pycom12g05320

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
5183850 .. 5186156
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g05320.1

Sequence Viewer

Length: 1140 bp
ATGGATATGGGCTCGAGCTCTATGACCGAGTCAGGGAGCTCTTCCTCCTCTTCGCCGCCCAACTCCTCCGCTGAGTCACTCAACGGCTTGAAATTCGGCCGGAAAATCTACTTTGAGGATGGGGGTTGTGGAGCTCTGCACAAATCATCATCAGGGTCTGCTGCTGGGTCTTCCTCCGCCGGGGCTACGCCGCCCAAGAAGCAAAGGGGCGGCGGAAATTTGGGTCAGCCGCCGCGGTGTCAGGTGGAGGGCTGCGAGGTAGATCTGAGTGGTGCCAAACCTTACTATTCCAGGCACAAAGTCTGTGGCTTGCACTCTAAAACCCCCACTGTTATTGTTGCTGGTCTTGAACAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATTTACTACCTGAATTTGACCAAGGAAAACGTAGTTGTCGTAGACGGTTGGCTGGGCATAATGAGCGTCGTAGAAAGCCACAACCAGGATCCATACTGTCTGCGCGTGGCAGACTTTCGTCGTCTCTCTACGAAAACAGCAACAGAGTTGGAAGCTTTCTGATGGACTTCACTGCATACCCAAGGCTTTCTGGGAGGGATGAATGGACGACAACGAGAACTTCTGAGCGAGCACCTGTTAATCAAAATGCCAATGACGCAGGGAAGTTTCTACAACAGCCGTGGCAGAGCAACTCTGAGATTTCTACATCCGGCTTTTACCTACAAGGTTCAGCAGGCGGGACTAGTTATCCTGGTCCTGGAATTCCTCCAGGAGAATGCGTCACAGTAGTCACTGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAGCCATGGGGCTCTCGAAACCGAGTATCGGGTGCTGGGATGAATTCCTTGATGAACACTCAAGGGGTACCTGTGGCTCAAACAGTCCCTCATTCTGCAACCTCCAATCACTTTCCGACCACTTCGTGGGGTTTCAAGGGAAATGAAAATGGTAGCAGCTCACACGGGATGCTTCCGGATCTGGGTCGCGGTCAGATCTCGCAGCCGCTTAGCAGTCAGTACTCTGGTGTGCTGGAGCTGTCTCAACAGGGTAGGAGGCAGCAACACATGGAACTCGGACACACCAGGGGCTATGACTCCACCAGTCAGCAGATGCACTGGTCGCTTTAA

Protein Analysis

380

Amino Acids

40.59

Weight (kDa)

