Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038988.1

Orthogroup ID

OG0002771

Physical Location & Seq

Genomic Coordinates Forward (+)

1014 .. 1481

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038988.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ctgactcaaaccaagacaaccccgacgccttccccgtccgatctcctcagagccggaccgccataccctttgctcgcaagaagtgcaagaagatgggcaggaattcaaaagctgctcagaagaagctacagattctgcgccttccccgttcgatctcctcggagccagacagccataacattcgatcggagcattagggctgatcttctcgctcaattgatcgttaacttcaactcccagcagcaatgtagctacgtcaacaagcctaggattctagtcaaccggtctgatctgggatgcgcattgaagcttccggtgatgcttcaatcaaagaagagtgctatggaagatgccagtgaggagcagccaccagcgtcggaggagtcgaaagcttttctggaggatttggtttcgaattgggtgcttttgcataaggatattgggaaattatttaatctttgcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.46

Weight (kDa)

9.78

Isoelectric Point (pI)

75.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42370 AT3G58110 AT3G58110
fragaria_vesca	FvH4_3g11260 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000
malus_domestica	MD09G1139300.v1.1 MD17G1128800.v1.1
prunus_persica	Prupe.8G044600_v2.0.a1 Prupe.8G044600_v2.0.a1
pyrus_communis	pycom09g05990
rosa_chinensis	RchiOBHm_Chr2g0128861 RchiOBHm_Chr5g0053351
rosa_laevigata	RLG00000019034 RLG00000034768
rosa_multiflora	Rmu_co8379445.1_g000001 Rmu_co8380183.1_g000001 Rmu_sc0001643.1_g000032 Rmu_sc0001966.1_g000005 Rmu_sc0038988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029080 Rroxscaffold_2G00115160
rosa_rugosa	Rorug02G0281900 Rorug02G0282000 Rorug05G0267400
rosa_samantha	Rh2AG334400 Rh2BG342400 Rh2CG321300 Rh2DG359100 Rh5AG339900 Rh5BG350300 Rh5CG376800 Rh5DG364400
rosa_wichuraiana	Rw2G027050 Rw5G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	301
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	26
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	4 cut(s)	107, 232, 307, 326
AluBI	AGCT	5 cut(s)	112, 126, 252, 310, 392
AluI	AGCT	5 cut(s)	112, 126, 252, 310, 392
AlwNI	CAGNNNCTG	1 cut(s)	135
ApeKI	GCWGC	3 cut(s)	112, 241, 364
ApoI	RAATTY	1 cut(s)	102
AsiGI	ACCGGT	1 cut(s)	282
AspA2I	CCTAGG	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	140, 302
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	56
AvrII	CCTAGG	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	99, 253, 376
BccI	CCATC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BfaI	CTAG	2 cut(s)	267, 275
BfmI	CTRYAG	1 cut(s)	127
BisI	GCNGC	3 cut(s)	113, 242, 365
BlnI	CCTAGG	1 cut(s)	266
BlsI	GCNGC	3 cut(s)	114, 243, 366
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	164
BmsI	GCATC	3 cut(s)	287, 309, 340
BpmI	CTGGAG	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	158, 266
BsaWI	WCCGGW	2 cut(s)	282, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	158, 266
BseGI	GGATG	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	61, 130
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	4 cut(s)	35, 147, 374, 395
BseXI	GCAGC	3 cut(s)	99, 253, 376
BseYI	CCCAGC	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	187
BshTI	ACCGGT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	3 cut(s)	54, 283, 314
Bsp119I	TTCGAA	1 cut(s)	413
Bsp143I	GATC	6 cut(s)	40, 152, 184, 202, 219, 289
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	60, 129
BspLI	GGNNCC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	158, 266
BssMI	GATC	6 cut(s)	40, 152, 184, 202, 219, 289
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	47, 116
BstF5I	GGATG	1 cut(s)	302
BstHHI	GCGC	2 cut(s)	140, 302
BstKTI	GATC	6 cut(s)	43, 155, 187, 205, 222, 292
BstMBI	GATC	6 cut(s)	40, 152, 184, 202, 219, 289
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	99, 253, 376
