Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379445.1

Orthogroup ID

OG0002771

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1150

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgaagcctcaacccgactcaaaccaagacaaccccgacgccttccccgtccgatctccccggagccggaccgccataaccttcgctcgcaagaagcgcaagaagacgggcaggaatccgaaagcctctcagaagaagctggagattctgcgccaaaccctaaagccaatccccttcgtccccgccaaaaccctagacttcgacagccacgaggacctcctgaagcggctgggcttgtgggacttcgtccacatcaagttcgatcggagcattagggctgatctcctcgcccaattgatcgtcaacttcaactcccagcagcggtgtagctacgtcaacgagcttaggattctggttaaccggtccgatctgggacgcgcattgaagcttccggtgatgctcaagtccaagaagaccgccgtggaagatgccggcgaggagcagccgccggcctcggaggagtcgatagcttttctggaggatttggtttcgaattggatgcttttgcacggggatatgtggatgatgcccggcgaggtgttgagttataccaaagcaatcaaagaaggtcagtttgggaaggtggactgggctggtttggtttggtacatggtgaatgaggagctaggtaaggccacgcagttggagaattgttactatgcgtcgcatttgcagcatttgatcaagtcgcagaaggaggatttgttttcggtgaagcaagagtcgaaagtggagattgatttgaaggatgatgatgaggaagaagaggaagaggatggtggtggggatgtgaaaatggatgatgttcaggggggcagattggaggagaatgatattaagttgtgtctcgggcaagaaaatgtgaccaaagttgaggttgagcacgaaaacttggagaaagttgatgttgagcgagaagatgcggagaatgttgatgatgagcgagaagatgcggagaaagttgatgttgggaaagagaatgtggagaaagatgaagttgggcaagagaaggtggaggaagttgaggctgagcaagaaaatgtagagaaagttgattctcagcaaggaaatgcggagaaagttgacgttggagaagacaatgttgagaaagtttgtggtgaaacagagcgggttgaggttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

381

Amino Acids

43.5

Weight (kDa)

