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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42370 AT3G58110 AT3G58110 |
| fragaria_vesca | FvH4_3g11260 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 FvH4_6g27000 |
| malus_domestica | MD09G1139300.v1.1 MD17G1128800.v1.1 |
| prunus_persica | Prupe.8G044600_v2.0.a1 Prupe.8G044600_v2.0.a1 |
| pyrus_communis | pycom09g05990 |
| rosa_chinensis | RchiOBHm_Chr2g0128861 RchiOBHm_Chr5g0053351 |
| rosa_laevigata | RLG00000019034 RLG00000034768 |
| rosa_multiflora | Rmu_co8379445.1_g000001 Rmu_co8380183.1_g000001 Rmu_sc0001643.1_g000032 Rmu_sc0001966.1_g000005 Rmu_sc0038988.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00029080 Rroxscaffold_2G00115160 |
| rosa_rugosa | Rorug02G0281900 Rorug02G0282000 Rorug05G0267400 |
| rosa_samantha | Rh2AG334400 Rh2BG342400 Rh2CG321300 Rh2DG359100 Rh5AG339900 Rh5BG350300 Rh5CG376800 Rh5DG364400 |
| rosa_wichuraiana | Rw2G027050 Rw5G032100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 248 |
| AatII | GACGTC | 1 cut(s) | 246 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1376 |
| AccIII | TCCGGA | 1 cut(s) | 174 |
| AciI | CCGC | 7 cut(s) | 81, 470, 605, 1159, 1162, 1703, 1770 |
| AclWI | GGATC | 1 cut(s) | 158 |
| AcoI | YGGCCR | 2 cut(s) | 13, 1401 |
| AcsI | RAATTY | 3 cut(s) | 911, 1138, 2072 |
| AcuI | CTGAAG | 2 cut(s) | 1107, 1311 |
| AcyI | GRCGYC | 1 cut(s) | 243 |
| AfaI | GTAC | 1 cut(s) | 1599 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 112, 174, 1301, 1376 |
| AflII | CTTAAG | 1 cut(s) | 506 |
| AflIII | ACRYGT | 1 cut(s) | 1581 |
| AgsI | TTSAA | 8 cut(s) | 286, 959, 1300, 1843, 2033, 2054, 2078, 2099 |
| AjnI | CCWGG | 3 cut(s) | 1441, 1488, 1763 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 435, 467 |
| AleI | CACNNNNGTG | 1 cut(s) | 2091 |
| Alw21I | GWGCWC | 2 cut(s) | 1752, 1900 |
| Alw26I | GTCTC | 3 cut(s) | 570, 1520, 1780 |
| AlwI | GGATC | 1 cut(s) | 158 |
| Ama87I | CYCGRG | 1 cut(s) | 410 |
| Aor13HI | TCCGGA | 1 cut(s) | 174 |
| AoxI | GGCC | 6 cut(s) | 13, 133, 219, 1401, 1761, 1857 |
| ApeKI | GCWGC | 4 cut(s) | 35, 100, 1705, 1777 |
| ApoI | RAATTY | 3 cut(s) | 911, 1138, 2072 |
| AspA2I | CCTAGG | 1 cut(s) | 130 |
| AspLEI | GCGC | 1 cut(s) | 129 |
| AspS9I | GGNCC | 5 cut(s) | 115, 220, 940, 1449, 1767 |
| AsuC2I | CCSGG | 2 cut(s) | 223, 1569 |
| AsuHPI | GGTGA | 4 cut(s) | 307, 427, 524, 1583 |
| AvaI | CYCGRG | 1 cut(s) | 410 |
| AvaII | GGWCC | 4 cut(s) | 115, 940, 1449, 1767 |
| AvrII | CCTAGG | 1 cut(s) | 130 |
| AxyI | CCTNAGG | 1 cut(s) | 216 |
| BalI | TGGCCA | 2 cut(s) | 15, 1403 |
| BbsI | GAAGAC | 2 cut(s) | 1317, 1339 |
