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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42370 AT3G58110 AT3G58110 |
| fragaria_vesca | FvH4_3g11260 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 |
| malus_domestica | MD09G1139300.v1.1 MD17G1128800.v1.1 |
| prunus_persica | Prupe.8G044600_v2.0.a1 Prupe.8G044600_v2.0.a1 |
| pyrus_communis | pycom09g05990 |
| rosa_chinensis | RchiOBHm_Chr2g0128861 RchiOBHm_Chr5g0053351 |
| rosa_laevigata | RLG00000019034 RLG00000034768 |
| rosa_multiflora | Rmu_co8379445.1_g000001 Rmu_co8380183.1_g000001 Rmu_sc0001643.1_g000032 Rmu_sc0001966.1_g000005 Rmu_sc0038988.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00029080 Rroxscaffold_2G00115160 |
| rosa_rugosa | Rorug02G0281900 Rorug02G0282000 Rorug05G0267400 |
| rosa_samantha | Rh2AG334400 Rh2BG342400 Rh2CG321300 Rh2DG359100 Rh5AG339900 Rh5BG350300 Rh5CG376800 Rh5DG364400 |
| rosa_wichuraiana | Rw2G027050 Rw5G032100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1294 |
| AccI | GTMKAC | 1 cut(s) | 595 |
| AccII | CGCG | 1 cut(s) | 357 |
| AccIII | TCCGGA | 1 cut(s) | 324 |
| AciI | CCGC | 8 cut(s) | 76, 162, 205, 298, 301, 428, 431, 1162 |
| AclWI | GGATC | 1 cut(s) | 236 |
| AcoI | YGGCCR | 1 cut(s) | 1362 |
| AcsI | RAATTY | 5 cut(s) | 538, 875, 935, 1091, 2033 |
| AcuI | CTGAAG | 2 cut(s) | 221, 1272 |
| AcyI | GRCGYC | 1 cut(s) | 1981 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 331, 1907 |
| AflII | CTTAAG | 1 cut(s) | 587 |
| AflIII | ACRYGT | 1 cut(s) | 1542 |
| AgsI | TTSAA | 9 cut(s) | 20, 122, 364, 1257, 1804, 1994, 2015, 2039, 2060 |
| AjiI | CACGTC | 1 cut(s) | 1543 |
| AjnI | CCWGG | 3 cut(s) | 1402, 1724, 1900 |
| AleI | CACNNNNGTG | 1 cut(s) | 2052 |
| Alw21I | GWGCWC | 2 cut(s) | 198, 1713 |
| Alw26I | GTCTC | 4 cut(s) | 1436, 1481, 1741, 2135 |
| AlwI | GGATC | 1 cut(s) | 236 |
| Ama87I | CYCGRG | 1 cut(s) | 1929 |
| Aor13HI | TCCGGA | 1 cut(s) | 324 |
| AoxI | GGCC | 7 cut(s) | 28, 37, 82, 211, 1318, 1362, 1722 |
| ApeKI | GCWGC | 7 cut(s) | 104, 181, 306, 1159, 1591, 1663, 1666 |
| ApoI | RAATTY | 5 cut(s) | 538, 875, 935, 1091, 2033 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1944 |
| AspLEI | GCGC | 2 cut(s) | 186, 359 |
| AspS9I | GGNCC | 7 cut(s) | 29, 51, 322, 1148, 1318, 1390, 1728 |
| AsuC2I | CCSGG | 1 cut(s) | 1530 |
| AsuHPI | GGTGA | 4 cut(s) | 329, 1046, 1544, 1999 |
| AvaI | CYCGRG | 1 cut(s) | 1929 |