9.42

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 80 - 153 1.9e-33 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 366
Acc65I GGTACC 1 cut(s) 877
AccB1I GGYRCC 2 cut(s) 272, 877
AccB7I CCANNNNNTGG 1 cut(s) 936
AccI GTMKAC 1 cut(s) 424
AccII CGCG 3 cut(s) 235, 487, 999
AccIII TCCGGA 1 cut(s) 985
AclWI GGATC 3 cut(s) 465, 478, 996
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 5 cut(s) 92, 217, 395, 744, 853
AdeI CACNNNGTG 1 cut(s) 936
AfaI GTAC 2 cut(s) 879, 1031
AfiI CCNNNNNNNGG 7 cut(s) 33, 180, 467, 740, 838, 936, 992
AgsI TTSAA 3 cut(s) 91, 350, 946
AhlI ACTAGT 1 cut(s) 725
AjnI CCWGG 6 cut(s) 290, 466, 733, 739, 751, 1094
AluBI AGCT 7 cut(s) 18, 39, 134, 537, 786, 969, 1048
AluI AGCT 7 cut(s) 18, 39, 134, 537, 786, 969, 1048
Alw21I GWGCWC 5 cut(s) 20, 41, 136, 616, 793
Alw26I GTCTC 2 cut(s) 510, 1056
AlwI GGATC 3 cut(s) 465, 478, 996
AlwNI CAGNNNCTG 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 985
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 5 cut(s) 161, 252, 966, 1012, 1069
ApoI RAATTY 5 cut(s) 92, 217, 395, 744, 853
Asp718I GGTACC 1 cut(s) 877
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 1 cut(s) 737
AsuC2I CCSGG 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 1 cut(s) 737
BamHI GGATCC 1 cut(s) 470
BanI GGYRCC 2 cut(s) 272, 877
BanII GRGCYC 5 cut(s) 14, 20, 41, 136, 824
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 5 cut(s) 20, 41, 136, 616, 793
BbvI GCAGC 5 cut(s) 148, 239, 978, 1024, 1081
BccI CCATC 2 cut(s) 113, 538
BceAI ACGGC 2 cut(s) 100, 646
BciT130I CCWGG 6 cut(s) 292, 468, 735, 741, 753, 1096
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 510, 1056
BcuI ACTAGT 1 cut(s) 725
BfaI CTAG 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 366
BglII AGATCT 2 cut(s) 262, 1005
BlpI GCTNAGC 1 cut(s) 1019
BmcAI AGTACT 1 cut(s) 1031
Bme1390I CCNGG 7 cut(s) 181, 292, 468, 735, 741, 753, 1096
Bme18I GGWCC 1 cut(s) 737
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 3 cut(s) 274, 472, 879
BmrFI CCNGG 7 cut(s) 181, 292, 468, 735, 741, 753, 1096
BmsI GCATC 2 cut(s) 969, 1113
BoxI GACNNNNGTC 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 2 cut(s) 735, 1064
Bpu1102I GCTNAGC 1 cut(s) 1019
BpuEI CTTGAG 2 cut(s) 766, 855
BpuMI CCSGG 1 cut(s) 181
BsaJI CCNNGG 7 cut(s) 180, 233, 403, 563, 662, 815, 1095
BsaWI WCCGGW 1 cut(s) 985
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 7 cut(s) 33, 180, 467, 740, 838, 936, 992
Bse1I ACTGG 2 cut(s) 1113, 1133
BseAI TCCGGA 1 cut(s) 985
BseBI CCWGG 6 cut(s) 292, 468, 735, 741, 753, 1096
BseDI CCNNGG 7 cut(s) 180, 233, 403, 563, 662, 815, 1095
BseGI GGATG 5 cut(s) 124, 586, 689, 855, 984
BseLI CCNNNNNNNGG 7 cut(s) 33, 180, 467, 740, 838, 936, 992
BseMII CTCAG 4 cut(s) 63, 257, 597, 669
BseNI ACTGG 2 cut(s) 1113, 1133
BseRI GAGGAG 2 cut(s) 37, 55
BseX3I CGGCCG 1 cut(s) 97