| Bbv12I | GWGCWC | 2 cut(s) | 1752, 1900 |
| BbvCI | CCTCAGC | 2 cut(s) | 609, 1535 |
| BbvI | GCAGC | 4 cut(s) | 22, 112, 1717, 1789 |
| BccI | CCATC | 6 cut(s) | 5, 24, 114, 412, 1603, 1633 |
| BceAI | ACGGC | 1 cut(s) | 246 |
| BciT130I | CCWGG | 3 cut(s) | 1443, 1490, 1765 |
| BciVI | GTATCC | 1 cut(s) | 1075 |
| BclI | TGATCA | 2 cut(s) | 558, 1393 |
| BcnI | CCSGG | 2 cut(s) | 223, 1569 |
| BcoDI | GTCTC | 3 cut(s) | 570, 1520, 1780 |
| BfaI | CTAG | 6 cut(s) | 131, 321, 797, 863, 986, 1052 |
| BfmI | CTRYAG | 2 cut(s) | 208, 1849 |
| BfoI | RGCGCY | 1 cut(s) | 130 |
| BfrI | CTTAAG | 1 cut(s) | 506 |
| BfuI | GTATCC | 1 cut(s) | 1075 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1865 |
| BisI | GCNGC | 6 cut(s) | 36, 101, 606, 1160, 1706, 1778 |
| BlnI | CCTAGG | 1 cut(s) | 130 |
| BlsI | GCNGC | 6 cut(s) | 37, 102, 607, 1161, 1707, 1779 |
| Bme1390I | CCNGG | 5 cut(s) | 223, 1443, 1490, 1569, 1765 |
| Bme18I | GGWCC | 4 cut(s) | 115, 940, 1449, 1767 |
| BmeT110I | CYCGRG | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 5 cut(s) | 115, 220, 940, 1449, 1767 |
| BmiI | GGNNCC | 1 cut(s) | 1149 |
| BmrFI | CCNGG | 5 cut(s) | 223, 1443, 1490, 1569, 1765 |
| BmsI | GCATC | 5 cut(s) | 396, 1554, 1678, 1818, 2029 |
| BpiI | GAAGAC | 2 cut(s) | 1317, 1339 |
| BpmI | CTGGAG | 1 cut(s) | 1989 |
| Bpu10I | CCTNAGC | 2 cut(s) | 609, 1535 |
| BpuEI | CTTGAG | 1 cut(s) | 107 |
| BpuMI | CCSGG | 2 cut(s) | 223, 1569 |
| BsaBI | GATNNNNATC | 1 cut(s) | 15 |
| BsaHI | GRCGYC | 1 cut(s) | 243 |
| BsaI | GGTCTC | 1 cut(s) | 1520 |
| BsaJI | CCNNGG | 3 cut(s) | 130, 411, 1550 |
| BsaWI | WCCGGW | 2 cut(s) | 174, 292 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 112, 174, 1301, 1376 |
| Bse1I | ACTGG | 1 cut(s) | 1719 |
| Bse21I | CCTNAGG | 1 cut(s) | 216 |
| Bse8I | GATNNNNATC | 1 cut(s) | 15 |
| BseAI | TCCGGA | 1 cut(s) | 174 |
| BseBI | CCWGG | 3 cut(s) | 1443, 1490, 1765 |
| BseDI | CCNNGG | 3 cut(s) | 130, 411, 1550 |
| BseJI | GATNNNNATC | 1 cut(s) | 15 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 112, 174, 1301, 1376 |
| BseMII | CTCAG | 5 cut(s) | 230, 581, 600, 1526, 1785 |
| BseNI | ACTGG | 1 cut(s) | 1719 |
| BseRI | GAGGAG | 6 cut(s) | 110, 341, 677, 824, 857, 890 |
| BseXI | GCAGC | 4 cut(s) | 22, 112, 1717, 1789 |
| BseYI | CCCAGC | 2 cut(s) | 1127, 2057 |
| BsgI | GTGCAG | 1 cut(s) | 77 |
| BshFI | GGCC | 6 cut(s) | 15, 135, 221, 1403, 1763, 1859 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1752, 1900 |
| BsiHKCI | CYCGRG | 1 cut(s) | 410 |
| BsiSI | CCGG | 4 cut(s) | 175, 223, 293, 1568 |
| BslFI | GGGAC | 3 cut(s) | 62, 155, 1442 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 112, 174, 1301, 1376 |