| AvaII | GGWCC | 5 cut(s) | 51, 322, 1148, 1390, 1728 |
| BaeGI | GKGCMC | 1 cut(s) | 162 |
| BalI | TGGCCA | 1 cut(s) | 1364 |
| BanII | GRGCYC | 1 cut(s) | 198 |
| BbsI | GAAGAC | 3 cut(s) | 1278, 1653, 1740 |
| Bbv12I | GWGCWC | 2 cut(s) | 198, 1713 |
| BbvCI | CCTCAGC | 1 cut(s) | 294 |
| BbvI | GCAGC | 7 cut(s) | 91, 193, 318, 1171, 1603, 1675, 1678 |
| BccI | CCATC | 5 cut(s) | 29, 719, 1475, 1499, 1594 |
| BceAI | ACGGC | 1 cut(s) | 43 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 295, 329 |
| BciT130I | CCWGG | 3 cut(s) | 1404, 1726, 1902 |
| BclI | TGATCA | 3 cut(s) | 1231, 1354, 1468 |
| BcnI | CCSGG | 1 cut(s) | 1530 |
| BcoDI | GTCTC | 4 cut(s) | 1436, 1481, 1741, 2135 |
| BfaI | CTAG | 4 cut(s) | 209, 687, 1046, 1611 |
| BfmI | CTRYAG | 4 cut(s) | 110, 596, 1810, 1888 |
| BfoI | RGCGCY | 1 cut(s) | 187 |
| BfrI | CTTAAG | 1 cut(s) | 587 |
| BfuAI | ACCTGC | 1 cut(s) | 1294 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 36 |
| Bme1390I | CCNGG | 4 cut(s) | 1404, 1530, 1726, 1902 |
| Bme18I | GGWCC | 5 cut(s) | 51, 322, 1148, 1390, 1728 |
| BmeT110I | CYCGRG | 1 cut(s) | 1929 |
| BmgBI | CACGTC | 1 cut(s) | 1543 |
| BmgT120I | GGNCC | 7 cut(s) | 29, 51, 322, 1148, 1318, 1390, 1728 |
| BmiI | GGNNCC | 4 cut(s) | 6, 423, 1319, 1391 |
| BmrFI | CCNGG | 4 cut(s) | 1404, 1530, 1726, 1902 |
| BmsI | GCATC | 3 cut(s) | 629, 1515, 1779 |
| BoxI | GACNNNNGTC | 1 cut(s) | 682 |
| BpiI | GAAGAC | 3 cut(s) | 1278, 1653, 1740 |
| Bpu10I | CCTNAGC | 1 cut(s) | 294 |
| BpuEI | CTTGAG | 1 cut(s) | 1418 |
| BpuMI | CCSGG | 1 cut(s) | 1530 |
| Bsa29I | ATCGAT | 1 cut(s) | 437 |
| BsaHI | GRCGYC | 1 cut(s) | 1981 |
| BsaI | GGTCTC | 2 cut(s) | 1436, 1481 |
| BsaJI | CCNNGG | 2 cut(s) | 497, 1382 |
| BsaWI | WCCGGW | 2 cut(s) | 324, 370 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 686, 716, 1268, 1298 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 331, 1907 |
| Bse1I | ACTGG | 2 cut(s) | 235, 1680 |
| BseAI | TCCGGA | 1 cut(s) | 324 |
| BseBI | CCWGG | 3 cut(s) | 1404, 1726, 1902 |
| BseCI | ATCGAT | 1 cut(s) | 437 |
| BseDI | CCNNGG | 2 cut(s) | 497, 1382 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 331, 1907 |
| BseMII | CTCAG | 6 cut(s) | 142, 261, 308, 662, 1345, 1746 |
| BseNI | ACTGG | 2 cut(s) | 235, 1680 |
| BseRI | GAGGAG | 3 cut(s) | 206, 431, 785 |
| BseSI | GKGCMC | 1 cut(s) | 162 |