BseXI GCAGC 5 cut(s) 148, 239, 978, 1024, 1081
BseYI CCCAGC 3 cut(s) 164, 434, 845
BsgI GTGCAG 1 cut(s) 122
Bsh1236I CGCG 3 cut(s) 235, 487, 999
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 2 cut(s) 272, 877
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 5 cut(s) 20, 41, 136, 616, 793
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 4 cut(s) 100, 180, 693, 986
BslFI GGGAC 2 cut(s) 736, 881
BslI CCNNNNNNNGG 7 cut(s) 33, 180, 467, 740, 838, 936, 992
BsmAI GTCTC 2 cut(s) 510, 1056
BsmBI CGTCTC 1 cut(s) 510
BsmFI GGGAC 2 cut(s) 736, 881
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 7 cut(s) 14, 20, 41, 136, 616, 793, 824
Bsp13I TCCGGA 1 cut(s) 985
Bsp143I GATC 4 cut(s) 262, 470, 988, 1005
Bsp1720I GCTNAGC 1 cut(s) 1019
Bsp19I CCATGG 1 cut(s) 815
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 4 cut(s) 64, 258, 598, 670
BspEI TCCGGA 1 cut(s) 985
BspFNI CGCG 3 cut(s) 235, 487, 999
BspLI GGNNCC 3 cut(s) 274, 472, 879
BspMI ACCTGC 1 cut(s) 366
BspPI GGATC 3 cut(s) 465, 478, 996
BspQI GCTCTTC 1 cut(s) 46
BspT107I GGYRCC 2 cut(s) 272, 877
BsrI ACTGG 2 cut(s) 1113, 1133
BssECI CCNNGG 7 cut(s) 180, 233, 403, 563, 662, 815, 1095
BssMI GATC 4 cut(s) 262, 470, 988, 1005
BssT1I CCWWGG 3 cut(s) 403, 563, 815
Bst2UI CCWGG 6 cut(s) 292, 468, 735, 741, 753, 1096
Bst4CI ACNGT 6 cut(s) 331, 369, 429, 480, 769, 895
Bst6I CTCTTC 3 cut(s) 46, 55, 804
BstC8I GCNNGC 3 cut(s) 311, 612, 718
BstDEI CTNAG 5 cut(s) 72, 266, 606, 678, 1019
BstDSI CCRYGG 3 cut(s) 233, 662, 815
BstF5I GGATG 5 cut(s) 124, 586, 689, 855, 984
BstFNI CGCG 3 cut(s) 235, 487, 999
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 4 cut(s) 265, 473, 991, 1008
BstMAI GTCTC 2 cut(s) 510, 1056
BstMBI GATC 4 cut(s) 262, 470, 988, 1005
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 4 cut(s) 199, 445, 638, 1132
BstNI CCWGG 6 cut(s) 292, 468, 735, 741, 753, 1096
BstPAI GACNNNNGTC 1 cut(s) 499
BstSCI CCNGG 7 cut(s) 179, 290, 466, 733, 739, 751, 1094
BstUI CGCG 3 cut(s) 235, 487, 999
BstV1I GCAGC 5 cut(s) 148, 239, 978, 1024, 1081
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 4 cut(s) 262, 470, 988, 1005
BstYI RGATCY 4 cut(s) 262, 470, 988, 1005
BstZI CGGCCG 1 cut(s) 97
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 3 cut(s) 233, 662, 815
BtsCI GGATG 5 cut(s) 124, 586, 689, 855, 984
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 5 cut(s) 327, 374, 552, 774, 1126
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 3 cut(s) 311, 612, 718
CaiI CAGNNNCTG 1 cut(s) 158
CfoI GCGC 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 737
Cfr42I CCGCGG 1 cut(s) 236
CseI GACGC 3 cut(s) 437, 647, 751
Csp6I GTAC 2 cut(s) 878, 1030
CspCI CAANNNNNGTGG 6 cut(s) 286, 316, 321, 351, 644, 679
CviAII CATG 2 cut(s) 816, 1078
CviQI GTAC 2 cut(s) 878, 1030
DdeI CTNAG 5 cut(s) 72, 266, 606, 678, 1019
