Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002771

Physical Location & Seq

Genomic Coordinates Forward (+)

17643334 .. 17645533

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGGATCCTCCGGCGAATCCTTTTGCATCTCGAGAGCAAGATACAGTAACTATTTTAAGAAACCTGATTAAGCAAGCTACTTTGGAGGAAGAAGTCTCTGAAGCTTCAGAGACACATTCTGTTCCGAACAAAATCAGAATTTTAGAGTCAGTGTCGGACGAAATGAGGAAATCGCAGGAGAACGGTAGTGATCAGAAACAGTTGAGTGAGGAAGACGAGATTGATATTCTGGATTCAAAAGCCATGAGCTTTTCTTTTAGTTGTCACGGTGGTGGGCCAAAGCGGAAGAAATGTAACGATAAGAAACGTAAGCAGCAAGAAGAGAAGTCTAAGAAGAAGCTCAAGGTACTTGTTGAAACATTAAAGCTTGTACCTTTCAAGCCATTAAAAACCCTAGATTTTGCTTGTTATGAGAGTCTCTTAAAGACTCTCGGATTGTGGGATTTTGTGCATTTGGAATTTGATCAGGATATGGATTATGATCTTGTGGCTCAACTTATAGCTTCCTATAGTGCTGGAGGTAAGTGCAGCTATATAAACGGGTCTAGGATTAAACTTAGTCGTGCGGATTTGGCTCGATCTTTGAAGTTGCCTAATAAGAAAGAACGTGTTGTCATTCTTGATGAGGATAAGGAATTTCTGGAATCAGATGAATCAATCAGTGTTGTTGAAGATGTTATCTCTAATTGGATGCTACTGCATTGTGATGATGCGTGGATGATGCCAGATGAAGTGGTGGAATGGATGAAAGGTATAAAGAAAAAGCAATTGGATAAGCTGGACTGGGCTGGACTGATGTGGTTTATGGTTGAGAAAGAGTTGAAAGCGGAGCCTCCACTCGGGGATTGTTTCTATGCGTCGCATTTGCAGATGGTCATTAGATCACAGAAAATAGATCTGTTTAAGGAGAGGGATTTGAAGGTAAAGGATGATATTGCTGCTTTGAATCTAGGAATGGATGATGGAGCCACTGACTCAAAGAAAGAAAACTGTGTGGAGGAAAGTACGACCAAACTGAATCTTGGGCAAGTGATTGTGTCCGAAATGGCTGCTACGATGGAGCTTTATCATGAGGAACAAGCAATTGATCTTGAGGAAAACAAGGAACAACCAATGGATCTTAAGGAAGCCAAGGAAGAAGGAGATGAAATGGAATGGAGACAGCCATATGAAAAGAACGGAACAAGACATAGGAAAGTGGGAGAGAATGAGATACTTGAAGATGAAATTGAGAAAGATGGAGAAAAGCAAGAAGGAGGGTTTTTATTGTTTCGGAACGGTAAAACACTACACCAGGAAAATCTGATGTTGGGAGATACATCTACATTAGGTTATAATTCTGGGCTACAGGTTCATGGCAGTTCTACTTGTGATTTCCTGGCACCTAGAGCTGTCATGCATATGGTTCCAGGTCGTTCTCATTTTGGGAATGATAACAAGAGAGAGTTTGGTCACGAGAATGATATTTCATACCATTTTGATAACCCTGCTAGTACTAAGAGGTTGAAGACACCATCTTGGGATGACAAGCCAGTTCCTTTTGACATTTGCATGGAGCAGATTAAGCACTTGGCAGATAAGGCTAAGTTATCATATGTCGAGAAAGACCAAGCTTGTGGAGAATCGAACATGAGGGAACAAATGTTGCAAAATGAACTGCAAAGGAGGGAAGACATAATTCAGCAATTGCACAAAGAAAGTTATGAAGAGCTACACAAGAAGAACGTAGAGATCTATAAGCTTGAAAATGAACTTCGTATGATGACAAGTGTATTAGCCTGGTACCAGAAAGCTTTAAAAGAATCACAGAAGGCATGTAGAAAGCACAGGAAAGTTTGCCCTTTGCTTGATAAACCGATATACATAGATGTTAAAGGTACTGGAGGTTTAGTATTGAGCACTGCTGAAATCGAGAAGCTAAGATTGAAAGAAGAAAAAGAAGAGGGGATGAGACGAGTTCTAATAGAGAGACAAGTAAAAGAAGTTGGAAGTCTCTGGATTAAAGAGTATGAAGTGAACCTTAAGAAAAAAGTAGAGTTGCTTGACGGGAAGCTGATTGGGTTTCAAAATAAGATGAAGCTCTTGAAAGAAACAATTTCAAGACGCGAATCTATATCTGCAAGATTTGATGCAACATCAAACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