| BseXI | GCAGC | 7 cut(s) | 91, 193, 318, 1171, 1603, 1675, 1678 |
| BseYI | CCCAGC | 2 cut(s) | 1127, 2018 |
| BsgI | GTGCAG | 1 cut(s) | 325 |
| Bsh1236I | CGCG | 1 cut(s) | 357 |
| BshFI | GGCC | 7 cut(s) | 30, 39, 84, 213, 1320, 1364, 1724 |
| BshVI | ATCGAT | 1 cut(s) | 437 |
| BsiHKAI | GWGCWC | 2 cut(s) | 198, 1713 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1929 |
| BsiSI | CCGG | 4 cut(s) | 325, 371, 425, 1529 |
| BslFI | GGGAC | 4 cut(s) | 233, 366, 690, 1403 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 331, 1907 |
| BsmAI | GTCTC | 4 cut(s) | 1436, 1481, 1741, 2135 |
| BsmFI | GGGAC | 4 cut(s) | 233, 366, 690, 1403 |
| BsnI | GGCC | 7 cut(s) | 30, 39, 84, 213, 1320, 1364, 1724 |
| Bso31I | GGTCTC | 2 cut(s) | 1436, 1481 |
| BsoBI | CYCGRG | 1 cut(s) | 1929 |
| Bsp1286I | GDGCHC | 3 cut(s) | 162, 198, 1713 |
| Bsp13I | TCCGGA | 1 cut(s) | 324 |
| Bsp143I | GATC | 5 cut(s) | 241, 259, 1231, 1354, 1468 |
| BspACI | CCGC | 8 cut(s) | 76, 162, 205, 298, 301, 428, 431, 1162 |
| BspANI | GGCC | 7 cut(s) | 30, 39, 84, 213, 1320, 1364, 1724 |
| BspCNI | CTCAG | 6 cut(s) | 141, 262, 307, 661, 1344, 1747 |
| BspDI | ATCGAT | 1 cut(s) | 437 |
| BspEI | TCCGGA | 1 cut(s) | 324 |
| BspFNI | CGCG | 1 cut(s) | 357 |
| BspHI | TCATGA | 1 cut(s) | 2168 |
| BspLI | GGNNCC | 4 cut(s) | 6, 423, 1319, 1391 |
| BspMAI | CTGCAG | 1 cut(s) | 114 |
| BspMI | ACCTGC | 1 cut(s) | 1294 |
| BspPI | GGATC | 1 cut(s) | 236 |
| BspQI | GCTCTTC | 1 cut(s) | 1098 |
| BspTI | CTTAAG | 1 cut(s) | 587 |
| BspTNI | GGTCTC | 2 cut(s) | 1436, 1481 |
| BsrI | ACTGG | 2 cut(s) | 235, 1680 |
| BssECI | CCNNGG | 2 cut(s) | 497, 1382 |
| BssMI | GATC | 5 cut(s) | 241, 259, 1231, 1354, 1468 |
| BssNI | GRCGYC | 1 cut(s) | 1981 |
| BssT1I | CCWWGG | 1 cut(s) | 1382 |
| Bst2UI | CCWGG | 3 cut(s) | 1404, 1726, 1902 |
| Bst4CI | ACNGT | 3 cut(s) | 250, 600, 2118 |
| Bst6I | CTCTTC | 8 cut(s) | 21, 386, 714, 1098, 1212, 1218, 1739, 1962 |
| BstACI | GRCGYC | 1 cut(s) | 1981 |
| BstAFI | CTTAAG | 1 cut(s) | 587 |
| BstC8I | GCNNGC | 2 cut(s) | 162, 1861 |
| BstDEI | CTNAG | 6 cut(s) | 128, 270, 294, 648, 1331, 1755 |
| BstDSI | CCRYGG | 1 cut(s) | 497 |
| BstFNI | CGCG | 1 cut(s) | 357 |
| BstH2I | RGCGCY | 1 cut(s) | 187 |
| BstHHI | GCGC | 2 cut(s) | 186, 359 |
| BstKTI | GATC | 5 cut(s) | 244, 262, 1234, 1357, 1471 |
| BstMAI | GTCTC | 4 cut(s) | 1436, 1481, 1741, 2135 |