DpnI GATC 4 cut(s) 264, 472, 990, 1007
DpnII GATC 4 cut(s) 262, 470, 988, 1005
DraIII CACNNNGTG 1 cut(s) 936
EaeI YGGCCR 1 cut(s) 97
EagI CGGCCG 1 cut(s) 97
Eam1104I CTCTTC 3 cut(s) 46, 55, 804
EarI CTCTTC 3 cut(s) 46, 55, 804
EciI GGCGGA 2 cut(s) 166, 228
Ecl136II GAGCTC 3 cut(s) 18, 39, 134
EclXI CGGCCG 1 cut(s) 97
Eco130I CCWWGG 3 cut(s) 403, 563, 815
Eco24I GRGCYC 5 cut(s) 14, 20, 41, 136, 824
Eco47I GGWCC 1 cut(s) 737
Eco52I CGGCCG 1 cut(s) 97
Eco53kI GAGCTC 3 cut(s) 18, 39, 134
Eco88I CYCGRG 1 cut(s) 13
EcoICRI GAGCTC 3 cut(s) 18, 39, 134
EcoRI GAATTC 2 cut(s) 744, 853
EcoRII CCWGG 6 cut(s) 290, 466, 733, 739, 751, 1094
EcoT14I CCWWGG 3 cut(s) 403, 563, 815
EcoT38I GRGCYC 5 cut(s) 14, 20, 41, 136, 824
ErhI CCWWGG 3 cut(s) 403, 563, 815
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 2 cut(s) 819, 1081
FaiI YATR 8 cut(s) 8, 23, 441, 476, 559, 817, 1079, 1104
FaqI GGGAC 2 cut(s) 736, 881
FatI CATG 2 cut(s) 815, 1077
FauI CCCGC 1 cut(s) 713
FblI GTMKAC 1 cut(s) 424
FokI GGATG 5 cut(s) 131, 593, 676, 862, 991
FriOI GRGCYC 5 cut(s) 14, 20, 41, 136, 824
FspBI CTAG 1 cut(s) 726
GlaI GCGC 1 cut(s) 486
GsaI CCCAGC 3 cut(s) 168, 438, 849
GsuI CTGGAG 2 cut(s) 735, 1064
HaeIII GGCC 1 cut(s) 99
HapII CCGG 4 cut(s) 100, 180, 693, 986
HgaI GACGC 3 cut(s) 437, 647, 751
HhaI GCGC 1 cut(s) 487
Hin1II CATG 2 cut(s) 819, 1081
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HindIII AAGCTT 1 cut(s) 535
HinfI GANTC 4 cut(s) 29, 74, 779, 1106
HpaII CCGG 4 cut(s) 100, 180, 693, 986
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 7 cut(s) 267, 543, 607, 679, 927, 1005, 1088
Hpy188III TCNNGA 3 cut(s) 347, 825, 986
Hpy8I GTNNAC 1 cut(s) 425
Hpy99I CGWCG 2 cut(s) 453, 505
HpyCH4III ACNGT 6 cut(s) 331, 369, 429, 480, 769, 895
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 5 cut(s) 139, 313, 557, 908, 1126
HpyF10VI GCNNNNNNNGC 4 cut(s) 199, 445, 638, 1132
HpyF3I CTNAG 5 cut(s) 72, 266, 606, 678, 1019
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 2 cut(s) 819, 1081
HspAI GCGC 1 cut(s) 485
Kpn2I TCCGGA 1 cut(s) 985
KpnI GGTACC 1 cut(s) 881
KspI CCGCGG 1 cut(s) 236
Kzo9I GATC 4 cut(s) 262, 470, 988, 1005
LguI GCTCTTC 1 cut(s) 46
LmnI GCTCC 3 cut(s) 36, 131, 1045
Lsp1109I GCAGC 5 cut(s) 148, 239, 978, 1024, 1081
LweI GCATC 2 cut(s) 969, 1113
MaeI CTAG 1 cut(s) 726
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 3 cut(s) 75, 763, 772
MalI GATC 4 cut(s) 264, 472, 990, 1007
MboI GATC 4 cut(s) 262, 470, 988, 1005
MboII GAAGA 4 cut(s) 33, 42, 162, 791
MflI RGATCY 4 cut(s) 262, 470, 988, 1005
MhlI GDGCHC 7 cut(s) 14, 20, 41, 136, 616, 793, 824
MluCI AATT 5 cut(s) 92, 217, 395, 744, 853
MlyI GAGTC 4 cut(s) 38, 83, 773, 1100
MmeI TCCRAC 2 cut(s) 511, 950
MroI TCCGGA 1 cut(s) 985
MseI TTAA 2 cut(s) 621, 1138
MspA1I CMGCKG 2 cut(s) 71, 235
MspI CCGG 4 cut(s) 100, 180, 693, 986