715

Amino Acids

82.43

Weight (kDa)

5.51

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42370 AT3G58110 AT3G58110
fragaria_vesca	FvH4_3g11260 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000
malus_domestica	MD09G1139300.v1.1 MD17G1128800.v1.1
prunus_persica	Prupe.8G044600_v2.0.a1 Prupe.8G044600_v2.0.a1
pyrus_communis	pycom09g05990
rosa_chinensis	RchiOBHm_Chr2g0128861 RchiOBHm_Chr5g0053351
rosa_laevigata	RLG00000019034 RLG00000034768
rosa_multiflora	Rmu_co8379445.1_g000001 Rmu_co8380183.1_g000001 Rmu_sc0001643.1_g000032 Rmu_sc0001966.1_g000005 Rmu_sc0038988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029080 Rroxscaffold_2G00115160
rosa_rugosa	Rorug02G0281900 Rorug02G0282000 Rorug05G0267400
rosa_samantha	Rh2AG334400 Rh2BG342400 Rh2CG321300 Rh2DG359100 Rh5AG339900 Rh5BG350300 Rh5CG376800 Rh5DG364400
rosa_wichuraiana	Rw2G027050 Rw5G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1335
Acc65I	GGTACC	1 cut(s)	1782
AccB1I	GGYRCC	2 cut(s)	1381, 1782
AccII	CGCG	1 cut(s)	2106
AciI	CCGC	3 cut(s)	283, 566, 827
AclWI	GGATC	2 cut(s)	12, 1125
AcsI	RAATTY	3 cut(s)	138, 458, 635
AcuI	CTGAAG	2 cut(s)	90, 120
AfaI	GTAC	6 cut(s)	348, 372, 1006, 1495, 1784, 1879
AfiI	CCNNNNNNNGG	1 cut(s)	839
AflII	CTTAAG	2 cut(s)	1121, 2021
AflIII	ACRYGT	1 cut(s)	607
AjnI	CCWGG	4 cut(s)	1293, 1377, 1408, 1778
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AleI	CACNNNNGTG	1 cut(s)	270
Alw21I	GWGCWC	1 cut(s)	1901
Alw26I	GTCTC	7 cut(s)	100, 104, 422, 1153, 1945, 1963, 1997
AlwI	GGATC	2 cut(s)	12, 1125
Ama87I	CYCGRG	2 cut(s)	30, 839
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	4 cut(s)	313, 528, 938, 1049
ApoI	RAATTY	3 cut(s)	138, 458, 635
Asp718I	GGTACC	1 cut(s)	1782
AspS9I	GGNCC	1 cut(s)	275
AvaI	CYCGRG	2 cut(s)	30, 839
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	1381, 1782
BauI	CACGAG	1 cut(s)	1454
BbsI	GAAGAC	3 cut(s)	219, 1514, 1677
Bbv12I	GWGCWC	1 cut(s)	1901
BbvI	GCAGC	4 cut(s)	325, 540, 925, 1036
BccI	CCATC	5 cut(s)	865, 956, 1051, 1232, 1522
BcgI	CGANNNNNNTGC	2 cut(s)	1031, 1065
BciT130I	CCWGG	4 cut(s)	1295, 1379, 1410, 1780
BclI	TGATCA	2 cut(s)	190, 463
BcoDI	GTCTC	7 cut(s)	100, 104, 422, 1153, 1945, 1963, 1997
BfaI	CTAG	5 cut(s)	395, 546, 950, 1386, 1491
BfmI	CTRYAG	2 cut(s)	508, 1346
BfrI	CTTAAG	2 cut(s)	1121, 2021
BglII	AGATCT	2 cut(s)	895, 1731
BisI	GCNGC	4 cut(s)	314, 529, 939, 1050
BlsI	GCNGC	4 cut(s)	315, 530, 940, 1051
BmcAI	AGTACT	1 cut(s)	1495
Bme1390I	CCNGG	4 cut(s)	1295, 1379, 1410, 1780
BmeT110I	CYCGRG	2 cut(s)	30, 839