| BstMBI | GATC | 5 cut(s) | 241, 259, 1231, 1354, 1468 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 36, 202, 428, 1561, 1826 |
| BstNI | CCWGG | 3 cut(s) | 1404, 1726, 1902 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 682 |
| BstSCI | CCNGG | 4 cut(s) | 1402, 1528, 1724, 1900 |
| BstSFI | CTRYAG | 4 cut(s) | 110, 596, 1810, 1888 |
| BstSLI | GKGCMC | 1 cut(s) | 162 |
| BstUI | CGCG | 1 cut(s) | 357 |
| BstV1I | GCAGC | 7 cut(s) | 91, 193, 318, 1171, 1603, 1675, 1678 |
| BstV2I | GAAGAC | 3 cut(s) | 1278, 1653, 1740 |
| Bsu15I | ATCGAT | 1 cut(s) | 437 |
| BsuRI | GGCC | 7 cut(s) | 30, 39, 84, 213, 1320, 1364, 1724 |
| BsuTUI | ATCGAT | 1 cut(s) | 437 |
| BtgI | CCRYGG | 1 cut(s) | 497 |
| BtgZI | GCGATG | 1 cut(s) | 606 |
| BtrI | CACGTC | 1 cut(s) | 1543 |
| BtsI | GCAGTG | 3 cut(s) | 1346, 1571, 1601 |
| BtsIMutI | CAGTG | 4 cut(s) | 656, 1346, 1571, 1601 |
| BveI | ACCTGC | 1 cut(s) | 1294 |
| Cac8I | GCNNGC | 2 cut(s) | 162, 1861 |
| CciI | TCATGA | 1 cut(s) | 2168 |
| CfoI | GCGC | 2 cut(s) | 186, 359 |
| Cfr13I | GGNCC | 7 cut(s) | 29, 51, 322, 1148, 1318, 1390, 1728 |
| ClaI | ATCGAT | 1 cut(s) | 437 |
| CseI | GACGC | 3 cut(s) | 363, 1658, 1970 |
| CviAII | CATG | 9 cut(s) | 188, 568, 1175, 1309, 1352, 1451, 1472, 1775, 2169 |
| DdeI | CTNAG | 6 cut(s) | 128, 270, 294, 648, 1331, 1755 |
| DpnI | GATC | 5 cut(s) | 243, 261, 1233, 1356, 1470 |
| DpnII | GATC | 5 cut(s) | 241, 259, 1231, 1354, 1468 |
| DraI | TTTAAA | 1 cut(s) | 1824 |
| EaeI | YGGCCR | 1 cut(s) | 1362 |
| Eam1104I | CTCTTC | 8 cut(s) | 21, 386, 714, 1098, 1212, 1218, 1739, 1962 |
| EarI | CTCTTC | 8 cut(s) | 21, 386, 714, 1098, 1212, 1218, 1739, 1962 |
| EciI | GGCGGA | 1 cut(s) | 446 |
| Ecl136II | GAGCTC | 1 cut(s) | 196 |
| Eco130I | CCWWGG | 1 cut(s) | 1382 |
| Eco147I | AGGCCT | 1 cut(s) | 213 |
| Eco24I | GRGCYC | 1 cut(s) | 198 |
| Eco31I | GGTCTC | 2 cut(s) | 1436, 1481 |
| Eco32I | GATATC | 1 cut(s) | 517 |
| Eco47I | GGWCC | 5 cut(s) | 51, 322, 1148, 1390, 1728 |
| Eco53kI | GAGCTC | 1 cut(s) | 196 |
| Eco57I | CTGAAG | 2 cut(s) | 221, 1272 |
| Eco88I | CYCGRG | 1 cut(s) | 1929 |
| EcoICRI | GAGCTC | 1 cut(s) | 196 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1148, 1390 |
| EcoRII | CCWGG | 3 cut(s) | 1402, 1724, 1900 |
| EcoRV | GATATC | 1 cut(s) | 517 |
| EcoT14I | CCWWGG | 1 cut(s) | 1382 |
| EcoT22I | ATGCAT | 1 cut(s) | 622 |
| EcoT38I | GRGCYC | 1 cut(s) | 198 |
