Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006825

Physical Location & Seq

Genomic Coordinates Forward (+)

17955953 .. 17958226

Gene Structure 2274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43190.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGTACAGAGACGGTTGTGCATGATCAGGCAAGATGGGCAATGGCTGCAATGGAACGAAGGCTTGCTGTTGCAAAAGCTCAGCTTCTTCAACAACAACAACAGAAGAATGAGAAAGATAAGAAGGGGACTTCTGATGTAGATGTCTCTATGAAAGAATCTCATCAAGCTGATTCACTGCCTACTCCCTCAAAGACATCAATTAAAAAAGTAGATCCCAAGGATGATGATTCTGTTGCATATACAAAGTTGTCCCATCCCGTTGATGAGAATCTGCTGGCAACCAATGTTAAGTTTTCTAGTGCAAAGGGAACTATAGTAGACAAGGTTTTGCATAACCTTCTTCGAAGCGGTGACTCTGCTCAAAAGTACTTGCAAGGTACTAAAAGTGTGAAGCTGGATAACTATATCCTTCTTGATAATTTTGTACAGTCACGGTCTTCGGCCTCTGGTTCTAAAAAGGCATCACAGAAGGATTCAAAACGTTCTAAAAGCCGTATGTCTATGAAGCGACTCAAGAAATCTGGTGCTTTGCATATCCCTAAAGATCTCCAAAAGTTTGATTTGTTTAAGCCAATGCATGGTATGTGGGAAAGTTACATGATGAAACTCATCAAGGTGACCGGGAAGATTCAATTATCTTTAACTCTTCTCTCAGCAGATCTTCATGGTGCTTTCATGTTTGTTGCTGAGTGCAAGATAGCATCATTCACTGGTGTACAAGGCATAATGGTGCGCGAGACATCCGAAACATTTGGAATAATCACACGAGATGACAAATTTCGAGTTGTACCGAAGAAGCTCTCTGTCTTCATCATCCAACTCGACTGCTGGAAGATTACTTTACATGGGGACAAGTTTATTTCAAGAGACAATATTGTTCAACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030677 GO:0030681 GO:0032991 GO:0033204 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

UPF0086

Protein Analysis

296

Amino Acids

33.27

Weight (kDa)

9.77

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P-MRP_p29	PF01868	216 - 290	1.2e-18	Ribonuclease P/MRP, subunit p29