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	6 cut(s)	6, 831, 967, 1383, 1407, 1784
BmrFI	CCNGG	4 cut(s)	1295, 1379, 1410, 1780
BmrI	ACTGGG	1 cut(s)	793
BmsI	GCATC	5 cut(s)	35, 681, 700, 711, 2119
BmuI	ACTGGG	1 cut(s)	793
BpiI	GAAGAC	3 cut(s)	219, 1514, 1677
BpmI	CTGGAG	2 cut(s)	537, 1902
BpuEI	CTTGAG	2 cut(s)	326, 1112
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	1131
BsaXI	ACNNNNNCTCC	2 cut(s)	1875, 1905
Bsc4I	CCNNNNNNNGG	1 cut(s)	839
Bse1I	ACTGG	3 cut(s)	788, 1532, 1885
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	4 cut(s)	1295, 1379, 1410, 1780
BseDI	CCNNGG	1 cut(s)	1131
BseGI	GGATG	7 cut(s)	696, 723, 750, 934, 964, 1528, 1953
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	839
BseNI	ACTGG	3 cut(s)	788, 1532, 1885
BseXI	GCAGC	4 cut(s)	325, 540, 925, 1036
BsgI	GTGCAG	1 cut(s)	547
Bsh1236I	CGCG	1 cut(s)	2106
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	2 cut(s)	1381, 1782
BsiHKAI	GWGCWC	1 cut(s)	1901
BsiHKCI	CYCGRG	2 cut(s)	30, 839
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	839
BsmAI	GTCTC	7 cut(s)	100, 104, 422, 1153, 1945, 1963, 1997
BsmBI	CGTCTC	1 cut(s)	1945
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	2 cut(s)	30, 839
Bsp1286I	GDGCHC	1 cut(s)	1901
BspACI	CCGC	3 cut(s)	283, 566, 827
BspANI	GGCC	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	2106
BspHI	TCATGA	1 cut(s)	1069
BspLI	GGNNCC	6 cut(s)	6, 831, 967, 1383, 1407, 1784
BspPI	GGATC	2 cut(s)	12, 1125
BspQI	GCTCTTC	1 cut(s)	1701
BspT107I	GGYRCC	2 cut(s)	1381, 1782
BspTI	CTTAAG	2 cut(s)	1121, 2021
BsrI	ACTGG	3 cut(s)	788, 1532, 1885
BssECI	CCNNGG	1 cut(s)	1131
BssSI	CACGAG	1 cut(s)	1454
BssT1I	CCWWGG	1 cut(s)	1131
Bst2BI	CACGAG	1 cut(s)	1454
Bst2UI	CCWGG	4 cut(s)	1295, 1379, 1410, 1780
Bst4CI	ACNGT	6 cut(s)	46, 185, 201, 269, 992, 1280
Bst6I	CTCTTC	3 cut(s)	315, 1701, 1935
BstAFI	CTTAAG	2 cut(s)	1121, 2021
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	5 cut(s)	330, 557, 1497, 1584, 1919
BstF5I	GGATG	7 cut(s)	696, 723, 750, 934, 964, 1528, 1953
BstFNI	CGCG	1 cut(s)	2106
BstMAI	GTCTC	7 cut(s)	100, 104, 422, 1153, 1945, 1963, 1997
BstMWI	GCNNNNNNNGC	4 cut(s)	572, 1388, 1564, 1580
BstNI	CCWGG	4 cut(s)	1295, 1379, 1410, 1780
BstNSI	RCATGY	1 cut(s)	1818
BstSCI	CCNGG	4 cut(s)	1293, 1377, 1408, 1778
BstSFI	CTRYAG	2 cut(s)	508, 1346
BstUI	CGCG	1 cut(s)	2106
BstV1I	GCAGC	4 cut(s)	325, 540, 925, 1036
BstV2I	GAAGAC	3 cut(s)	219, 1514, 1677
BstX2I	RGATCY	4 cut(s)	4, 895, 1117, 1731
BstXI	CCANNNNNNTGG	1 cut(s)	1616
BstYI	RGATCY	4 cut(s)	4, 895, 1117, 1731
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	7 cut(s)	696, 723, 750, 934, 964, 1528, 1953