| ErhI | CCWWGG | 1 cut(s) | 1382 |
| FaeI | CATG | 9 cut(s) | 191, 571, 1178, 1312, 1355, 1454, 1475, 1778, 2172 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1135, 1167, 1934, 1966, 2088, 2120 |
| FaqI | GGGAC | 4 cut(s) | 233, 366, 690, 1403 |
| FatI | CATG | 9 cut(s) | 187, 567, 1174, 1308, 1351, 1450, 1471, 1774, 2168 |
| FauI | CCCGC | 2 cut(s) | 83, 169 |
| FbaI | TGATCA | 3 cut(s) | 1231, 1354, 1468 |
| FblI | GTMKAC | 1 cut(s) | 595 |
| FriOI | GRGCYC | 1 cut(s) | 198 |
| FspBI | CTAG | 4 cut(s) | 209, 687, 1046, 1611 |
| GlaI | GCGC | 2 cut(s) | 185, 358 |
| GsaI | CCCAGC | 2 cut(s) | 1131, 2022 |
| HaeII | RGCGCY | 1 cut(s) | 187 |
| HaeIII | GGCC | 7 cut(s) | 30, 39, 84, 213, 1320, 1364, 1724 |
| HapII | CCGG | 4 cut(s) | 325, 371, 425, 1529 |
| HgaI | GACGC | 3 cut(s) | 363, 1658, 1970 |
| HhaI | GCGC | 2 cut(s) | 186, 359 |
| Hin1I | GRCGYC | 1 cut(s) | 1981 |
| Hin1II | CATG | 9 cut(s) | 191, 571, 1178, 1312, 1355, 1454, 1475, 1778, 2172 |
| Hin6I | GCGC | 2 cut(s) | 184, 357 |
| HinP1I | GCGC | 2 cut(s) | 184, 357 |
| HincII | GTYRAC | 3 cut(s) | 283, 976, 1006 |
| HindII | GTYRAC | 3 cut(s) | 283, 976, 1006 |
| HindIII | AAGCTT | 2 cut(s) | 365, 1943 |
| HinfI | GANTC | 5 cut(s) | 94, 434, 493, 701, 2165 |
| HpaI | GTTAAC | 1 cut(s) | 283 |
| HpaII | CCGG | 4 cut(s) | 325, 371, 425, 1529 |
| HphI | GGTGA | 4 cut(s) | 329, 1046, 1544, 1999 |
| Hpy166II | GTNNAC | 6 cut(s) | 54, 283, 596, 976, 1006, 2121 |
| Hpy188I | TCNGA | 6 cut(s) | 25, 131, 246, 670, 1468, 2140 |
| Hpy188III | TCNNGA | 9 cut(s) | 199, 325, 1235, 1290, 1435, 1478, 1801, 1931, 2169 |
| Hpy8I | GTNNAC | 6 cut(s) | 54, 283, 596, 976, 1006, 2121 |
| Hpy99I | CGWCG | 2 cut(s) | 29, 317 |
| HpyAV | CCTTC | 9 cut(s) | 50, 79, 667, 700, 1126, 1307, 1386, 1810, 2086 |
| HpyCH4III | ACNGT | 3 cut(s) | 250, 600, 2118 |
| HpyCH4IV | ACGT | 2 cut(s) | 312, 1542 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 36, 202, 428, 1561, 1826 |
| HpyF3I | CTNAG | 6 cut(s) | 128, 270, 294, 648, 1331, 1755 |
| HpySE526I | ACGT | 2 cut(s) | 312, 1542 |
| Hsp92I | GRCGYC | 1 cut(s) | 1981 |
| Hsp92II | CATG | 9 cut(s) | 191, 571, 1178, 1312, 1355, 1454, 1475, 1778, 2172 |
| HspAI | GCGC | 2 cut(s) | 184, 357 |
| Kpn2I | TCCGGA | 1 cut(s) | 324 |
| Ksp22I | TGATCA | 3 cut(s) | 1231, 1354, 1468 |
| KspAI | GTTAAC | 1 cut(s) | 283 |
| Kzo9I | GATC | 5 cut(s) | 241, 259, 1231, 1354, 1468 |
