Rmu_co8380183.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8380183.1
OG0002771
Physical Location & Seq
Reverse (-)
2 .. 407
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8380183.1_g000001.1.cds

Sequence Viewer

Length: 406 bp
atggagcaaaaccctcttcaatccgacggcccagatggccttcccgtcaggtccacgaccctcataaccttctcccgccgaggccgaaaggggaatcctaaagctgctcagcagagacttgaaatcctcagaaaaaccctaaacccaattccctttgtgcgcgccaaaaacccgaacttgcagcgccatgaggagctcctgaagcgtctgggcctctgggactttctccacatccagtttgatccgactgttcgggctgatcttattgctgagttgatcgttaactatagccctcagcggcggtgcagctacgtcggtgaggtccggattagggtcagccctgccgatttgggacgcgcattgaagcttccggttggggtgaaatcgaagaagagtgtggttgcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.27

Weight (kDa)

10.73

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 162, 357
AccIII TCCGGA 1 cut(s) 324
AciI CCGC 3 cut(s) 76, 298, 301
AclWI GGATC 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 3 cut(s) 20, 122, 364
AluBI AGCT 4 cut(s) 104, 196, 309, 367
AluI AGCT 4 cut(s) 104, 196, 309, 367
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 4 cut(s) 28, 37, 82, 211
ApeKI GCWGC 3 cut(s) 104, 181, 306
AspLEI GCGC 4 cut(s) 162, 164, 186, 359
AspS9I GGNCC 4 cut(s) 29, 51, 211, 322
AsuHPI GGTGA 2 cut(s) 329, 391
AvaII GGWCC 2 cut(s) 51, 322
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 91, 193, 318
BccI CCATC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 43
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BcoDI GTCTC 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 286
BfoI RGCGCY 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 36
BisI GCNGC 4 cut(s) 105, 182, 299, 307
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 4 cut(s) 106, 183, 300, 308
Bme18I GGWCC 2 cut(s) 51, 322
BmgT120I GGNCC 4 cut(s) 29, 51, 211, 322
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 2 cut(s) 324, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 4 cut(s) 122, 142, 261, 308
BseNI ACTGG 1 cut(s) 235
BsePI GCGCGC 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 3 cut(s) 91, 193, 318
BsgI GTGCAG 1 cut(s) 325
Bsh1236I CGCG 2 cut(s) 162, 357
BshFI GGCC 4 cut(s) 30, 39, 84, 213
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 325, 371
BslFI GGGAC 2 cut(s) 233, 366
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 2 cut(s) 233, 366
BsnI GGCC 4 cut(s) 30, 39, 84, 213
Bsp1286I GDGCHC 1 cut(s) 198
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 3 cut(s) 241, 259, 276
Bsp1720I GCTNAGC 1 cut(s) 108
BspACI CCGC 3 cut(s) 76, 298, 301
BspANI GGCC 4 cut(s) 30, 39, 84, 213
BspCNI CTCAG 4 cut(s) 121, 141, 262, 307
BspEI TCCGGA 1 cut(s) 324
BspFNI CGCG 2 cut(s) 162, 357
BspPI GGATC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 79
BssHII GCGCGC 1 cut(s) 160
BssMI GATC 3 cut(s) 241, 259, 276
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 2 cut(s) 21, 386
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 4 cut(s) 108, 128, 270, 294
BstF5I GGATG 1 cut(s) 231
BstFNI CGCG 2 cut(s) 162, 357
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 4 cut(s) 162, 164, 186, 359
BstKTI GATC 3 cut(s) 244, 262, 279
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 3 cut(s) 241, 259, 276
BstMWI GCNNNNNNNGC 2 cut(s) 36, 202
BstSFI CTRYAG 1 cut(s) 286
BstUI CGCG 2 cut(s) 162, 357
BstV1I GCAGC 3 cut(s) 91, 193, 318
BsuRI GGCC 4 cut(s) 30, 39, 84, 213