BtsI	GCAGTG	1 cut(s)	1899
BtsIMutI	CAGTG	4 cut(s)	156, 667, 969, 1899
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	1069
Cfr13I	GGNCC	1 cut(s)	275
CseI	GACGC	2 cut(s)	846, 2112
Csp6I	GTAC	6 cut(s)	347, 371, 1005, 1494, 1783, 1878
CviAII	CATG	7 cut(s)	244, 1070, 1355, 1396, 1552, 1630, 1815
CviQI	GTAC	6 cut(s)	347, 371, 1005, 1494, 1783, 1878
DdeI	CTNAG	5 cut(s)	330, 557, 1497, 1584, 1919
DraI	TTTAAA	1 cut(s)	1797
Eam1104I	CTCTTC	3 cut(s)	315, 1701, 1935
EarI	CTCTTC	3 cut(s)	315, 1701, 1935
Eco130I	CCWWGG	1 cut(s)	1131
Eco57I	CTGAAG	2 cut(s)	90, 120
Eco88I	CYCGRG	2 cut(s)	30, 839
EcoRII	CCWGG	4 cut(s)	1293, 1377, 1408, 1778
EcoT14I	CCWWGG	1 cut(s)	1131
EcoT22I	ATGCAT	1 cut(s)	1401
ErhI	CCWWGG	1 cut(s)	1131
Esp3I	CGTCTC	1 cut(s)	1945
FaeI	CATG	7 cut(s)	247, 1073, 1358, 1399, 1555, 1633, 1818
FalI	AAGNNNNNCTT	2 cut(s)	2004, 2036
FatI	CATG	7 cut(s)	243, 1069, 1354, 1395, 1551, 1629, 1814
FauNDI	CATATG	3 cut(s)	1168, 1401, 1594
FbaI	TGATCA	2 cut(s)	190, 463
Fnu4HI	GCNGC	4 cut(s)	314, 529, 939, 1050
FokI	GGATG	7 cut(s)	703, 730, 757, 941, 971, 1535, 1960
Fsp4HI	GCNGC	4 cut(s)	314, 529, 939, 1050
FspBI	CTAG	5 cut(s)	395, 546, 950, 1386, 1491
GluI	GCNGC	4 cut(s)	314, 529, 939, 1050
GsuI	CTGGAG	2 cut(s)	537, 1902
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	2 cut(s)	846, 2112
Hin1II	CATG	7 cut(s)	247, 1073, 1358, 1399, 1555, 1633, 1818
HindIII	AAGCTT	5 cut(s)	102, 365, 1611, 1739, 1791
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	2017
Hpy8I	GTNNAC	1 cut(s)	2017
Hpy99I	CGWCG	1 cut(s)	862
HpyAV	CCTTC	4 cut(s)	913, 1133, 1247, 1804
HpyCH4III	ACNGT	6 cut(s)	46, 185, 201, 269, 992, 1280
HpyCH4IV	ACGT	3 cut(s)	307, 607, 1725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	572, 1388, 1564, 1580
HpyF3I	CTNAG	5 cut(s)	330, 557, 1497, 1584, 1919
HpySE526I	ACGT	3 cut(s)	307, 607, 1725
Hsp92II	CATG	7 cut(s)	247, 1073, 1358, 1399, 1555, 1633, 1818
KpnI	GGTACC	1 cut(s)	1786
Ksp22I	TGATCA	2 cut(s)	190, 463
LguI	GCTCTTC	1 cut(s)	1701
LmnI	GCTCC	4 cut(s)	829, 965, 1060, 1555
Lsp1109I	GCAGC	4 cut(s)	325, 540, 925, 1036
LweI	GCATC	5 cut(s)	35, 681, 700, 711, 2119
MaeI	CTAG	5 cut(s)	395, 546, 950, 1386, 1491
MaeII	ACGT	3 cut(s)	307, 607, 1725
MaeIII	GTNAC	4 cut(s)	46, 263, 293, 1451
MfeI	CAATTG	3 cut(s)	767, 1083, 1685
MflI	RGATCY	4 cut(s)	4, 895, 1117, 1731
MhlI	GDGCHC	1 cut(s)	1901
MlyI	GAGTC	4 cut(s)	155, 421, 424, 968
MmeI	TCCRAC	2 cut(s)	135, 1966
Mph1103I	ATGCAT	1 cut(s)	1401
MslI	CAYNNNNRTG	5 cut(s)	270, 705, 1400, 1458, 1550
MspCI	CTTAAG	2 cut(s)	1121, 2021