| LguI | GCTCTTC | 1 cut(s) | 1098 |
| LmnI | GCTCC | 6 cut(s) | 4, 193, 201, 427, 772, 1552 |
| Lsp1109I | GCAGC | 7 cut(s) | 91, 193, 318, 1171, 1603, 1675, 1678 |
| LweI | GCATC | 3 cut(s) | 629, 1515, 1779 |
| MaeI | CTAG | 4 cut(s) | 209, 687, 1046, 1611 |
| MaeII | ACGT | 2 cut(s) | 312, 1542 |
| MaeIII | GTNAC | 2 cut(s) | 611, 1532 |
| MalI | GATC | 5 cut(s) | 243, 261, 1233, 1356, 1470 |
| MboI | GATC | 5 cut(s) | 241, 259, 1231, 1354, 1468 |
| MfeI | CAATTG | 1 cut(s) | 466 |
| MhlI | GDGCHC | 3 cut(s) | 162, 198, 1713 |
| MlsI | TGGCCA | 1 cut(s) | 1364 |
| MluNI | TGGCCA | 1 cut(s) | 1364 |
| MlyI | GAGTC | 1 cut(s) | 710 |
| MmeI | TCCRAC | 2 cut(s) | 48, 269 |
| Mox20I | TGGCCA | 1 cut(s) | 1364 |
| Mph1103I | ATGCAT | 1 cut(s) | 622 |
| MroI | TCCGGA | 1 cut(s) | 324 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1944 |
| MscI | TGGCCA | 1 cut(s) | 1364 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1455, 2052 |
| Msp20I | TGGCCA | 1 cut(s) | 1364 |
| MspA1I | CMGCKG | 2 cut(s) | 298, 1162 |
| MspCI | CTTAAG | 1 cut(s) | 587 |
| MspI | CCGG | 4 cut(s) | 325, 371, 425, 1529 |
| MspR9I | CCNGG | 4 cut(s) | 1404, 1530, 1726, 1902 |
| MunI | CAATTG | 1 cut(s) | 466 |
| MvaI | CCWGG | 3 cut(s) | 1404, 1726, 1902 |
| MvnI | CGCG | 1 cut(s) | 357 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 36, 202, 428, 1561, 1826 |
| NciI | CCSGG | 1 cut(s) | 1530 |
| NdeII | GATC | 5 cut(s) | 241, 259, 1231, 1354, 1468 |
| NlaIII | CATG | 9 cut(s) | 191, 571, 1178, 1312, 1355, 1454, 1475, 1778, 2172 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 423, 1319, 1391 |
| NmuCI | GTSAC | 1 cut(s) | 1532 |
| NsiI | ATGCAT | 1 cut(s) | 622 |
| OliI | CACNNNNGTG | 1 cut(s) | 2052 |
| PaeR7I | CTCGAG | 1 cut(s) | 1929 |
| PagI | TCATGA | 1 cut(s) | 2168 |
| PceI | AGGCCT | 1 cut(s) | 213 |
| PciSI | GCTCTTC | 1 cut(s) | 1098 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1944 |
| PfeI | GAWTC | 4 cut(s) | 94, 434, 493, 2165 |
| PfoI | TCCNGGA | 1 cut(s) | 1402 |
| PleI | GAGTC | 1 cut(s) | 709 |
| PpsI | GAGTC | 1 cut(s) | 709 |
| PpuMI | RGGWCCY | 2 cut(s) | 1148, 1390 |
| PshAI | GACNNNNGTC | 1 cut(s) | 682 |
| Psp124BI | GAGCTC | 1 cut(s) | 198 |
| Psp5II | RGGWCCY | 2 cut(s) | 1148, 1390 |
| Psp6I | CCWGG | 3 cut(s) | 1402, 1724, 1900 |
| PspFI | CCCAGC | 2 cut(s) | 1127, 2018 |