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43190 AT2G43190 AT2G43190 AT2G43190 AT2G43190
fragaria_vesca	FvH4_6g15400 FvH4_6g15400 FvH4_6g15400 FvH4_6g15400
malus_domestica	MD04G1104000.v1.1 MD12G1123900.v1.1
prunus_persica	Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1 Prupe.4G230000_v2.0.a1
pyrus_communis	pycom12g12250
rosa_chinensis	RchiOBHm_Chr3g0468881
rosa_laevigata	RLG00000024404
rosa_roxburghii	Rroxscaffold_2G00108660 Rroxscaffold_6G00412490
rosa_rugosa	Rorug03G0097000 Rorug03G0097100
rosa_samantha	Rh2CG365200 Rh3AG146800 Rh3BG169300 Rh3DG205700
rosa_wichuraiana	Rw3G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	1 cut(s)	738
AciI	CCGC	1 cut(s)	351
AclI	AACGTT	2 cut(s)	484, 886
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	779
AfaI	GTAC	6 cut(s)	7, 371, 382, 429, 720, 792
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	5 cut(s)	92, 480, 635, 867, 884
AluBI	AGCT	5 cut(s)	80, 85, 170, 397, 802
AluI	AGCT	5 cut(s)	80, 85, 170, 397, 802
Alw26I	GTCTC	4 cut(s)	5, 151, 734, 864
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	444
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	779
AspLEI	GCGC	1 cut(s)	738
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	2 cut(s)	365, 631
AsuII	TTCGAA	1 cut(s)	346
BauI	CACGAG	1 cut(s)	768
BbsI	GAAGAC	2 cut(s)	432, 802
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	30, 264
BceAI	ACGGC	1 cut(s)	480
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	4 cut(s)	5, 151, 734, 864
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	315
BglII	AGATCT	2 cut(s)	547, 661
BisI	GCNGC	1 cut(s)	48
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	49
BmcAI	AGTACT	1 cut(s)	371
Bme1390I	CCNGG	1 cut(s)	625
BmrFI	CCNGG	1 cut(s)	625
BmsI	GCATC	2 cut(s)	473, 713
BpiI	GAAGAC	2 cut(s)	432, 802
Bpu1102I	GCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	625
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	718
Bse3DI	GCAATG	2 cut(s)	48, 57
Bse8I	GATNNNNATC	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	4 cut(s)	229, 256, 743, 816
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	2 cut(s)	48, 57
BseMII	CTCAG	3 cut(s)	95, 669, 681
BseNI	ACTGG	1 cut(s)	718
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	738
BshFI	GGCC	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	624
BslFI	GGGAC	3 cut(s)	142, 238, 866
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	4 cut(s)	5, 151, 734, 864
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	3 cut(s)	142, 238, 866
BsnI	GGCC	1 cut(s)	446
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1407I	TGTACA	2 cut(s)	427, 718
Bsp143I	GATC	4 cut(s)	25, 214, 547, 661
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	1 cut(s)	446
BspCNI	CTCAG	3 cut(s)	94, 668, 682
BspFNI	CGCG	1 cut(s)	738
BspPI	GGATC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	48, 57
BsrGI	TGTACA	2 cut(s)	427, 718
BsrI	ACTGG	1 cut(s)	718
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	4 cut(s)	25, 214, 547, 661
BssSI	CACGAG	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	768
Bst4CI	ACNGT	3 cut(s)	16, 432, 438
Bst6I	CTCTTC	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstAUI	TGTACA	2 cut(s)	427, 718
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	66, 279
BstDEI	CTNAG	3 cut(s)	81, 655, 690
BstEII	GGTNACC	1 cut(s)	619
BstF5I	GGATG	4 cut(s)	229, 256, 743, 816
BstFNI	CGCG	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	738
BstKTI	GATC	4 cut(s)	28, 217, 550, 664
BstMAI	GTCTC	4 cut(s)	5, 151, 734, 864
BstMBI	GATC	4 cut(s)	25, 214, 547, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstPI	GGTNACC	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	623
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	738
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	2 cut(s)	432, 802
BstX2I	RGATCY	3 cut(s)	214, 547, 661
BstYI	RGATCY	3 cut(s)	214, 547, 661
BsuRI	GGCC	1 cut(s)	446
BtsCI	GGATG	4 cut(s)	229, 256, 743, 816
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	176, 711
Cac8I	GCNNGC	2 cut(s)	66, 279
CfoI	GCGC	1 cut(s)	738
Csp6I	GTAC	6 cut(s)	6, 370, 381, 428, 719, 791