| BsmAI | GTCTC | 3 cut(s) | 570, 1520, 1780 |
| BsmFI | GGGAC | 3 cut(s) | 62, 155, 1442 |
| BsnI | GGCC | 6 cut(s) | 15, 135, 221, 1403, 1763, 1859 |
| Bso31I | GGTCTC | 1 cut(s) | 1520 |
| BsoBI | CYCGRG | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1752, 1900 |
| Bsp13I | TCCGGA | 1 cut(s) | 174 |
| Bsp1407I | TGTACA | 1 cut(s) | 1597 |
| Bsp143I | GATC | 7 cut(s) | 163, 181, 558, 1057, 1174, 1270, 1393 |
| BspACI | CCGC | 7 cut(s) | 81, 470, 605, 1159, 1162, 1703, 1770 |
| BspANI | GGCC | 6 cut(s) | 15, 135, 221, 1403, 1763, 1859 |
| BspCNI | CTCAG | 5 cut(s) | 229, 580, 601, 1527, 1786 |
| BspEI | TCCGGA | 1 cut(s) | 174 |
| BspHI | TCATGA | 1 cut(s) | 2207 |
| BspLI | GGNNCC | 1 cut(s) | 1149 |
| BspPI | GGATC | 1 cut(s) | 158 |
| BspTI | CTTAAG | 1 cut(s) | 506 |
| BspTNI | GGTCTC | 1 cut(s) | 1520 |
| BsrGI | TGTACA | 1 cut(s) | 1597 |
| BsrI | ACTGG | 1 cut(s) | 1719 |
| BssECI | CCNNGG | 3 cut(s) | 130, 411, 1550 |
| BssMI | GATC | 7 cut(s) | 163, 181, 558, 1057, 1174, 1270, 1393 |
| BssNI | GRCGYC | 1 cut(s) | 243 |
| BssT1I | CCWWGG | 2 cut(s) | 130, 1550 |
| Bst2UI | CCWGG | 3 cut(s) | 1443, 1490, 1765 |
| Bst4CI | ACNGT | 3 cut(s) | 838, 971, 1635 |
| Bst6I | CTCTTC | 4 cut(s) | 615, 1251, 1778, 2001 |
| BstACI | GRCGYC | 1 cut(s) | 243 |
| BstAFI | CTTAAG | 1 cut(s) | 506 |
| BstAUI | TGTACA | 1 cut(s) | 1597 |
| BstC8I | GCNNGC | 3 cut(s) | 279, 1857, 2175 |
| BstDEI | CTNAG | 6 cut(s) | 216, 567, 609, 1535, 1692, 1794 |
| BstH2I | RGCGCY | 1 cut(s) | 130 |
| BstHHI | GCGC | 1 cut(s) | 129 |
| BstKTI | GATC | 7 cut(s) | 166, 184, 561, 1060, 1177, 1273, 1396 |
| BstMAI | GTCTC | 3 cut(s) | 570, 1520, 1780 |
| BstMBI | GATC | 7 cut(s) | 163, 181, 558, 1057, 1174, 1270, 1393 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 100, 1600, 1769, 1865, 2183 |
| BstNI | CCWGG | 3 cut(s) | 1443, 1490, 1765 |
| BstNSI | RCATGY | 4 cut(s) | 100, 1346, 1585, 1598 |
| BstSCI | CCNGG | 5 cut(s) | 221, 1441, 1488, 1567, 1763 |
| BstSFI | CTRYAG | 2 cut(s) | 208, 1849 |
| BstV1I | GCAGC | 4 cut(s) | 22, 112, 1717, 1789 |
| BstV2I | GAAGAC | 2 cut(s) | 1317, 1339 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1022 |
| Bsu36I | CCTNAGG | 1 cut(s) | 216 |
| BsuI | GTATCC | 1 cut(s) | 1075 |
| BsuRI | GGCC | 6 cut(s) | 15, 135, 221, 1403, 1763, 1859 |
| BtgZI | GCGATG | 1 cut(s) | 172 |
| BtsI | GCAGTG | 2 cut(s) | 1385, 1610 |
| BtsIMutI | CAGTG | 6 cut(s) | 259, 575, 976, 1385, 1610, 1640 |
| Cac8I | GCNNGC | 3 cut(s) | 279, 1857, 2175 |
| CciI | TCATGA | 1 cut(s) | 2207 |
| CfoI | GCGC | 1 cut(s) | 129 |