| PspGI | CCWGG | 3 cut(s) | 1402, 1724, 1900 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 423, 1319, 1391 |
| PspPI | GGNCC | 7 cut(s) | 29, 51, 322, 1148, 1318, 1390, 1728 |
| PspPPI | RGGWCCY | 2 cut(s) | 1148, 1390 |
| PstI | CTGCAG | 1 cut(s) | 114 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1455, 2052 |
| SacI | GAGCTC | 1 cut(s) | 198 |
| SapI | GCTCTTC | 1 cut(s) | 1098 |
| Sau3AI | GATC | 5 cut(s) | 241, 259, 1231, 1354, 1468 |
| Sau96I | GGNCC | 7 cut(s) | 29, 51, 322, 1148, 1318, 1390, 1728 |
| SchI | GAGTC | 1 cut(s) | 710 |
| ScrFI | CCNGG | 4 cut(s) | 1404, 1530, 1726, 1902 |
| SduI | GDGCHC | 3 cut(s) | 162, 198, 1713 |
| SfaNI | GCATC | 3 cut(s) | 629, 1515, 1779 |
| SfcI | CTRYAG | 4 cut(s) | 110, 596, 1810, 1888 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 36 |
| Sfr274I | CTCGAG | 1 cut(s) | 1929 |
| SinI | GGWCC | 5 cut(s) | 51, 322, 1148, 1390, 1728 |
| SlaI | CTCGAG | 1 cut(s) | 1929 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1455, 2052 |
| SmlI | CTYRAG | 3 cut(s) | 587, 1433, 1929 |
| SmoI | CTYRAG | 3 cut(s) | 587, 1433, 1929 |
| SseBI | AGGCCT | 1 cut(s) | 213 |
| SsiI | CCGC | 8 cut(s) | 76, 162, 205, 298, 301, 428, 431, 1162 |
| SspI | AATATT | 1 cut(s) | 781 |
| SspMI | CTAG | 4 cut(s) | 209, 687, 1046, 1611 |
| SstI | GAGCTC | 1 cut(s) | 198 |
| StuI | AGGCCT | 1 cut(s) | 213 |
| StyD4I | CCNGG | 4 cut(s) | 1402, 1528, 1724, 1900 |
| StyI | CCWWGG | 1 cut(s) | 1382 |
| TaaI | ACNGT | 3 cut(s) | 250, 600, 2118 |
| TaiI | ACGT | 2 cut(s) | 315, 1545 |
| TaqI | TCGA | 9 cut(s) | 386, 437, 704, 1086, 1248, 1479, 1707, 1930, 1938 |
| TaqII | GACCGA | 1 cut(s) | 1745 |
| TauI | GCSGC | 3 cut(s) | 208, 301, 431 |
| TfiI | GAWTC | 4 cut(s) | 94, 434, 493, 2165 |
| TscAI | CASTG | 4 cut(s) | 656, 1353, 1571, 1601 |
| TseFI | GTSAC | 1 cut(s) | 1532 |
| TseI | GCWGC | 7 cut(s) | 104, 181, 306, 1159, 1591, 1663, 1666 |
| Tsp45I | GTSAC | 1 cut(s) | 1532 |
| TspDTI | ATGAA | 6 cut(s) | 556, 1163, 1467, 1673, 1693, 2127 |
| TspRI | CASTG | 4 cut(s) | 656, 1353, 1571, 1601 |
| Vha464I | CTTAAG | 1 cut(s) | 587 |
| VpaK11BI | GGWCC | 5 cut(s) | 51, 322, 1148, 1390, 1728 |
| XapI | RAATTY | 5 cut(s) | 538, 875, 935, 1091, 2033 |
| XhoI | CTCGAG | 1 cut(s) | 1929 |
| XmiI | GTMKAC | 1 cut(s) | 595 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1944 |
| XspI | CTAG | 4 cut(s) | 209, 687, 1046, 1611 |
| Zsp2I | ATGCAT | 1 cut(s) | 622 |