4.66

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42370 AT3G58110 AT3G58110
fragaria_vesca	FvH4_3g11260 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000
malus_domestica	MD09G1139300.v1.1 MD17G1128800.v1.1
prunus_persica	Prupe.8G044600_v2.0.a1 Prupe.8G044600_v2.0.a1
pyrus_communis	pycom09g05990
rosa_chinensis	RchiOBHm_Chr2g0128861 RchiOBHm_Chr5g0053351
rosa_laevigata	RLG00000019034 RLG00000034768
rosa_multiflora	Rmu_co8379445.1_g000001 Rmu_co8380183.1_g000001 Rmu_sc0001643.1_g000032 Rmu_sc0001966.1_g000005 Rmu_sc0038988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029080 Rroxscaffold_2G00115160
rosa_rugosa	Rorug02G0281900 Rorug02G0282000 Rorug05G0267400
rosa_samantha	Rh2AG334400 Rh2BG342400 Rh2CG321300 Rh2DG359100 Rh5AG339900 Rh5BG350300 Rh5CG376800 Rh5DG364400
rosa_wichuraiana	Rw2G027050 Rw5G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1129
AccII	CGCG	1 cut(s)	378
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	2 cut(s)	66, 321
AgeI	ACCGGT	1 cut(s)	360
AgsI	TTSAA	3 cut(s)	310, 385, 745
AjuI	GAANNNNNNNTTGG	2 cut(s)	558, 590
AluBI	AGCT	6 cut(s)	139, 330, 343, 388, 470, 625
AluI	AGCT	6 cut(s)	139, 330, 343, 388, 470, 625
Alw21I	GWGCWC	1 cut(s)	885
Alw26I	GTCTC	1 cut(s)	851
Ama87I	CYCGRG	1 cut(s)	848
AoxI	GGCC	2 cut(s)	450, 633
ApeKI	GCWGC	3 cut(s)	319, 442, 673
AsiGI	ACCGGT	1 cut(s)	360
AspLEI	GCGC	3 cut(s)	99, 153, 380
AspS9I	GGNCC	3 cut(s)	69, 214, 363
AsuC2I	CCSGG	2 cut(s)	61, 531
AsuHPI	GGTGA	4 cut(s)	406, 625, 724, 1130
AsuII	TTCGAA	1 cut(s)	491
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	3 cut(s)	69, 214, 363
BauI	CACGAG	1 cut(s)	209
BbsI	GAAGAC	3 cut(s)	110, 419, 1101
Bbv12I	GWGCWC	1 cut(s)	885
BbvI	GCAGC	3 cut(s)	331, 454, 685
BccI	CCATC	1 cut(s)	770
BceAI	ACGGC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BclI	TGATCA	1 cut(s)	681
BcnI	CCSGG	2 cut(s)	61, 531
BcoDI	GTCTC	1 cut(s)	851
BfaI	CTAG	2 cut(s)	194, 626
BisI	GCNGC	5 cut(s)	227, 320, 443, 446, 674
BlpI	GCTNAGC	1 cut(s)	1029
BlsI	GCNGC	5 cut(s)	228, 321, 444, 447, 675
Bme1390I	CCNGG	2 cut(s)	61, 531
Bme18I	GGWCC	3 cut(s)	69, 214, 363
BmeT110I	CYCGRG	1 cut(s)	848
BmgT120I	GGNCC	3 cut(s)	69, 214, 363
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	61, 531
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	6 cut(s)	387, 418, 489, 516, 910, 940
BmuI	ACTGGG	1 cut(s)	598
BpiI	GAAGAC	3 cut(s)	110, 419, 1101
BpmI	CTGGAG	2 cut(s)	161, 497
Bpu10I	CCTNAGC	1 cut(s)	344
Bpu1102I	GCTNAGC	1 cut(s)	1029
Bpu14I	TTCGAA	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	2 cut(s)	61, 531
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	59, 420, 453
BsaWI	WCCGGW	2 cut(s)	360, 391
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 689, 719
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 321
Bse118I	RCCGGY	3 cut(s)	360, 431, 448
Bse1I	ACTGG	1 cut(s)	593
BseDI	CCNNGG	3 cut(s)	59, 420, 453
BseGI	GGATG	6 cut(s)	504, 528, 754, 781, 793, 805
BseLI	CCNNNNNNNGG	2 cut(s)	66, 321
BseMII	CTCAG	3 cut(s)	143, 1020, 1073
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	5 cut(s)	275, 452, 473, 635, 839
BseXI	GCAGC	3 cut(s)	331, 454, 685
BseYI	CCCAGC	2 cut(s)	229, 315
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	452, 635
BshTI	ACCGGT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	885
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	7 cut(s)	61, 67, 361, 392, 432, 449, 531
