut(s)	23, 104, 543, 704
Hpy8I	GTNNAC	3 cut(s)	58, 137, 195
Hpy99I	CGWCG	1 cut(s)	165
HpyCH4III	ACNGT	3 cut(s)	62, 192, 487
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	269, 626, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 356
HpyF3I	CTNAG	3 cut(s)	324, 396, 737
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	4 cut(s)	9, 300, 537, 799
KpnI	GGTACC	1 cut(s)	599
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	112, 182, 706
LmnI	GCTCC	1 cut(s)	763
Lsp1109I	GCAGC	5 cut(s)	57, 246, 696, 742, 799
LweI	GCATC	2 cut(s)	687, 831
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	3 cut(s)	481, 490, 849
MalI	GATC	3 cut(s)	114, 184, 708
MboI	GATC	3 cut(s)	112, 182, 706
MboII	GAAGA	2 cut(s)	204, 509
MflI	RGATCY	2 cut(s)	182, 706
MhlI	GDGCHC	2 cut(s)	334, 511
MluCI	AATT	4 cut(s)	107, 240, 462, 571
MluI	ACGCGT	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	491, 818
MmeI	TCCRAC	1 cut(s)	668
MnlI	CCTC	7 cut(s)	186, 282, 331, 477, 627, 640, 777
MseI	TTAA	2 cut(s)	339, 856
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	5 cut(s)	180, 453, 459, 471, 814
MvaI	CCWGG	5 cut(s)	180, 453, 459, 471, 814
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	157, 356
NcoI	CCATGG	1 cut(s)	533
NdeII	GATC	3 cut(s)	112, 182, 706
NlaIII	CATG	4 cut(s)	9, 300, 537, 799
NlaIV	GGNNCC	2 cut(s)	184, 597
NmuCI	GTSAC	3 cut(s)	481, 490, 849
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PflMI	CCANNNNNTGG	1 cut(s)	654
PfoI	TCCNGGA	3 cut(s)	178, 457, 469
PkrI	GCNGC	6 cut(s)	47, 236, 686, 732, 735, 789
PleI	GAGTC	2 cut(s)	491, 818
PpsI	GAGTC	2 cut(s)	491, 818
Psp6I	CCWGG	5 cut(s)	178, 451, 457, 469, 812
PspFI	CCCAGC	2 cut(s)	146, 563
PspGI	CCWGG	5 cut(s)	178, 451, 457, 469, 812
PspN4I	GGNNCC	2 cut(s)	184, 597
PspPI	GGNCC	1 cut(s)	455
PsuI	RGATCY	2 cut(s)	182, 706
RsaI	GTAC	4 cut(s)	30, 57, 597, 749
RsaNI	GTAC	4 cut(s)	29, 56, 596, 748
SaqAI	TTAA	2 cut(s)	339, 856
SatI	GCNGC	6 cut(s)	46, 235, 685, 731, 734, 788
Sau3AI	GATC	3 cut(s)	112, 182, 706
Sau96I	GGNCC	1 cut(s)	455
ScaI	AGTACT	1 cut(s)	749
SchI	GAGTC	2 cut(s)	491, 818
ScrFI	CCNGG	5 cut(s)	180, 453, 459, 471, 814
SduI	GDGCHC	2 cut(s)	334, 511
SfaNI	GCATC	2 cut(s)	687, 831
SinI	GGWCC	1 cut(s)	455
SmlI	CTYRAG	2 cut(s)	499, 588
SmoI	CTYRAG	2 cut(s)	499, 588
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	4 cut(s)	107, 240, 462, 571
SsiI	CCGC	2 cut(s)	438, 734
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	5 cut(s)	178, 451, 457, 469, 812
StyI	CCWWGG	2 cut(s)	275, 533
TaaI	ACNGT	3 cut(s)	62, 192, 487
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	544
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	4 cut(s)	107, 240, 462, 571
TatI	WGTACW	3 cut(s)	28, 55, 747
TauI	GCSGC	1 cut(s)	736
Tru1I	TTAA	2 cut(s)	339, 856
Tru9I	TTAA	2 cut(s)	339, 856
TscAI	CASTG	3 cut(s)	271, 499, 851
TseFI	GTSAC	3 cut(s)	481, 490, 849
TseI	GCWGC	5 cut(s)	45, 234, 684, 730, 787
Tsp45I	GTSAC	3 cut(s)	481, 490, 849
TspDTI	ATGAA	4 cut(s)	83, 584, 596, 687
TspRI	CASTG	3 cut(s)	271, 499, 851
Van91I	CCANNNNNTGG	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	3 cut(s)	107, 462, 571
XmiI	GTMKAC	2 cut(s)	136, 194
XspI	CTAG	1 cut(s)	444
ZrmI	AGTACT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.