| Cfr13I | GGNCC | 5 cut(s) | 115, 220, 940, 1449, 1767 |
| CseI | GACGC | 1 cut(s) | 528 |
| Csp6I | GTAC | 1 cut(s) | 1598 |
| CviQI | GTAC | 1 cut(s) | 1598 |
| DdeI | CTNAG | 6 cut(s) | 216, 567, 609, 1535, 1692, 1794 |
| DpnI | GATC | 7 cut(s) | 165, 183, 560, 1059, 1176, 1272, 1395 |
| DpnII | GATC | 7 cut(s) | 163, 181, 558, 1057, 1174, 1270, 1393 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 248 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 248 |
| EaeI | YGGCCR | 2 cut(s) | 13, 1401 |
| Eam1104I | CTCTTC | 4 cut(s) | 615, 1251, 1778, 2001 |
| EarI | CTCTTC | 4 cut(s) | 615, 1251, 1778, 2001 |
| Eco130I | CCWWGG | 2 cut(s) | 130, 1550 |
| Eco147I | AGGCCT | 1 cut(s) | 135 |
| Eco31I | GGTCTC | 1 cut(s) | 1520 |
| Eco32I | GATATC | 1 cut(s) | 436 |
| Eco47I | GGWCC | 4 cut(s) | 115, 940, 1449, 1767 |
| Eco57I | CTGAAG | 2 cut(s) | 1107, 1311 |
| Eco81I | CCTNAGG | 1 cut(s) | 216 |
| Eco88I | CYCGRG | 1 cut(s) | 410 |
| EcoO109I | RGGNCCY | 3 cut(s) | 115, 940, 1449 |
| EcoRII | CCWGG | 3 cut(s) | 1441, 1488, 1763 |
| EcoRV | GATATC | 1 cut(s) | 436 |
| EcoT14I | CCWWGG | 2 cut(s) | 130, 1550 |
| EcoT22I | ATGCAT | 1 cut(s) | 1344 |
| ErhI | CCWWGG | 2 cut(s) | 130, 1550 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1973, 2005 |
| FaqI | GGGAC | 3 cut(s) | 62, 155, 1442 |
| FauI | CCCGC | 3 cut(s) | 88, 463, 1710 |
| FbaI | TGATCA | 2 cut(s) | 558, 1393 |
| Fnu4HI | GCNGC | 6 cut(s) | 36, 101, 606, 1160, 1706, 1778 |
| Fsp4HI | GCNGC | 6 cut(s) | 36, 101, 606, 1160, 1706, 1778 |
| FspBI | CTAG | 6 cut(s) | 131, 321, 797, 863, 986, 1052 |
| GlaI | GCGC | 1 cut(s) | 128 |
| GluI | GCNGC | 6 cut(s) | 36, 101, 606, 1160, 1706, 1778 |
| GsaI | CCCAGC | 2 cut(s) | 1131, 2061 |
| GsuI | CTGGAG | 1 cut(s) | 1989 |
| HaeII | RGCGCY | 1 cut(s) | 130 |
| HaeIII | GGCC | 6 cut(s) | 15, 135, 221, 1403, 1763, 1859 |
| HapII | CCGG | 4 cut(s) | 175, 223, 293, 1568 |
| HgaI | GACGC | 1 cut(s) | 528 |
| HhaI | GCGC | 1 cut(s) | 129 |
| Hin1I | GRCGYC | 1 cut(s) | 243 |
| Hin6I | GCGC | 1 cut(s) | 127 |
| HinP1I | GCGC | 1 cut(s) | 127 |
| HincII | GTYRAC | 1 cut(s) | 1012 |
| HindII | GTYRAC | 1 cut(s) | 1012 |
| HindIII | AAGCTT | 2 cut(s) | 287, 1982 |
| HinfI | GANTC | 3 cut(s) | 329, 338, 2204 |
| HpaII | CCGG | 4 cut(s) | 175, 223, 293, 1568 |
| HphI | GGTGA | 4 cut(s) | 307, 427, 524, 1583 |
| Hpy166II | GTNNAC | 2 cut(s) | 967, 1012 |
| Hpy188I | TCNGA | 1 cut(s) | 1653 |
| Hpy188III | TCNNGA | 8 cut(s) | 110, 175, 686, 1172, 1274, 1329, 1840, 2208 |
| Hpy8I | GTNNAC | 2 cut(s) | 967, 1012 |
| Hpy99I | CGWCG | 2 cut(s) | 203, 544 |
| HpyCH4III | ACNGT | 3 cut(s) | 838, 971, 1635 |