MspR9I CCNGG 7 cut(s) 181, 292, 468, 735, 741, 753, 1096
Mva1269I GAATGC 1 cut(s) 764
MvaI CCWGG 6 cut(s) 292, 468, 735, 741, 753, 1096
MvnI CGCG 3 cut(s) 235, 487, 999
MwoI GCNNNNNNNGC 4 cut(s) 199, 445, 638, 1132
NciI CCSGG 1 cut(s) 181
NcoI CCATGG 1 cut(s) 815
NdeII GATC 4 cut(s) 262, 470, 988, 1005
NlaIII CATG 2 cut(s) 819, 1081
NlaIV GGNNCC 3 cut(s) 274, 472, 879
NmuCI GTSAC 3 cut(s) 75, 763, 772
PaeR7I CTCGAG 1 cut(s) 13
PciSI GCTCTTC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PctI GAATGC 1 cut(s) 764
PflFI GACNNNGTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 936
PfoI TCCNGGA 2 cut(s) 739, 751
PleI GAGTC 4 cut(s) 37, 82, 773, 1100
PpsI GAGTC 4 cut(s) 37, 82, 773, 1100
PshAI GACNNNNGTC 1 cut(s) 499
Psp124BI GAGCTC 3 cut(s) 20, 41, 136
Psp6I CCWGG 6 cut(s) 290, 466, 733, 739, 751, 1094
PspFI CCCAGC 3 cut(s) 164, 434, 845
PspGI CCWGG 6 cut(s) 290, 466, 733, 739, 751, 1094
PspN4I GGNNCC 3 cut(s) 274, 472, 879
PspPI GGNCC 1 cut(s) 737
PspXI VCTCGAGB 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 4 cut(s) 262, 470, 988, 1005
PsyI GACNNNGTC 1 cut(s) 28
RsaI GTAC 2 cut(s) 879, 1031
RsaNI GTAC 2 cut(s) 878, 1030
SacI GAGCTC 3 cut(s) 20, 41, 136
SacII CCGCGG 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 621, 1138
Sau3AI GATC 4 cut(s) 262, 470, 988, 1005
Sau96I GGNCC 1 cut(s) 737
ScaI AGTACT 1 cut(s) 1031
SchI GAGTC 4 cut(s) 38, 83, 773, 1100
ScrFI CCNGG 7 cut(s) 181, 292, 468, 735, 741, 753, 1096
SduI GDGCHC 7 cut(s) 14, 20, 41, 136, 616, 793, 824
SfaNI GCATC 2 cut(s) 969, 1113
Sfr274I CTCGAG 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 236
SgrBI CCGCGG 1 cut(s) 236
SinI GGWCC 1 cut(s) 737
SlaI CTCGAG 1 cut(s) 13
SmlI CTYRAG 3 cut(s) 13, 781, 870
SmoI CTYRAG 3 cut(s) 13, 781, 870
SpeI ACTAGT 1 cut(s) 725
Sse9I AATT 5 cut(s) 92, 217, 395, 744, 853
SspMI CTAG 1 cut(s) 726
SstI GAGCTC 3 cut(s) 20, 41, 136
StyD4I CCNGG 7 cut(s) 179, 290, 466, 733, 739, 751, 1094
StyI CCWWGG 3 cut(s) 403, 563, 815
TaaI ACNGT 6 cut(s) 331, 369, 429, 480, 769, 895
TaiI ACGT 1 cut(s) 415
TaqI TCGA 2 cut(s) 14, 826
TaqII GACCGA 1 cut(s) 41
TasI AATT 5 cut(s) 92, 217, 395, 744, 853
TatI WGTACW 1 cut(s) 1029
TauI GCSGC 6 cut(s) 58, 193, 213, 232, 235, 1018
Tru1I TTAA 2 cut(s) 621, 1138
Tru9I TTAA 2 cut(s) 621, 1138
TscAI CASTG 5 cut(s) 334, 374, 559, 781, 1133
TseFI GTSAC 3 cut(s) 75, 763, 772
TseI GCWGC 5 cut(s) 161, 252, 966, 1012, 1069
Tsp45I GTSAC 3 cut(s) 75, 763, 772
TspDTI ATGAA 5 cut(s) 371, 597, 866, 878, 969
TspRI CASTG 5 cut(s) 334, 374, 559, 781, 1133
Tth111I GACNNNGTC 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 936
VpaK11BI GGWCC 1 cut(s) 737
XapI RAATTY 5 cut(s) 92, 217, 395, 744, 853
XhoI CTCGAG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 424
XspI CTAG 1 cut(s) 726
ZrmI AGTACT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.