BtsCI	GGATG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	135
CfoI	GCGC	2 cut(s)	140, 302
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	56
CpoI	CGGWCCG	1 cut(s)	56
CseI	GACGC	2 cut(s)	34, 363
CspAI	ACCGGT	1 cut(s)	282
CspI	CGGWCCG	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	47, 116
DpnI	GATC	6 cut(s)	42, 154, 186, 204, 221, 291
DpnII	GATC	6 cut(s)	40, 152, 184, 202, 219, 289
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaiI	YATR	4 cut(s)	64, 176, 344, 432
Fnu4HI	GCNGC	3 cut(s)	113, 242, 365
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	3 cut(s)	113, 242, 365
FspAI	RTGCGCAY	1 cut(s)	301
FspBI	CTAG	2 cut(s)	267, 275
FspI	TGCGCA	1 cut(s)	301
GlaI	GCGC	2 cut(s)	139, 301
GluI	GCNGC	3 cut(s)	113, 242, 365
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	1 cut(s)	419
HapII	CCGG	3 cut(s)	54, 283, 314
HgaI	GACGC	2 cut(s)	34, 363
HhaI	GCGC	2 cut(s)	140, 302
Hin1I	GRCGYC	1 cut(s)	26
Hin6I	GCGC	2 cut(s)	138, 300
HinP1I	GCGC	2 cut(s)	138, 300
HincII	GTYRAC	3 cut(s)	226, 259, 280
HindII	GTYRAC	3 cut(s)	226, 259, 280
HindIII	AAGCTT	2 cut(s)	308, 390
HinfI	GANTC	4 cut(s)	4, 132, 271, 383
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	3 cut(s)	54, 283, 314
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	3 cut(s)	226, 259, 280
Hpy188I	TCNGA	7 cut(s)	40, 50, 119, 162, 189, 289, 379
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	3 cut(s)	226, 259, 280
Hpy99I	CGWCG	2 cut(s)	28, 379
HpyAV	CCTTC	2 cut(s)	39, 151
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	86, 430, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	2 cut(s)	47, 116
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	26
HspAI	GCGC	2 cut(s)	138, 300
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	6 cut(s)	40, 152, 184, 202, 219, 289
LmnI	GCTCC	3 cut(s)	162, 189, 361
Lsp1109I	GCAGC	3 cut(s)	99, 253, 376
LweI	GCATC	3 cut(s)	287, 309, 340
MaeI	CTAG	2 cut(s)	267, 275
MaeII	ACGT	1 cut(s)	255
MalI	GATC	6 cut(s)	42, 154, 186, 204, 221, 291
MboI	GATC	6 cut(s)	40, 152, 184, 202, 219, 289
MboII	GAAGA	5 cut(s)	102, 132, 197, 346, 359
MfeI	CAATTG	1 cut(s)	215
MluCI	AATT	4 cut(s)	102, 215, 415, 446
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	5 cut(s)	56, 168, 352, 373, 394
MseI	TTAA	2 cut(s)	225, 453
MspI	CCGG	3 cut(s)	54, 283, 314
MunI	CAATTG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	6 cut(s)	40, 152, 184, 202, 219, 289
NlaIV	GGNNCC	1 cut(s)	164
NsbI	TGCGCA	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 383
PfeI	GAWTC	2 cut(s)	132, 271
PinAI	ACCGGT	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	114, 243, 366
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	135
PvuI	CGATCG	1 cut(s)	187
Rsr2I	CGGWCCG	1 cut(s)	56
RsrII	CGGWCCG	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	225, 453
SatI	GCNGC	3 cut(s)	113, 242, 365
Sau3AI	GATC	6 cut(s)	40, 152, 184, 202, 219, 289
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	392
SetI	ASST	6 cut(s)	114, 128, 254, 258, 312, 394
SfaNI	GCATC	3 cut(s)	287, 309, 340
SfcI	CTRYAG	1 cut(s)	127
SfuI	TTCGAA	1 cut(s)	413
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	4 cut(s)	102, 215, 415, 446
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	2 cut(s)	267, 275
StyI	CCWWGG	1 cut(s)	266
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	4 cut(s)	151, 183, 386, 413
TasI	AATT	4 cut(s)	102, 215, 415, 446
TfiI	GAWTC	2 cut(s)	132, 271
Tru1I	TTAA	2 cut(s)	225, 453
Tru9I	TTAA	2 cut(s)	225, 453
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	3 cut(s)	112, 241, 364
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	102
XmaJI	CCTAGG	1 cut(s)	266
XspI	CTAG	2 cut(s)	267, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.