| HpyCH4IV | ACGT | 1 cut(s) | 243 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 100, 1600, 1769, 1865, 2183 |
| HpyF3I | CTNAG | 6 cut(s) | 216, 567, 609, 1535, 1692, 1794 |
| HpySE526I | ACGT | 1 cut(s) | 243 |
| Hsp92I | GRCGYC | 1 cut(s) | 243 |
| HspAI | GCGC | 1 cut(s) | 127 |
| Kpn2I | TCCGGA | 1 cut(s) | 174 |
| Ksp22I | TGATCA | 2 cut(s) | 558, 1393 |
| Kzo9I | GATC | 7 cut(s) | 163, 181, 558, 1057, 1174, 1270, 1393 |
| LmnI | GCTCC | 2 cut(s) | 664, 1591 |
| Lsp1109I | GCAGC | 4 cut(s) | 22, 112, 1717, 1789 |
| LweI | GCATC | 5 cut(s) | 396, 1554, 1678, 1818, 2029 |
| MaeI | CTAG | 6 cut(s) | 131, 321, 797, 863, 986, 1052 |
| MaeII | ACGT | 1 cut(s) | 243 |
| MaeIII | GTNAC | 5 cut(s) | 530, 1033, 1345, 1469, 1571 |
| MalI | GATC | 7 cut(s) | 165, 183, 560, 1059, 1176, 1272, 1395 |
| MboI | GATC | 7 cut(s) | 163, 181, 558, 1057, 1174, 1270, 1393 |
| MfeI | CAATTG | 2 cut(s) | 518, 2028 |
| MhlI | GDGCHC | 2 cut(s) | 1752, 1900 |
| MlsI | TGGCCA | 2 cut(s) | 15, 1403 |
| MluNI | TGGCCA | 2 cut(s) | 15, 1403 |
| MlyI | GAGTC | 2 cut(s) | 338, 347 |
| MmeI | TCCRAC | 1 cut(s) | 2100 |
| Mox20I | TGGCCA | 2 cut(s) | 15, 1403 |
| Mph1103I | ATGCAT | 1 cut(s) | 1344 |
| MroI | TCCGGA | 1 cut(s) | 174 |
| MscI | TGGCCA | 2 cut(s) | 15, 1403 |
| MseI | TTAA | 8 cut(s) | 507, 915, 1433, 1742, 1961, 1991, 2043, 2148 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1586, 2091 |
| Msp20I | TGGCCA | 2 cut(s) | 15, 1403 |
| MspA1I | CMGCKG | 1 cut(s) | 1127 |
| MspCI | CTTAAG | 1 cut(s) | 506 |
| MspI | CCGG | 4 cut(s) | 175, 223, 293, 1568 |
| MspR9I | CCNGG | 5 cut(s) | 223, 1443, 1490, 1569, 1765 |
| MunI | CAATTG | 2 cut(s) | 518, 2028 |
| MvaI | CCWGG | 3 cut(s) | 1443, 1490, 1765 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 100, 1600, 1769, 1865, 2183 |
| NciI | CCSGG | 2 cut(s) | 223, 1569 |
| NdeII | GATC | 7 cut(s) | 163, 181, 558, 1057, 1174, 1270, 1393 |
| NlaIV | GGNNCC | 1 cut(s) | 1149 |
| NmuCI | GTSAC | 2 cut(s) | 1469, 1571 |
| NsiI | ATGCAT | 1 cut(s) | 1344 |
| NspI | RCATGY | 4 cut(s) | 100, 1346, 1585, 1598 |
| OliI | CACNNNNGTG | 1 cut(s) | 2091 |
| PagI | TCATGA | 1 cut(s) | 2207 |
| PceI | AGGCCT | 1 cut(s) | 135 |
| PciI | ACATGT | 1 cut(s) | 1581 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 195, 240, 338 |
| PfeI | GAWTC | 1 cut(s) | 2204 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1376 |
| PfoI | TCCNGGA | 1 cut(s) | 1441 |
| PkrI | GCNGC | 6 cut(s) | 37, 102, 607, 1161, 1707, 1779 |
| PleI | GAGTC | 2 cut(s) | 337, 346 |
| PpsI | GAGTC | 2 cut(s) | 337, 346 |
| PpuMI | RGGWCCY | 3 cut(s) | 115, 940, 1449 |
| PscI | ACATGT | 1 cut(s) | 1581 |