BslFI	GGGAC	3 cut(s)	164, 254, 387
BslI	CCNNNNNNNGG	2 cut(s)	66, 321
BsmAI	GTCTC	1 cut(s)	851
BsmFI	GGGAC	3 cut(s)	164, 254, 387
BsnI	GGCC	2 cut(s)	452, 635
BsoBI	CYCGRG	1 cut(s)	848
Bsp119I	TTCGAA	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	885
Bsp143I	GATC	6 cut(s)	53, 262, 280, 297, 367, 681
Bsp1720I	GCTNAGC	1 cut(s)	1029
BspANI	GGCC	2 cut(s)	452, 635
BspCNI	CTCAG	3 cut(s)	142, 1021, 1072
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	1129
BsrFI	RCCGGY	3 cut(s)	360, 431, 448
BsrI	ACTGG	1 cut(s)	593
BssAI	RCCGGY	3 cut(s)	360, 431, 448
BssECI	CCNNGG	3 cut(s)	59, 420, 453
BssMI	GATC	6 cut(s)	53, 262, 280, 297, 367, 681
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst6I	CTCTTC	2 cut(s)	759, 765
BstACI	GRCGYC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	491
BstC8I	GCNNGC	3 cut(s)	88, 433, 450
BstDEI	CTNAG	4 cut(s)	129, 344, 1029, 1059
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	6 cut(s)	504, 528, 754, 781, 793, 805
BstFNI	CGCG	1 cut(s)	378
BstHHI	GCGC	3 cut(s)	99, 153, 380
BstKTI	GATC	6 cut(s)	56, 265, 283, 300, 370, 684
BstMAI	GTCTC	1 cut(s)	851
BstMBI	GATC	6 cut(s)	53, 262, 280, 297, 367, 681
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 673
BstSCI	CCNGG	2 cut(s)	59, 529
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	331, 454, 685
BstV2I	GAAGAC	3 cut(s)	110, 419, 1101
BstXI	CCANNNNNNTGG	1 cut(s)	643
BsuRI	GGCC	2 cut(s)	452, 635
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	6 cut(s)	504, 528, 754, 781, 793, 805
Cac8I	GCNNGC	3 cut(s)	88, 433, 450
CfoI	GCGC	3 cut(s)	99, 153, 380
Cfr10I	RCCGGY	3 cut(s)	360, 431, 448
Cfr13I	GGNCC	3 cut(s)	69, 214, 363
CpoI	CGGWCCG	2 cut(s)	69, 363
CseI	GACGC	3 cut(s)	47, 384, 651
Csp6I	GTAC	1 cut(s)	607
CspAI	ACCGGT	1 cut(s)	360
CspI	CGGWCCG	2 cut(s)	69, 363
CviAII	CATG	1 cut(s)	610
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	4 cut(s)	129, 344, 1029, 1059
DpnI	GATC	6 cut(s)	55, 264, 282, 299, 369, 683
DpnII	GATC	6 cut(s)	53, 262, 280, 297, 367, 681
Eam1104I	CTCTTC	2 cut(s)	759, 765
EarI	CTCTTC	2 cut(s)	759, 765
Eco47I	GGWCC	3 cut(s)	69, 214, 363
Eco57I	CTGAAG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	848
EcoO109I	RGGNCCY	1 cut(s)	214
FaeI	CATG	1 cut(s)	613
FaiI	YATR	5 cut(s)	77, 518, 549, 611, 660
FaqI	GGGAC	3 cut(s)	164, 254, 387
FatI	CATG	1 cut(s)	609
FauI	CCCGC	2 cut(s)	190, 1122
FbaI	TGATCA	1 cut(s)	681
Fnu4HI	GCNGC	5 cut(s)	227, 320, 443, 446, 674
FokI	GGATG	6 cut(s)	511, 535, 761, 788, 800, 812
Fsp4HI	GCNGC	5 cut(s)	227, 320, 443, 446, 674
FspBI	CTAG	2 cut(s)	194, 626
GlaI	GCGC	3 cut(s)	98, 152, 379
GluI	GCNGC	5 cut(s)	227, 320, 443, 446, 674
GsaI	CCCAGC	2 cut(s)	233, 319
GsuI	CTGGAG	2 cut(s)	161, 497
HaeIII	GGCC	2 cut(s)	452, 635
HapII	CCGG	7 cut(s)	61, 67, 361, 392, 432, 449, 531
HgaI	GACGC	3 cut(s)	47, 384, 651
HhaI	GCGC	3 cut(s)	99, 153, 380
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	613
Hin6I	GCGC	3 cut(s)	97, 151, 378
HinP1I	GCGC	3 cut(s)	97, 151, 378
HincII	GTYRAC	4 cut(s)	304, 337, 358, 1084
HindII	GTYRAC	4 cut(s)	304, 337, 358, 1084
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	7 cut(s)	17, 115, 145, 349, 461, 722, 1055
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	7 cut(s)	61, 67, 361, 392, 432, 449, 531
HphI	GGTGA	4 cut(s)	406, 625, 724, 1130
Hpy166II	GTNNAC	6 cut(s)	250, 304, 337, 358, 586, 1084
Hpy188I	TCNGA	6 cut(s)	53, 120, 132, 267, 367, 457