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	4 cut(s)	1295, 1379, 1410, 1780
MunI	CAATTG	3 cut(s)	767, 1083, 1685
MvaI	CCWGG	4 cut(s)	1295, 1379, 1410, 1780
MvnI	CGCG	1 cut(s)	2106
MwoI	GCNNNNNNNGC	4 cut(s)	572, 1388, 1564, 1580
NdeI	CATATG	3 cut(s)	1168, 1401, 1594
NlaIII	CATG	7 cut(s)	247, 1073, 1358, 1399, 1555, 1633, 1818
NlaIV	GGNNCC	6 cut(s)	6, 831, 967, 1383, 1407, 1784
NmuCI	GTSAC	2 cut(s)	263, 1451
NsiI	ATGCAT	1 cut(s)	1401
NspI	RCATGY	1 cut(s)	1818
OliI	CACNNNNGTG	1 cut(s)	270
PaeR7I	CTCGAG	1 cut(s)	30
PagI	TCATGA	1 cut(s)	1069
PciSI	GCTCTTC	1 cut(s)	1701
PfeI	GAWTC	9 cut(s)	16, 233, 644, 653, 946, 1018, 1622, 1802, 2108
PkrI	GCNGC	4 cut(s)	315, 530, 940, 1051
PleI	GAGTC	4 cut(s)	154, 421, 423, 968
PpsI	GAGTC	4 cut(s)	154, 421, 423, 968
PsiI	TTATAA	1 cut(s)	1335
Psp6I	CCWGG	4 cut(s)	1293, 1377, 1408, 1778
PspGI	CCWGG	4 cut(s)	1293, 1377, 1408, 1778
PspN4I	GGNNCC	6 cut(s)	6, 831, 967, 1383, 1407, 1784
PspPI	GGNCC	1 cut(s)	275
PsuI	RGATCY	4 cut(s)	4, 895, 1117, 1731
RsaI	GTAC	6 cut(s)	348, 372, 1006, 1495, 1784, 1879
RsaNI	GTAC	6 cut(s)	347, 371, 1005, 1494, 1783, 1878
RseI	CAYNNNNRTG	5 cut(s)	270, 705, 1400, 1458, 1550
SapI	GCTCTTC	1 cut(s)	1701
SatI	GCNGC	4 cut(s)	314, 529, 939, 1050
Sau96I	GGNCC	1 cut(s)	275
ScaI	AGTACT	1 cut(s)	1495
SchI	GAGTC	4 cut(s)	155, 421, 424, 968
ScrFI	CCNGG	4 cut(s)	1295, 1379, 1410, 1780
SduI	GDGCHC	1 cut(s)	1901
SfaNI	GCATC	5 cut(s)	35, 681, 700, 711, 2119
SfcI	CTRYAG	2 cut(s)	508, 1346
Sfr274I	CTCGAG	1 cut(s)	30
SlaI	CTCGAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	5 cut(s)	270, 705, 1400, 1458, 1550
SmlI	CTYRAG	5 cut(s)	30, 341, 1091, 1121, 2021
SmoI	CTYRAG	5 cut(s)	30, 341, 1091, 1121, 2021
SsiI	CCGC	3 cut(s)	283, 566, 827
SspMI	CTAG	5 cut(s)	395, 546, 950, 1386, 1491
StyD4I	CCNGG	4 cut(s)	1293, 1377, 1408, 1778
StyI	CCWWGG	1 cut(s)	1131
TaaI	ACNGT	6 cut(s)	46, 185, 201, 269, 992, 1280
TaiI	ACGT	3 cut(s)	310, 610, 1728
TaqI	TCGA	5 cut(s)	31, 577, 1599, 1625, 1911
TatI	WGTACW	1 cut(s)	1493
TfiI	GAWTC	9 cut(s)	16, 233, 644, 653, 946, 1018, 1622, 1802, 2108
TscAI	CASTG	4 cut(s)	156, 667, 976, 1906
TseFI	GTSAC	2 cut(s)	263, 1451
TseI	GCWGC	4 cut(s)	313, 528, 938, 1049
Tsp45I	GTSAC	2 cut(s)	263, 1451
TspGWI	ACGGA	1 cut(s)	1194
TspRI	CASTG	4 cut(s)	156, 667, 976, 1906
Vha464I	CTTAAG	2 cut(s)	1121, 2021
XapI	RAATTY	3 cut(s)	138, 458, 635
XceI	RCATGY	1 cut(s)	1818
XhoI	CTCGAG	1 cut(s)	30
XspI	CTAG	5 cut(s)	395, 546, 950, 1386, 1491
ZrmI	AGTACT	1 cut(s)	1495
Zsp2I	ATGCAT	1 cut(s)	1401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.