| Psp5II | RGGWCCY | 3 cut(s) | 115, 940, 1449 |
| Psp6I | CCWGG | 3 cut(s) | 1441, 1488, 1763 |
| PspFI | CCCAGC | 2 cut(s) | 1127, 2057 |
| PspGI | CCWGG | 3 cut(s) | 1441, 1488, 1763 |
| PspN4I | GGNNCC | 1 cut(s) | 1149 |
| PspPI | GGNCC | 5 cut(s) | 115, 220, 940, 1449, 1767 |
| PspPPI | RGGWCCY | 3 cut(s) | 115, 940, 1449 |
| PvuII | CAGCTG | 1 cut(s) | 1127 |
| RsaI | GTAC | 1 cut(s) | 1599 |
| RsaNI | GTAC | 1 cut(s) | 1598 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1586, 2091 |
| SaqAI | TTAA | 8 cut(s) | 507, 915, 1433, 1742, 1961, 1991, 2043, 2148 |
| SatI | GCNGC | 6 cut(s) | 36, 101, 606, 1160, 1706, 1778 |
| Sau3AI | GATC | 7 cut(s) | 163, 181, 558, 1057, 1174, 1270, 1393 |
| Sau96I | GGNCC | 5 cut(s) | 115, 220, 940, 1449, 1767 |
| SchI | GAGTC | 2 cut(s) | 338, 347 |
| ScrFI | CCNGG | 5 cut(s) | 223, 1443, 1490, 1569, 1765 |
| SduI | GDGCHC | 2 cut(s) | 1752, 1900 |
| SfaNI | GCATC | 5 cut(s) | 396, 1554, 1678, 1818, 2029 |
| SfcI | CTRYAG | 2 cut(s) | 208, 1849 |
| SinI | GGWCC | 4 cut(s) | 115, 940, 1449, 1767 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1586, 2091 |
| SmlI | CTYRAG | 2 cut(s) | 122, 506 |
| SmoI | CTYRAG | 2 cut(s) | 122, 506 |
| SseBI | AGGCCT | 1 cut(s) | 135 |
| SsiI | CCGC | 7 cut(s) | 81, 470, 605, 1159, 1162, 1703, 1770 |
| SspI | AATATT | 1 cut(s) | 919 |
| SspMI | CTAG | 6 cut(s) | 131, 321, 797, 863, 986, 1052 |
| StuI | AGGCCT | 1 cut(s) | 135 |
| StyD4I | CCNGG | 5 cut(s) | 221, 1441, 1488, 1567, 1763 |
| StyI | CCWWGG | 2 cut(s) | 130, 1550 |
| TaaI | ACNGT | 3 cut(s) | 838, 971, 1635 |
| TaiI | ACGT | 1 cut(s) | 246 |
| TaqI | TCGA | 5 cut(s) | 162, 332, 341, 1273, 1926 |
| TatI | WGTACW | 1 cut(s) | 1597 |
| TauI | GCSGC | 2 cut(s) | 608, 1162 |
| TfiI | GAWTC | 1 cut(s) | 2204 |
| Tru1I | TTAA | 8 cut(s) | 507, 915, 1433, 1742, 1961, 1991, 2043, 2148 |
| Tru9I | TTAA | 8 cut(s) | 507, 915, 1433, 1742, 1961, 1991, 2043, 2148 |
| TscAI | CASTG | 6 cut(s) | 259, 575, 976, 1392, 1610, 1640 |
| TseFI | GTSAC | 2 cut(s) | 1469, 1571 |
| TseI | GCWGC | 4 cut(s) | 35, 100, 1705, 1777 |
| Tsp45I | GTSAC | 2 cut(s) | 1469, 1571 |
| TspGWI | ACGGA | 2 cut(s) | 1284, 1364 |
| TspRI | CASTG | 6 cut(s) | 259, 575, 976, 1392, 1610, 1640 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1376 |
| Vha464I | CTTAAG | 1 cut(s) | 506 |
| VpaK11BI | GGWCC | 4 cut(s) | 115, 940, 1449, 1767 |
| XapI | RAATTY | 3 cut(s) | 911, 1138, 2072 |
| XceI | RCATGY | 4 cut(s) | 100, 1346, 1585, 1598 |
| XmaJI | CCTAGG | 1 cut(s) | 130 |
| XspI | CTAG | 6 cut(s) | 131, 321, 797, 863, 986, 1052 |
| ZraI | GACGTC | 1 cut(s) | 244 |
| Zsp2I | ATGCAT | 1 cut(s) | 1344 |