Hpy188III	TCNNGA	2 cut(s)	220, 476
Hpy8I	GTNNAC	6 cut(s)	250, 304, 337, 358, 586, 1084
Hpy99I	CGWCG	2 cut(s)	41, 667
HpyAV	CCTTC	8 cut(s)	52, 91, 184, 560, 574, 688, 739, 1003
HpyCH4IV	ACGT	2 cut(s)	333, 1086
HpyCH4V	TGCA	2 cut(s)	508, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 673
HpyF3I	CTNAG	4 cut(s)	129, 344, 1029, 1059
HpySE526I	ACGT	2 cut(s)	333, 1086
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	613
HspAI	GCGC	3 cut(s)	97, 151, 378
KroI	GCCGGC	2 cut(s)	431, 448
KroNI	GCCGGC	2 cut(s)	433, 450
Ksp22I	TGATCA	1 cut(s)	681
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	6 cut(s)	53, 262, 280, 297, 367, 681
LmnI	GCTCC	4 cut(s)	63, 267, 439, 622
Lsp1109I	GCAGC	3 cut(s)	331, 454, 685
LweI	GCATC	6 cut(s)	387, 418, 489, 516, 910, 940
MaeI	CTAG	2 cut(s)	194, 626
MaeII	ACGT	2 cut(s)	333, 1086
MaeIII	GTNAC	2 cut(s)	653, 862
MalI	GATC	6 cut(s)	55, 264, 282, 299, 369, 683
MbiI	CCGCTC	1 cut(s)	1129
MboI	GATC	6 cut(s)	53, 262, 280, 297, 367, 681
MfeI	CAATTG	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	885
MluCI	AATT	3 cut(s)	293, 493, 649
MlyI	GAGTC	3 cut(s)	11, 470, 731
MmeI	TCCRAC	2 cut(s)	624, 1069
MroNI	GCCGGC	2 cut(s)	431, 448
MseI	TTAA	2 cut(s)	357, 837
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	7 cut(s)	61, 67, 361, 392, 432, 449, 531
MspR9I	CCNGG	2 cut(s)	61, 531
MunI	CAATTG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	96, 673
NaeI	GCCGGC	2 cut(s)	433, 450
NciI	CCSGG	2 cut(s)	61, 531
NdeII	GATC	6 cut(s)	53, 262, 280, 297, 367, 681
NgoMIV	GCCGGC	2 cut(s)	431, 448
NlaIII	CATG	1 cut(s)	613
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	862
NspV	TTCGAA	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 207, 461
PdiI	GCCGGC	2 cut(s)	433, 450
PfeI	GAWTC	4 cut(s)	115, 145, 349, 1055
PflFI	GACNNNGTC	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	360
PkrI	GCNGC	5 cut(s)	228, 321, 444, 447, 675
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	3 cut(s)	11, 469, 730
PpsI	GAGTC	3 cut(s)	11, 469, 730
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
PspFI	CCCAGC	2 cut(s)	229, 315
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	3 cut(s)	69, 214, 363
PspPPI	RGGWCCY	1 cut(s)	214
PsyI	GACNNNGTC	1 cut(s)	245
PvuI	CGATCG	1 cut(s)	265
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
Rsr2I	CGGWCCG	2 cut(s)	69, 363
RsrII	CGGWCCG	2 cut(s)	69, 363
SaqAI	TTAA	2 cut(s)	357, 837
SatI	GCNGC	5 cut(s)	227, 320, 443, 446, 674
Sau3AI	GATC	6 cut(s)	53, 262, 280, 297, 367, 681
Sau96I	GGNCC	3 cut(s)	69, 214, 363
SchI	GAGTC	3 cut(s)	11, 470, 731
ScrFI	CCNGG	2 cut(s)	61, 531
SduI	GDGCHC	1 cut(s)	885
SfaNI	GCATC	6 cut(s)	387, 418, 489, 516, 910, 940
SfuI	TTCGAA	1 cut(s)	491
SinI	GGWCC	3 cut(s)	69, 214, 363
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	3 cut(s)	293, 493, 649
SspMI	CTAG	2 cut(s)	194, 626
StyD4I	CCNGG	2 cut(s)	59, 529
TaiI	ACGT	2 cut(s)	336, 1089
TaqI	TCGA	5 cut(s)	201, 261, 464, 491, 725
TasI	AATT	3 cut(s)	293, 493, 649
TauI	GCSGC	2 cut(s)	229, 448
TfiI	GAWTC	4 cut(s)	115, 145, 349, 1055
Tru1I	TTAA	2 cut(s)	357, 837
Tru9I	TTAA	2 cut(s)	357, 837
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	3 cut(s)	319, 442, 673
Tsp45I	GTSAC	1 cut(s)	862
TspDTI	ATGAA	2 cut(s)	17, 1008
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	3 cut(s)	69, 214, 363
XspI	CTAG	2 cut(s)	194, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.