CviAII	CATG	6 cut(s)	23, 581, 601, 668, 679, 848
CviQI	GTAC	6 cut(s)	6, 370, 381, 428, 719, 791
DdeI	CTNAG	3 cut(s)	81, 655, 690
DpnI	GATC	4 cut(s)	27, 216, 549, 663
DpnII	GATC	4 cut(s)	25, 214, 547, 661
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Eco130I	CCWWGG	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	619
EcoO65I	GGTNACC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	6 cut(s)	26, 584, 604, 671, 682, 851
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	3 cut(s)	142, 238, 866
FatI	CATG	6 cut(s)	22, 580, 600, 667, 678, 847
FbaI	TGATCA	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	4 cut(s)	236, 243, 730, 803
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	737
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	446
HapII	CCGG	1 cut(s)	624
HhaI	GCGC	1 cut(s)	738
Hin1II	CATG	6 cut(s)	26, 584, 604, 671, 682, 851
Hin6I	GCGC	1 cut(s)	736
HinP1I	GCGC	1 cut(s)	736
HinfI	GANTC	8 cut(s)	158, 173, 230, 271, 356, 476, 513, 631
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	2 cut(s)	365, 631
Hpy166II	GTNNAC	2 cut(s)	322, 719
Hpy188I	TCNGA	2 cut(s)	136, 748
Hpy188III	TCNNGA	3 cut(s)	416, 517, 867
Hpy8I	GTNNAC	2 cut(s)	322, 719
HpyAV	CCTTC	5 cut(s)	54, 118, 350, 422, 466
HpyCH4III	ACNGT	3 cut(s)	16, 432, 438
HpyCH4IV	ACGT	2 cut(s)	484, 886
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	3 cut(s)	81, 655, 690
HpySE526I	ACGT	2 cut(s)	484, 886
Hsp92II	CATG	6 cut(s)	26, 584, 604, 671, 682, 851
HspAI	GCGC	1 cut(s)	736
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	25, 214, 547, 661
LpnPI	CCDG	8 cut(s)	14, 263, 383, 435, 510, 637, 699, 817
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	473, 713
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	2 cut(s)	484, 886
MaeIII	GTNAC	4 cut(s)	353, 432, 596, 619
MalI	GATC	4 cut(s)	27, 216, 549, 663
MboI	GATC	4 cut(s)	25, 214, 547, 661
MflI	RGATCY	3 cut(s)	214, 547, 661
MluCI	AATT	4 cut(s)	201, 421, 635, 779
MlyI	GAGTC	2 cut(s)	350, 507
MmeI	TCCRAC	1 cut(s)	844
MnlI	CCTC	2 cut(s)	199, 457
Mph1103I	ATGCAT	1 cut(s)	582
MseI	TTAA	5 cut(s)	204, 291, 570, 644, 889
MslI	CAYNNNNRTG	2 cut(s)	617, 731
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	1 cut(s)	625
MvnI	CGCG	1 cut(s)	738
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NciI	CCSGG	1 cut(s)	625
NdeII	GATC	4 cut(s)	25, 214, 547, 661
NlaIII	CATG	6 cut(s)	26, 584, 604, 671, 682, 851
NmuCI	GTSAC	3 cut(s)	353, 432, 619
NsiI	ATGCAT	1 cut(s)	582
NspV	TTCGAA	1 cut(s)	346
PfeI	GAWTC	6 cut(s)	158, 173, 230, 271, 476, 631
PflMI	CCANNNNNTGG	1 cut(s)	581
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	350, 507
PpsI	GAGTC	2 cut(s)	350, 507
Psp1406I	AACGTT	2 cut(s)	484, 886
PspEI	GGTNACC	1 cut(s)	619
PsuI	RGATCY	3 cut(s)	214, 547, 661
RsaI	GTAC	6 cut(s)	7, 371, 382, 429, 720, 792
RsaNI	GTAC	6 cut(s)	6, 370, 381, 428, 719, 791
RseI	CAYNNNNRTG	2 cut(s)	617, 731
SaqAI	TTAA	5 cut(s)	204, 291, 570, 644, 889
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	4 cut(s)	25, 214, 547, 661
ScaI	AGTACT	1 cut(s)	371
SchI	GAGTC	2 cut(s)	350, 507
ScrFI	CCNGG	1 cut(s)	625
SfaNI	GCATC	2 cut(s)	473, 713
SfcI	CTRYAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	617, 731
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	4 cut(s)	201, 421, 635, 779
SsiI	CCGC	1 cut(s)	351
SspI	AATATT	1 cut(s)	877
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	623
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	16, 432, 438
TaiI	ACGT	2 cut(s)	487, 889
TaqI	TCGA	3 cut(s)	346, 784, 825
TasI	AATT	4 cut(s)	201, 421, 635, 779
TatI	WGTACW	3 cut(s)	369, 427, 718
TfiI	GAWTC	6 cut(s)	158, 173, 230, 271, 476, 631
Tru1I	TTAA	5 cut(s)	204, 291, 570, 644, 889
Tru9I	TTAA	5 cut(s)	204, 291, 570, 644, 889
TscAI	CASTG	2 cut(s)	183, 718
TseFI	GTSAC	3 cut(s)	353, 432, 619
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	3 cut(s)	353, 432, 619
TspDTI	ATGAA	6 cut(s)	167, 521, 620, 656, 667, 802
TspRI	CASTG	2 cut(s)	183, 718
Van91I	CCANNNNNTGG	1 cut(s)	581
XapI	RAATTY	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	371
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.