BtsCI GGATG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 4 cut(s) 162, 164, 186, 359
Cfr13I GGNCC 4 cut(s) 29, 51, 211, 322
CseI GACGC 2 cut(s) 194, 363
CviAII CATG 1 cut(s) 188
DdeI CTNAG 4 cut(s) 108, 128, 270, 294
DpnI GATC 3 cut(s) 243, 261, 278
DpnII GATC 3 cut(s) 241, 259, 276
Eam1104I CTCTTC 2 cut(s) 21, 386
EarI CTCTTC 2 cut(s) 21, 386
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 51, 322
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 1 cut(s) 191
FaiI YATR 3 cut(s) 65, 189, 288
FaqI GGGAC 2 cut(s) 233, 366
FatI CATG 1 cut(s) 187
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 4 cut(s) 105, 182, 299, 307
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 4 cut(s) 105, 182, 299, 307
GlaI GCGC 4 cut(s) 161, 163, 185, 358
GluI GCNGC 4 cut(s) 105, 182, 299, 307
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 4 cut(s) 30, 39, 84, 213
HapII CCGG 2 cut(s) 325, 371
HgaI GACGC 2 cut(s) 194, 363
HhaI GCGC 4 cut(s) 162, 164, 186, 359
Hin1II CATG 1 cut(s) 191
Hin6I GCGC 4 cut(s) 160, 162, 184, 357
HinP1I GCGC 4 cut(s) 160, 162, 184, 357
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 1 cut(s) 94
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 2 cut(s) 325, 371
HphI GGTGA 2 cut(s) 329, 391
Hpy166II GTNNAC 2 cut(s) 54, 283
Hpy188I TCNGA 3 cut(s) 25, 131, 246
Hpy188III TCNNGA 2 cut(s) 199, 325
Hpy8I GTNNAC 2 cut(s) 54, 283
Hpy99I CGWCG 2 cut(s) 29, 317
HpyAV CCTTC 2 cut(s) 50, 79
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 3 cut(s) 181, 306, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 202
HpyF3I CTNAG 4 cut(s) 108, 128, 270, 294
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 1 cut(s) 191
HspAI GCGC 4 cut(s) 160, 162, 184, 357
Kpn2I TCCGGA 1 cut(s) 324
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 3 cut(s) 241, 259, 276
LmnI GCTCC 3 cut(s) 4, 193, 201
LpnPI CCDG 9 cut(s) 34, 45, 194, 202, 212, 248, 338, 354, 384
Lsp1109I GCAGC 3 cut(s) 91, 193, 318
MaeII ACGT 1 cut(s) 312
MalI GATC 3 cut(s) 243, 261, 278
MboI GATC 3 cut(s) 241, 259, 276
MboII GAAGA 3 cut(s) 8, 400, 403
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 147
MmeI TCCRAC 2 cut(s) 48, 269
MnlI CCTC 8 cut(s) 24, 71, 74, 137, 184, 224, 303, 313
MroI TCCGGA 1 cut(s) 324
MseI TTAA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 2 cut(s) 325, 371
MvnI CGCG 2 cut(s) 162, 357
MwoI GCNNNNNNNGC 2 cut(s) 36, 202
NdeII GATC 3 cut(s) 241, 259, 276
NlaIII CATG 1 cut(s) 191
NmeAIII GCCGAG 1 cut(s) 104
PauI GCGCGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 4 cut(s) 106, 183, 300, 308
Psp124BI GAGCTC 1 cut(s) 198
PspPI GGNCC 4 cut(s) 29, 51, 211, 322
PteI GCGCGC 1 cut(s) 160
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 4 cut(s) 105, 182, 299, 307
Sau3AI GATC 3 cut(s) 241, 259, 276
Sau96I GGNCC 4 cut(s) 29, 51, 211, 322
SduI GDGCHC 1 cut(s) 198
SetI ASST 8 cut(s) 53, 71, 106, 198, 311, 315, 324, 369
SfcI CTRYAG 1 cut(s) 286
SfiI GGCCNNNNNGGCC 1 cut(s) 36
SinI GGWCC 2 cut(s) 51, 322
Sse9I AATT 1 cut(s) 147
SsiI CCGC 3 cut(s) 76, 298, 301
SstI GAGCTC 1 cut(s) 198
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 315
TaqI TCGA 1 cut(s) 386
TasI AATT 1 cut(s) 147
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseI GCWGC 3 cut(s) 104, 181, 306
VpaK11BI GGWCC 2 cut(s) 51, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.